DAVID david.abcc.ncifcrf/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID

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DAVID http://david.abcc.ncifcrf.gov/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID http://www.nature.com/nprot/journal/v4/n1/pdf/nprot.2008.211.pdf. Access tool from here. Upload dataset. Use test dataset. Dataset1_chicken affy.txt. Select Affy ID & gene list. - PowerPoint PPT Presentation

Transcript of DAVID david.abcc.ncifcrf/ Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVID

DAVID http://david.abcc.ncifcrf.gov/Genome Biol. 2003;4(5):P3 Analysis of gene lists using DAVIDhttp://www.nature.com/nprot/journal/v4/n1/pdf/nprot.2008.211.pdf

Access tool from here

Upload dataset

Dataset1_chicken affy.txt

Use test dataset

Select Affy ID & gene list

Select species

Select Gallus gallus as background

Results

Annotation chart view

(http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#summary)

What the chart means

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Results Download Input IDs

Results

Results

What the results mean

Downlaod rEsults

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Check supported data types

Start analysis

Use chicken affy dataset 1 Choose species Data typeType of test

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ResultsResults browse options

Flat Form

p-value

Plain Text

Browse results in graph mode

Expandimmune systemprocess

Tree View

Color scale is based on p-value

User manual

Earlier version

Supported data types

Dataset1_chicken affy.txt will not work as affy IDs are not an option that is available when using earlier version of the tool

OnlyChicken Geneproductsaccepted