Gap Filling Comparison Workshop, September 18-20, 2006, Jena, Germany

Gap Filling Comparison Workshop, September 18-20, 2006, Jena, Germany

Corinna RebmannOlaf Kolle

Max-Planck-Institute for BiogeochemistryJena, Germany

Eddy covariance measurements and their shortcomings for the

determination of the net ecosystem exchange of carbon dioxide

Outline

• Introduction of measurement site and advection experiment

• Reasons for data gapsSpecial features of open path analyser

• Consequences for final flux data

• Summary

Measurement Site:

Wetzstein, Thuringia, Germany,

flux measurements established end of 2001

main towertower C tower B

tower D

tower A

measuring heights: Main tower: 30.0mTower C: 29.4m

ADVEX’06 (April 11– June 19, 2006)flux measurements for , H, E, CO2

CO2, wind and temperature profiles

The ADVEX Experiment

Advection experiment CarboEurope-IP:4 towers around the main tower:A, B, C, D: profiles of [CO2], T, u‘, v‘, w‘, T‘,tower B with CO2-fluxes below canopy,tower C and main tower with CO2-fluxes above canopy

60m

Why care about advection?

Eddy covariance theory is derived from tracer conservation equation with many simplifications which are only valid under homogeneous conditions

Data gaps are due to

• Maintenance interruptions, power failures, ice coating

• Instrumental problems• Non-turbulent conditions• Unfavoured wind directions (tower effects,

heterogeneous terrain)• Precipitation, fog events (open path

analyser)• high wind speeds

Wetzstein, main towerdata gaps (closed-path analyser)

Jan 1 – Aug 24, 2006

00:00

12:00

00:00

Tim

e

1.1. 1.3. 1.5. 1.7.

caused by maintainance, power failure, ice coating

1.9% gaps

00:00

12:00

00:00

1.1. 1.3. 1.5. 1.7.

after pre-selection ( high-frequency data)

3.5% gaps

00:00

12:00

00:00

Tim

e

1.1. 1.3. 1.5. 1.7.

Date

after stationarity test 1 ( diff >50%)

25.9% gaps

00:00

12:00

00:00

1.1. 1.3. 1.5. 1.7.

Date

after stationarity test 2 ( 30%<diff<50%)

42.1% gaps

data available

no data

Wetzstein, main tower and tower CApr 11 – Jun 19, 2006

data gaps caused by maintenance, power failures etc.

-100

-80

-60

-40

-20

0

20

40

60

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

prec

ipita

tion

(mm

)

15.4. 22.4. 29.4.1.5. 8.5. 15.5. 22.5. 29.5. 1.6. 8.6. 15.6.

Date

FCO2 TM

FCO2 TC

precip (mm)


data gaps caused by maintenance, power failures etc.

step Main tower (TM)

Tower C (TC)

1(maintenance etc)

3.6% 4.8%

2(after pre-selection)

3(after stationarity test 1)


time series of CO2-fluxes after pre-selection(eg Vickers & Mahrt 1997, JAOT14)

-40

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

rain

(mm

)

15.4. 22.4. 29.4.1.5. 8.5. 15.5. 22.5. 29.5. 1.6. 8.6. 15.6.

Date

FCO2 TM

FCO2 TC

rain (mm)


data gaps after pre-selection


Tower C (TC)

1(maintenance etc)

3.6% 4.8%


4.5% 30.2%


30.2%

Wetzstein, main tower and tower C

which data are rejected in case of open path-analyser?

-40

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

rain

(mm

)

1.5. 8.5. 15.5. 22.5. 29.5. 1.6. 8.6.

Date

FCO2 TM

FCO2 TC

rain (mm)

-40

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

rain

(mm

)

1.5. 2.5. 3.5. 4.5. 5.5. 6.5. 7.5. 8.5. 9.5. 10.5. 11.5. 12.5. 13.5.

Date

FCO2 TM

FCO2 TC

rain (mm)

24 of 624 half-hours (3.8%) rejected

April 30 – May 12, 2006, dry period


which data are rejected in case of open path-analyser?

-40

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

rain

(mm

)

1.5. 8.5. 15.5. 22.5. 29.5. 1.6. 8.6.

Date

FCO2 TM

FCO2 TC

rain (mm)

-40

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0.0

1.0

2.0

3.0

4.0

rain

(mm

)

14.5. 15.5. 16.5. 17.5. 18.5. 19.5. 20.5. 21.5. 22.5. 23.5. 24.5. 25.5. 26.5. 27.5. 28.5.

Date

FCO2 TM

FCO2 TC

rain (mm)

263 of 630 half-hours (41.7%) rejected!!!

May 13 – 28, 2006, rainy period

Wetzstein, main tower and tower C Apr 11 – Jun 19, 2006

consequences for dependencies on meteorological variables

GGsatGPP

GsatGPPday R

RaF

RFaNEE

,

,Michalis-Menten-relationship:see Falge et al. 2001, AFM107

NEE: net ecosystem exchange (µmol CO2 m−2 s−1)

PPFD: photosynthetic photon flux density (µmol quantum m−2 s−1)

a: ecosystem quantum yield (µmol CO2) / (µmol quantum)

FGPP,sat: gross primary productivity at saturating light (µmol CO2 m−2 s−1)

Rday: ecosystem respiration during the day (µmol CO2 m−2 s−1)

-30

-20

-10

0

10

NE

E(µ

mo

lms

)-2

-1

0 200 400 600 800 1000 1200 1400 1600 1800 2000

PPFD (µmol m s )-2 -1

day-time NEE, TM

day-time NEE, TC TM TC

a 0.057 0.061

FGPP,sat 24.6 27.6

Rday 5.4 4.1

r2 0.66 0.58

Wetzstein, main tower and tower C Apr 11 – Jun 19, 2006

consequences for dependencies on meteorological variables

GGsatGPP

GsatGPPday R

RaF

RFaNEE

,

,Michalis-Menten-relationship:see Falge et al. 2001, AFM107

NEE: net ecosystem exchange (µmol CO2 m−2 s−1)

PPFD: photosynthetic photon flux density (µmol quantum m−2 s−1)

a: ecosystem quantum yield (µmol CO2) / (µmol quantum)

FGPP,sat: gross primary productivity at saturating light (µmol CO2 m−2 s−1)

Rday: ecosystem respiration during the day (µmol CO2 m−2 s−1)

-30

-20

-10

0

10

NE

E(µ

mol

ms

)-2

-1

0 200 400 600 800 1000 1200 1400 1600 1800 2000

PPFD (µmol m s )-2 -1

day-time NEE, TM, if CT av.

day-time NEE, TMTM TM,

TC avTC

a 0.057 0.063 0.061

FGPP,sat 24.6 23.2 27.6

Rday 5.4 5.1 4.1

r2 0.66 0.59 0.58


time series of CO2-fluxes with stationarity tests

-40

-30

-20

-10

0

10

20

FC

O(µ

mo

lms

)2

-2-1

1.5. 3.5. 5.5. 7.5. 9.5. 11.5. 13.5. 15.5. 17.5. 19.5.

Date & Time

FCO2 TM

FCO2 TC

FCO2 TM if stat2

FCO2 TC if stat2

-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

0

100

200

300

400

500

600

700

800

900

1000

R(W

m)

G-2

9.5. 10.5. 10.5. 11.5. 11.5. 12.5. 12.5. 13.5. 13.5. 14.5. 14.5. 15.5.

Date

FCO2 TM

FCO2 TC

FCO2 TM if stat2

FCO2 TC if stat2

global radiation RG

May 8 – 14, 2006


When do instationaries occur?

0

5

10

15

num

ber

ofin

stat

ion

ary

dat

a(%

)

10 50 90 130

170

210

250

290

330

370

410

450

490

530

570

610

650

690

730

770

810

850

R (W m )G-2

TM

TC

Instationarities occur mainly atlow or zero radiation conditions

Wetzstein, main tower and tower CApr 11 – Jun 19, 2006data gaps summary


Tower C (TC)

1 3.6% 4.8%


4.5% 30.2%rainy, moist conditions


9.8% 33.2%

Low radiation conditions

Do we have perfect data now?

Are these data reliable as input for gap filling procedures?

Still missing:advective processesnight flux treatment

reliability check

HainichDrainage/advective fluxes

Data fromW. Kutsch

-20

-10

0

10

FC

O(µ

mo

lms

)2

-2-1 storage flux

turbulent flux

-10

-5

0

5

10

FC

O(µ

mol

ms

)2

-2-1 Horiz.Advection

running mean

0.0

1.0

qual

ityfla

gs

17.8. 18.8. 18.8. 19.8. 19.8. 20.8. 20.8.

Date & Time

physical/technical flag

stationarity flag

nighttime u* flag

12:00 12:00 12:00 12:00

Night-flux problem

• Weak turbulence• Instrumental problems, large footprints,

gravity waves• Turbulent flux is influenced by other

transport/storage processes→Site dependentsee eg: Lee, 1998

Aubinet et al, 2003, 2005Staebler and Fitzjarrald, 2004Feigenwinter et al, 2004

Night-flux corrections

Empirical:

Separate calm and turbulent periods, remove calm periods, fill the gap

u*-criterion mostly used

Aubinet et al. AER30, 2000

NEEnight versus u*

0.0

1.0

2.0

3.0

4.0

norm

aliz

ed

CO

-flu

x2

0

2

4

6

8

10

12

14

16

18

20

freq

uen

cy(%

)

0.0

250.

125

0.2

250.

325

0.4

250.

525

0.6

250.

725

0.8

250.

925

1.0

251.

125

1.2

251.

325

1.4

251.

525

1.6

251.

725

1.8

251.

925

u* (m s )-1

Wetzstein, n=7446

-40

-30

-20

-10

0

10

20

30

FC

O(µ

mol

ms

)2

-2-1

15.9. 17.9. 19.9. 21.9. 23.9. 25.9. 27.9. 29.9.

Date

WetzsteinNEE 2005, unrealistic high night-time fluxes

Wetzsteinwhen do high fluxes occur?

• u*>0.4m s-1• wind direction between 200° and 280° or 30° and 40°• neutral atmospheric conditions:

stability parameter: -0.0625<ζ<0.0625

(determined by M. Zeri)

→ turbulent upwind mixing from the valley

WetzsteinNEE 2005

after application of MZ criteria

-40

-30

-20

-10

0

10

20

30

FC

O(µ

mol

ms

)2

-2-1

15.9. 17.9. 19.9. 21.9. 23.9. 25.9. 27.9. 29.9.

Date

NEE MT, after MZ criteria

NEE MT, before MZ criteria

for 2005:72% data available58% data available

WetzsteinNEE 2005


0.0

1.0

2.0

3.0

4.0

norm

aliz

ed

CO

-flu

x2

0

2

4

6

8

10

12

14

16

18

20

freq

uen

cy(%

)

0.0

250.

125

0.2

250.

325

0.4

250.

525

0.6

250.

725

0.8

250.

925

1.0

251.

125

1.2

251.

325

1.4

251.

525

1.6

251.

725

1.8

251.

925

u* (m s )-1

Wetzstein, n=7446

0.0

1.0

2.0

3.0

4.0

norm

aliz

edC

O-f

lux

2

0

2

4

6

8

10

12

14

16

18

20

freq

uenc

y(%

)

0.02

50.

125

0.22

50.

325

0.42

50.

525

0.62

50.

725

0.82

50.

925

1.02

51.

125

1.22

51.

325

1.42

51.

525

1.62

51.

725

1.82

51.

925

u* (m s )-1

Wetzstein, n=4991

after selection criteria

Wetzsteinnight-time NEE 2005


-10

0

10

20

30

FC

O(µ

mo

lms

)2

-2-1

-20 -15 -10 -5 0 5 10 15 20 25 30

T (°C)air, 2m

NEE after pre-selection, stationary

NEE after pre-selection, stationary and MZ criteria

R10=3.9R10=3.0

WetzsteinNEE comparison during advection experiment


-30

-20

-10

0

10

20

FC

O(µ

mol

ms

)2

-2-1

11.5. 12.5. 13.5. 14.5. 15.5. 16.5. 17.5. 18.5. 19.5. 20.5. 21.5.

Date in 2006

MT, left after MZ criteria

MT, discarded with MZ criteria

TC

TS

SummaryAmount of data gaps strongly depending on:• site• type of quality check

(still no common agreement in CarboEurope-IP!)• type of analyser, weather pattern• threshold criteria for u*

(have to be objective, Gu et al. AFM128, 2005)

Derived dependencies on meteorological variables vary with data left after selection

→biased datasets

Reliability has to be tested against chamber and biometric measurements

Thanks for your attention!

Questions?

Gap Filling Comparison Workshop, September 18-20, 2006, Jena, Germany

Documents

Transcript of Gap Filling Comparison Workshop, September 18-20, 2006, Jena, Germany