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    Cell structure andfunctionDoreen Alexis F VillanuevaIntroduction to Physiology

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    Outline

    • Introduction

    • Membranes• Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    Outline

    • Introduction• Membranes

    • Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    CellsSmallest living unit

    Most are microsco$ic

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    Characteristics of All Cells

    • A surrounding membrane

    • Proto$lasm ( cell contents in thic' )uid

    • Organelles ( structures for cell function

    • Control center *ith D!A

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    +o* big is the cell,

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    Cell -y$es

    • Pro'aryotic

    • #u'aryotic

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    Pro'aryotic Cells

    • First cell ty$e on earth

    • Cell ty$e of .acteria and Archaea

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    Pro'aryotic Cells

    • !o membrane bound nucleus

    • !ucleoid / region of D!A concentration

    • Organelles not bound by membranes

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    "e$resentative AnimalCell

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     -he interior of a cell is divided into t*o regions1234 the nucleus, a s$herical or oval structureusually near the center of the cell0 and 254 the

    cytoplasm, the region outside the nucleus

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     -he interior of a cell is divided into t*o regions1234 the nucleus, a s$herical or oval structureusually near the center of the cell0 and 254 the

    cytoplasm, the region outside the nucleus

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     -he cyto$lasm contains t*o com$onents1 234 cellorganelles and 254 the )uid surrounding theorganelles 'no*n as the cy- tosol 2cyto$lasmic

    solution46

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     -he term intracellular fuid refers to all the )uid insidea cell7in other *ords0 cytosol $lus the )uid inside all theorganelles0 including the nucleus6 -he chemicalcom$ositions of the )uids in these cell organelles di8er

    from that of the cytosol6 -he cytosol is by far the largestintracellular )uid com artment6

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    Outline

    • Introduction

    • Membranes• Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    Membranes

    Membranes form a ma9or structural element incells6 Although membranes $erform a variety offunctions0 their most universal role is to act as aselective barrier to the $assage of molecules0

    allo*ing some molecules to cross *hile excludingothers6

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     -he Plasma Membrane

    •  -he $lasma membrane regulates the $assage ofsubstances into and out of the cell0 *hereas themembranes surrounding cell organelles allo*selective movement of substances bet*een the

    organelles and the cytosol6• One of the ad: vantages of restricting the

    movements of molecules across membranes iscon;ning the $roducts of chem: ical reactions tos$eci;c cell organelles6

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     -he $lasma membrane0 in addition to acting as aselective barrier0 $lays an im$ortant role indetecting chemical signals from other cells and in

    anchoring cells to ad9acent cells and to theextracellular matrix of connective:tissue $roteins

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    Outline

    • Introduction

    • Membranes• Membrane Structure• Membrane unctions

    • Cell Organelles• !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes

    • Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    Membrane Structure• All membranes consist of a double layer of li$id

    molecules in *hich $roteins are embedded

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     -he ma9or membrane li$ids are phospholipids.these are am$hi$athic molecules1 one end has acharged region0 and the remainder of the molecule0

    *hich consists of t*o long fatty acid chains0 isnon$olar6

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    Lipid Bilayer 

    Phospholipid

    Phosphatidylcholine

    Phosphatidylserine

    Phosphatidylethanolamine

    Phosphatidylinositol

    Cholesterol 

    Sphingolipid

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    Cholesterol

    •  -he $lasma membrane also contains cholesterol2about one molecule of cholesterol for eachmolecule of $hos$holi$id40 *hereas intracellularmembranes contain very little cholesterol6

    Cholesterol0 a steroid0 is slightly am$hi$athicbecause of a single $olar hydroxyl grou$ on itsnon$olar ring structure6

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    Membrane proteinsIntegral (intrinsic) proteins

    Peripheral (extrinsic) proteins

    Integral

    protein Peripheral

    protein

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    •  -here are t*o classes of membrane $roteins1integral and $eri$heral6 Integral membraneproteins are closely associated *ith themembrane li$ids and can: not be extracted from

    the membrane *ithout disru$ting the li$id bilayer6• &i'e the $hos$holi$ids0 the integral $roteins are

    am$hi$athic0 having $olar amino acid side chainsin one region of the molecule and non$o: lar sidechains clustered together in a se$arate region6

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    .ecause they are am$hi$athic0 integral $roteins

    are arranged in the membrane *ith the sameorientation as am$hi$athic li$ids7the $olarregions are at the surfaces in association *ith$olar *ater molecules0 andthe non$olar regions are in the interior in

    association *ith non$olar fatty acid chains

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     -ransmembrane $roteins

    • Most integral$roteins s$anthe entiremembrane and

    are referred toastransmembrane proteins.

    •  -hese

    transmembrane$roteins crossthe li$id bilayerseveral times

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    •  -hese $roteins have $olar regions connected bynon$olar segments that associate *ith thenon$olar regions of the li$ids in the membraneinterior6

    •  -he $olar regions of transmembrane $roteinsmay extend far beyond the surfaces of the li$idbilayer6 Some transmembrane $roteins formchannels through *hich ions or *ater can crossthe membrane0 *hereas others are associated

    *ith the transmission of chemical signals acrossthe membrane or the anchoring of extracellularand intracellular $rotein ;laments to the $lasmamembrane6

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    Peri$heral MembraneProteinsPeripheral membrane proteins are notam$hi$athic and do not associate *ith the non$olarregions of the li$ids in the interior of themembrane6 -hey are located at the membrane

    surface *here they are bound to the $olar regionsof the integral membrane $roteins

    • Most of the $eri$heral $roteins are on thecytosolic surface of the $lasma membrane *herethey are associated *ith cytos'eletal elements

    that in)uence cell sha$e and motility6

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    Structure of cell membrane

    !luid Mosaic Model (Singer " #icholson$ %&')

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    Outline

    • Introduction

    • Membranes• Membrane Structure

    • Membrane unctions• Cell Organelles

    • !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes

    • Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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            )        *

    + Ma,or !unctions -f Membrane

    Proteins1. Transport. (left . protein that spans the membrane

    may pro/ide a hydrophilic channel across the

    membrane that is selecti/e for a particular solute0

    (right -ther transport proteins shuttle a substance

    from one side to the other by changing shape0 Some of

    these proteins hydroly1e .2P as an energy ssource to

    acti/ely pump substances across the membrane

    !. "n#ymatic acti$ity. . protein built into the membrane

    may be an en1yme 3ith its acti/e site exposed to

    substances in the ad,acent solution0 In some cases$

    se/eral en1ymes in a membrane are organi1ed as a

    team that carries out se4uential steps of a metabolic

    path3ay0

    0 %ignal transduction. . membrane protein may ha/e a

    binding site 3ith a specific shape that fits the shape of a

    chemical messenger$ such as a hormone0 2he external

    messenger (signal) may cause a conformational change

    in the protein (receptor) that relays the message to the

    inside of the cell0

     .2P

    5n1ymes

    Signal

    6eceptor 

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            )        &

    &ell-cell recognition. Some glyco7proteins ser/e as

    identification tags that are specifically recogni1ed

    by other cells0

    Intercellular 'oining. Membrane proteins of ad,acent cells

    may hoo8 together in /arious 8inds of ,unctions$ such asgap ,unctions or tight ,unctions

    ttachment to the cytos)eleton and e*tracellular matri*

    ("&+. Microfilaments or other elements of the

    cytos8eleton may be bonded to membrane proteins$

     a function that helps maintain cell shape and stabili1es

     the location of certain membrane proteins0 Proteins that

     adhere to the 5CM can coordinate extracellular and

     intracellular changes

    .

    .

    .

    9lyco7

    protein

    Cell Adhesion

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    Cell Adhesion

    %ycocalyx

    :vecro:li'e ogliosaccharides that

    bind and hold to other cells

    -ight unctions

    : seal

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    Membrane Junctions

    • Gap Junctions- These spaces allowchemicals,ions to pass through thereby allowingcell to cell communication. CONNEXONS are thetubes which are seen between gap junctions.

    • Desmosomes !nchoring junctions" pre#ent cells$rom being pulle% apart.

    • Tight Junctions- &mpermeable Junctions. 'hile

    cells are boun% together they are lea(proo$ at these junctions.

    l b

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    )lasma Membrane

    Speciali*ations• Membrane junctions

    • Tight junctions

    • +esmosomes

    • ap junctions

    Figure 3.3

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    Desmosomes consist ofa regionbet*een t*oad9acentcells *herethe a$$osed$lasma

    membranesarese$arated byabout 5= nmand have a

    denseaccumulation of $roteinat thecyto$lasmic

    surface of

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    Tight Junctionis formed *hen the extracellular surfaces of t*oad9acent $lasma membranes are 9oined togetherso that there is no extracellular s$ace bet*een

    them6 x

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    gap unction

    consists of $rotein channels lin'ing the cytosols of ad9acent cells

    In the region of the ga$ 9unction0 the t*o o$$osing $lasma membranescome *ithin 5 to > nm of each other0 *hich allo*s s$eci;c $roteins fromthe t*o membranes to 9oin0 forming small0 $rotein: lined channels lin'ing

    the t*o cells6

    C ll : ti

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    Cell :unctions

    • Long7lasting or permanent connections bet3eenad,acent cells$ types of cell ,unctions

    2ight ,unctions pre/ent

    fluid from mo/ing

    across a layer of cells

    2ight ,unction

    ;0< =m

    % =m

    Space

    bet3een

    cellsPlasma membranes

    of ad,acent cells

    5xtracellular 

    matrix

    9ap ,unction

    Tight 'unctions

    ;0% =m

    Intermediate

    filamentsDesmosome

    /ap

     'unctions

     .t tight 'unctions$ the membranes of 

    neighboring cells are /ery tightly pressed

    against each other$ bound together by

    specific proteins (purple)0 !orming continu7

    ous seals around the cells$ tight ,unctions

    pre/ent lea8age of extracellular fluid across

     . layer of epithelial cells0

    Desmosomes (also called anchoring 

     junctions) function li8e ri/ets$ fastening cells

    2ogether into strong sheets0 Intermediate

    !ilaments made of sturdy 8eratin proteins

     .nchor desmosomes in the cytoplasm0

    /ap 'unctions (also called communicating 

     junctions) pro/ide cytoplasmic channels from

    one cell to an ad,acent cell0 9ap ,unctions

    consist of special membrane proteins that

    surround a pore through 3hich ions$ sugars$

    amino acids$ and other small molecules may

    pass0 9ap ,unctions are necessary for commu7

    nication bet3een cells in many types of tissues$

    including heart muscle and animal embryos0

    2I9>2 :?#C2I-#S

    @5SM-S-M5S

    9.P :?#C2I-#S

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    Outline

    • Introduction

    • Membranes• Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus

    • "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    !tructure o"#nimal Cells

    Cell Video

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    Outline

    • Introduction

    • Membranes

    • Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus• "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

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    Outline

    • Introduction

    • Membranes

    • Membrane Structure

    • Membrane unctions

    • Cell Organelles• !ucleus• "ibosomes

    • #ndo$lasmic "eticulum

    • %olgi A$$aratus

    • #ndosomes• Mitochondria

    • &ysosomes

    • Peroxisomes

    • Cytos'eleton

    The 0ucleus nd The 0uclear "n$elope

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    #ucleus

    #ucleus#ucleolusChromatin

    #uclear en/elopeInner membrane-uter membrane

    #uclear pore

    6ough 56

    Pore

    complex

    %urface of nuclear

    en$elope.

    Pore comple*es (T"+. 0uclear lamina (T"+. 

    &lose-up of 

     nuclear 

    en$elope

    6ibosome

    % =m

    % =m

    ;0< =m

    The 0ucleus nd The 0uclear "n$elope

    • 6epository for genetic material called chromatin - @#. and proteins•   Nucleolus:  holds chromatin and ribosomal subunits 7 region of intensi/e

    ribosomal 6#. synthesis•  Nuclear envelope Surface of nucleus bound by t3o phospholipid bilayer

    membranes 7 @ouble membrane 3ith pores•   Nucleoplasm semifluid medium inside the nucleus

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    Cell $rganelles

    • %ucleus

    !ic'name1A -he Control Center

    Function1 holds the D!AParts1

    !ucleolus1 dar' s$ot in the middle of thenucleus that hel$s ma'e ribosomes

    Chromatin1 loosely coiled D!A 2cells not dividing4t*o ty$es ( hetero?? (dar'

    : eu?? : light

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    Chromosomes• @#. of eu8aryotes is di/ided into linear chromosomes0• 5xist as strands of chromatin$ except during cell di/ision

    • >istones associated pac8aging proteins

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    •Mitochondria –Double membrane –Mitochondrial 2maternal4 D!A0 – re$licates inde$endently from the cell

     APo*er +ouse of the cell• Food converted into energy

     –Adenosine tri$hos$hate 2A-P4

    • Consumes Oxygen0 $roduces CO5

    +itochondria

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    +itochondria• Sites of cellular respiration$ .2P synthesis

    • Bound by a double membrane surrounding fluid7filled matrix0

    • 2he inner membranes of mitochondria are cristae• 2he matrix  contains en1ymes that brea8 do3n carbohydrates and

    the cristae house protein complexes that produce .2P

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    5ndomembrane System• Compartmentali1es cell$ channeling passage of molecules

    through cells interior0• 5ndoplasmic reticulum• 6ough 56 7 studded 3ith ribosomes

    • Smooth 56 7 fe3 ribosomes

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    6ough 56

    • 6ough 56 is especially abundant in cells that secrete proteins0

    •  .s a polypeptide is synthesi1ed on a ribosome attached to

    rough 56$ it is threaded into the cisternal space through a

    pore formed by a protein complex in the 56 membrane0

    •  .s it enters the cisternal space$ the ne3 protein folds into its

    nati/e conformation0• Most secretory polypeptides are glycoproteins, proteins to

    3hich a carbohydrate is attached0

    • Secretory proteins are pac8aged in transport $esicles that

    carry them to their next stage0

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    6ough 56• 6ough 56 is also a membrane factory0

    • Membrane7bound proteins are synthesi1ed directly into the

    membrane0

    • 5n1ymes in the rough 56 also synthesi1e phospholipids from

    precursors in the cytosol0

    •  .s the 56 membrane expands$ membrane can be transferred

    as transport /esicles to other components of theendomembrane system0

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    Smooth 56

    • 2he smooth 56 is rich in en1ymes and plays a role in a/ariety of metabolic processes0

    • 5n1ymes of smooth 56 synthesi1e lipids$ including oils$

    phospholipids$ and steroids0

    • 2hese include the sex hormones of /ertebrates and adrenal

    steroids0• In the smooth 56 of the li/er$ en1ymes help detoxify poisons

    and drugs such as alcohol and barbiturates0

    • Smooth 56 stores calcium ions0

    • Muscle cells ha/e a speciali1ed smooth 56 that

    pumps calcium ions from the cytosol and storesthem in its cisternal space0

    • Dhen a ner/e impulse stimulates a muscle cell$

    calcium ions rush from the 56 into the cytosol$

    triggering contraction0

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    "ibosomes-sites of $rotein synthesis6

    -not membrane:bound

    - consists of a small and larger subunit0

    - consists of ribosomal "!A 2r"!A4 and some @=

    structural $roteins6

    -.ound ribsosomes ma'e $roteins for ex$ort0 non:boundribosomes ma'e $roteins for internal use

    -

    Most $lentiful organelle in the cell

    6ibosomes

    http://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookglossR.html%23ribosomal%20RNAhttp://www.emc.maricopa.edu/faculty/farabee/BIOBK/BioBookglossR.html%23ribosomal%20RNA

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    6ibosomes• 6ibosomes are 6#.7protein complexes composed of t3o

    subunits that ,oin and attach to messenger 6#.0• Site of protein synthesis

    •  .ssembled in nucleoli

    566ibosomes Cytosol

    !ree ribosomes

    Bound ribosomes

    Largesubunit

    Small

    subunit

    T"+ showing "R and ribosomes Diagram of a ribosome

    ;0< =m

    5ndoplasmic reticulum (56)

    &ysosomes1

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    &ysosomes1

    circular0 but bigger than ribosomes!ic'name1 AClean:u$ Cre*s

    Function1 to brea' do*n food into $articles the rest of thecell can use and to destroy old cells

    Intracellular digestion

    "eleases nutrients

    .rea'do*n of *aste

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    %olgi Com$lex

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    'essicles• Peroxisomes

    • +ydrogen Peroxide generated and degraded todetoxify the cell

    • Vessicles• Material trans$ort

    •Vacuole7 stores *ater

    • Plastids7 &euco$lasts0 a'a amylo$lasts store starch0 $rotein or

    oils67 Chromo$lasts store bright color $igments

    Microtubules

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     –&arge0 hollo* tubes of tubulin$rotein1

    attach to centrosomestrengthen cell and anchor organelles

    change cell sha$e

    move vesicles *ithin cell 2'inesin and

    dynein4form s$indle a$$aratus

    Form cilia and )agella

    C i l i h

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    Centrioles forms$indle

    a$$aratus duringcell division

    Centrosome1

    cyto$lasmsurroundingcentriole

    Centrioles in the

    Centrosome

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    Membrane Bound -rganelles

    • Lysosomes E /esiclecontaining digesti/een1ymes that brea8 do3nfoodFforeign particles

    • Gacuoles E food storageand 3ater regulation

    • Peroxisomes 7 containen1ymes that cataly1e the

    remo/al of electrons andassociated hydrogenatoms

    (a Phagocytosis lysosome digesting food

    % =m

    Lysosome contains

    acti/e hydrolytic

    en1ymes

    !ood /acuole

    fuses 3ith

    lysosome

    >ydrolytic

    en1ymes digest

    food particles

    @igestion

    !ood /acuole

    Plasma membrane

    Lysosome

    @igesti/e

    en1ymes

    Lysosome

    #ucleus

    C t 8 l t

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    Cytos8eleton• 2he eu8aryotic cytos8eleton is a net3or8 of

    filaments and tubules that extends from thenucleus to the plasma membrane that supportcell shape and anchor organelles0

    • Protein fibers

    • .ctin filaments

    • cell mo/ement

    • Intermediate filaments• Microtubules

    • centrioles

    &entrioles

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    &entrioles

    • Centrioles are shortcylinders 3ith a & H ;

    pattern of microtubule

    triplets0

    • Centrioles may bein/ol/ed in microtubule

    formation and

    disassembly during cell

    di/ision and in theorgani1ation of cilia and

    flagella0

    Cilia and !lagella

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    Cilia and !lagella• Contain speciali1ed arrangements of microtubules•  .re locomotor appendages of some cells• Cilia and flagella share a common ultrastructure

    (a

    (c

    (b

    -uter microtubule

    doublet

    @ynein arms

    Central

    microtubule

    -uter doubletscross7lin8ing

    proteins inside

    6adial

    spo8e

    Plasma

    membrane

    Microtubules

    Plasma

    membrane

    Basal body

    ;0< =m

    ;0% =m

    ;0% =m

    Cross section of basal body

    2riplet

    2he 9olgi apparatus

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    2he 9olgi apparatus• The Golgi apparatus is the shipping and receiving center for cell

     products.•

    Many transport /esicles from the 56 tra/el to the /olgi apparatus formodification of their contents0• 2he 9olgi is a center of manufacturing$ 3arehousing$ sorting$ and

    shipping0• 2he 9olgi apparatus consists of flattened membranous sacscisternae

    loo8ing li8e a stac8 of pita bread0• 2he 9olgi sorts and pac8ages materials into transport /esicles0

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    !unctions -f 2he 9olgi .pparatus

    25M of 9olgi apparatus

    cis face(Arecei/ing side of 

    9olgi apparatus)

     Gesicles mo/e

    from 56 to 9olgi Gesicles alsotransport certain

    proteins bac8 to 56

      Gesicles coalesce to

    form ne3 cis 9olgi cisternae

      Cisternal

    maturation

    9olgi cisternae

    mo/e in a cis7

    to7trans

    direction

      Gesicles form andlea/e 9olgi$ carrying

    specific proteins to

    other locations or to

    the plasma mem7

    brane for secretion Gesicles transport specific

    proteins bac83ard to ne3er 

    9olgi cisternae

    Cisternae

    trans face

    (Ashipping side of 

    9olgi apparatus)

    ;0% ; =m1

    !

    2

    9olgi

    apparatus

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    &ilia and 3lagella• Cilia (small and numerous) and flagella (large and single)

    ha/e a & H pattern of microtubules and are in/ol/ed incell mo/ement0• Cilia and flagella mo/e 3hen the microtubule doublets

    slide past one another0• 5ach cilium and flagellum has a basal  body  at its base0

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    (a +otion of flagella. . flagellum

      usually undulates$ its sna8eli8e

      motion dri/ing a cell in the same

      direction as the axis of the

      flagellum0 Propulsion of a human

      sperm cell is an example of

    flagellatelocomotion (LM)0

    % =m

    @irection of s3imming

    Cilia and !lagella

    (b +otion of cilia. Cilia ha/e a bac87

      and7forth motion that mo/es the

    cell in a direction perpendicular

    to the axis of the cilium0 . dense

    nap of cilia$ beating at a rate of

    about J; to +; stro8es a second$

    co/ers this Colpidium, a

      fresh3ater proto1oan (S5M)0