Infrastructures for NMR, EM and X- rays for Translational ......• Bridging solution methods: from...
Transcript of Infrastructures for NMR, EM and X- rays for Translational ......• Bridging solution methods: from...
Infrastructures for NMR, EM and X-rays for Translational Research
H2020 INFRAIA 2014/15 Call
• Research Infrastructures for translating research on biological structures into innovation in biomedicine.
• expand the availability of structural biology services (X-ray and neutron scattering, advanced NMR and advanced imaging technologies) to new communities of users, and in particular to scientists with backgrounds other than structural biology, including from SMEs
• benefit translational research in drugs discovery, informed drugs and vaccine design and other fields like biotechnology and biomaterials.
• exploit synergies with relevant ESFRI Infrastructures (such as INSTRUCT, ESS, EUROBIOIMAGING, EU-OPENSCREEN).
Criterion 2 - Impact
Score: 4.50 (Threshold: 3.00/5.00 , Weight: 100.00%) Criterion 1 - Excellence
Score: 5.00 (Threshold: 3.00/5.00 , Weight: 100.00%) Criterion 2 - Impact
Score: 4.50 (Threshold: 3.00/5.00 , Weight: 100.00%) Criterion 3 - Quality and efficiency of the implementation
Score: 4.50 (Threshold: 3.00/5.00 , Weight: 100.00%)
Result: 16 jan 2016
Objectives (1)
• Access to X-ray data collection, NMR, EM, Protein Interactions methods
• Show possibilities of the new neutron source, the European Spallation Source (ESS)
• User access to integrated structural biology methodologies in coordination with the ESFRI project Instruct
• Access is based on translational impact and scientific excellence, no advanced knowledge of structural biology required
• Drug discovery and development: ligand fragment screening methods with users simply supplying suitable crystals
Objectives (2)
• Maintain / extend Europe’s leading role in structural biology: access of all European labs to the best available instruments
• Promote integration / expansion to new communities: joint research activities (JRA)
(i) structure-based small molecule inhibitor discovery (ligand screening)
(ii) the integrated study of membrane proteins
(iii) the study of macromolecules and their complexes in cells
• Training & dissemination workshops will be organized to expand the user base
• Strengthen links between industrial and academic structural biologists:
- collaborative networks
- training events
- new research opportunities
- showcasing new technologies
23 Partners
• Utrecht University • EMBL Grenoble, Hamburg, Heidelberg • Diamond Oxford • CERM – Florence • J.W. Goethe University Frankfurt • Netherlands Cancer Institute Amsterdam • CEITEC – Brno • CSIC – Madrid • FVB-FMP – Berlin • Soleil – Gif-sur-Yvette • MAX IV / Lund University • NeCEN Leiden
• LUMC – Leiden • ESRF – Grenoble • RALF-NMR – Grenoble/Lyon • Instruct – Oxford • Aarhus University • ESS – Lund • ELTE – Budapest • ITQB – Oeiras • Oulu University • Patras University • Weizmann Institute
14 Countries
Transnational Access
• NMR Utrecht, Frankfurt, Florence, Berlin, Brno, Lyon, Grenoble • EM
Brno, Diamond, EMBL-Heidelberg, Leiden, Madrid
• X-rays Diamond, EMBL-Grenoble, EMBL-Hamburg, ESRF, Lund, Soleil
• Macromolecular Interactions Amsterdam, EMBL Heidelberg
Three levels of access
• Structural Audit sample quality assessment for non-experts • Enhanced Support fully supported access for non-experts • High-End Data Collection full control over advanced equipment for expert users
So many modalities...
• Structural Audit - Structural Audit - Mail-in SAXS • Enhanced Support - X-ray structure - NMR data - Cryo-EM sample optimization - Macromolecular interactions - Advanced light imaging - Ligand and fragment screening • High-End Data Collection - Synchrotron data - High-field NMR - High-resolution EM
Basic • PAGE • UV/VIS
Quality • Stability • Aggregation • MALLS
Structure? • SAXS • Crystallisation
• Mail-In Sample to the NKI – Electronic Reporting – No user visits
Structural Audit (NKI)
•1-2 weeks visit for highly interactive project
Macromolecular Interactions (NKI)
MST
ITC
Transient FP
SPR
Access projects
A
• Projects will be reviewed by external international experts - Scientific Excellence of the proposed research theme - Relevance for Translational Research in Health, Biotechnology, or nanomaterials - Scientific Track Record of the team - Technical Feasibility
• Access will have to be transnational (member and associated states)
• EMBL: international organization can accept from any European country
• Access for users -outside- Europe is allowed, but limited to <20%
• Users that publish the results have access, exception for SMEs
Training
• Integrating X-ray crystallography and scattering with electron microscopy
• Bringing together X-rays and neutrons for crystal and solution scattering
• Bridging solution methods: from NMR to X-ray scattering and biophysics
• Structural biology approaches for drug development
• Studying macromolecular assemblies: the toolkit of methods
• Integrated methodologies and approached for structural biology
www.inext-eu.org 1 sept 2015
www.inext-eu.org 1 sept 2015
iNEXT Kickoff October 1-2, Utrecht The Netherlands
Instruct-NL
In 2012, Instruct-NL was established as an Instruct Affiliate Centre. In 2013, the main academic partners of the Instruct-NL became a full Instruct Centre. The former Affiliate Centre remains as an Instruct Network.
Instruct-NL Centre
Instruct-NL Network
Overview of Instruct-NL Centre
Year Project Centre Funding source Amount 2009 Equipment to establish protein facility Protein Facilty NWO (Large investment) 1.7M Euro 2009 Titan Krios to establish NeCEN NeCEN NWO (Large investment) 6.2M Euro 2010 Titan Krios to establish NeCEN NeCEN ERDF (EU
Structurefunds) 5.9M Euro
2010 Solid state DNP-NMR (400/800 MHz) Bijvoet Center NWO (Large investment) 5.7M Euro 2011 Bio-NMR Bijvoet Center EU Infrastructure 1.2M Euro 2012 PRIME-XS Bijvoet Center EU Infrastructure 1.0M Euro 2012 Membership of NL to ESFRI Instruct
(’12-’13) Multiple NWO Chemical Sciences 100k Euro
2012 Proteins@Work: National infrastructure for proteomics
Bijvoet Center NWO (National Roadmap)
13.5M Euro
2012 uNMR-NL: National infrastructure for ultra high resolution NMR (1.2 GHz)
Bijvoet Center NWO (National Roadmap)
18.5M Euro
2014 Membership of NL to ESFRI Instruct (’14)
Multiple Various institutes 50k Euro
Total 53.850k Euro
dr. Hans Wienk iNEXT Project Manager Utrecht University dr. Reinout Raijmakers director Bijvoet Center Utrecht University prof. Rolf Boelens coordinator Utrecht University dr. Tassos Perrakis deputy coordinator NKI, Amsterdam
www.inext-eu.org [email protected]
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