Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4...

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Transcript of Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4...

Page 1: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 2: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 3: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 4: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 5: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Solution

A plant able to protect crops by producing mating disruption pheromones when

intercropped with the affected plant species.

Page 6: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 7: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

We present you

Page 8: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

The newest pest management method. Safe, sustainable and environmentally

friendly.

Page 9: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

OBJECTIVEReproduce insect sexual pheromone biosynthesis pathway in plants

WHICH INSECT?

Moths (Lepidopterans)

Page 10: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

OBJECTIVEReproduce insect sexual pheromone biosynthesis pathway in plants

WHICH INSECT?Moths (Lepidopterans)

WHY?• High impact as a worldwide plague

Worldwide presence of Helicoverpa armigera & Helicoverpa zea

Page 11: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

OBJECTIVEReproduce insect sexual pheromone biosynthesis pathway in plants

WHICH INSECT?Moths (Lepidopterans)

WHY?• High impact as a worldwide plague• Chemical simplicity of the pheromones

(Z)-11-Hexadecen-1-ol

(Z)-11-Hexadecenal (Z)-11-Hexadecenyl acetate

Page 12: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

H. a

rmig

era

A. tra

nsitella

E. alatus

16:CoA

Z11-16:CoA

DesaturaseAtrΔ11

ReductaseHarFAR

Acetyl transferase

EaDAcT

Alcohol Oxidase

FAO

(Z)-11-Hexadecen-1-ol

Alcohol

(Z)-11-Hexadecenyl acetate

Acetate

(Z)-11-Hexadecenal

Aldehyde

N. benthamiana

Page 13: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Original Organisms

Escherichia coli

Multigenic assembly

Agrobacterium tumefaciens / Rhizobium radiobacter

Nicotiana benthamiana

Page 14: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

NOT PREVIOUSLY ACHIEVED

Page 15: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Goldenbraid standard ≠ Biobricks standard

Parts adaptation with help from NRP_UEA_Norwich

3 parts sent to the registry:

DesaturaseAtrΔ11

ReductaseHarFAR

Acetyl transferase

EaDAcT

Bba_K1554001 Bba_K1554002 Bba_K1554003

Page 16: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Original Organisms

Escherichia coli

Multigenic assembly

Agrobacterium tumefaciens / Rhizobium radiobacter

Nicotiana benthamianaAgroinfiltration

Page 17: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

How can we know if the plant is producing our desired pheromones?

VOLATILE ORGANIC COMPOUNDS ANALYSIS

Headspace Solid-Phase Micro Extraction- Gas Chromatography/ Mass Spectrometry

Page 18: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 19: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Results:

20.00 25.00 30.00 35.00 40.00 45.00 50.00

100000020000003000000400000050000006000000700000080000009000000

1e+071.1e+071.2e+071.3e+071.4e+071.5e+071.6e+071.7e+071.8e+071.9e+07

2e+072.1e+072.2e+072.3e+072.4e+072.5e+07

Time-->

Abundance

TIC: Control P19 GFP 300914.D\data.ms

20.00 25.00 30.00 35.00 40.00 45.00 50.00

100000020000003000000400000050000006000000700000080000009000000

1e+071.1e+071.2e+071.3e+071.4e+071.5e+071.6e+071.7e+071.8e+071.9e+07

2e+072.1e+072.2e+072.3e+072.4e+072.5e+07

Time-->

Abundance

TIC: Ruta CIS hoja 300914.D\data.ms

(Z)-11-Hexadecen-1-ol

Alcohol

(Z)-11-Hexadecenyl acetate

Acetate

Page 20: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

More results:

(Z)-11-Hexadecenal

Aldehyde

Page 21: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

INSECT-PHEROMONE INTERACTION - ELECTROANTENNOGRAPHY

Moth antenna connection to two electrodes

Page 22: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

INSECT-PHEROMONE INTERACTION - ELECTROANTENNOGRAPHY

Detection of antenna electrical signals in response to pheromones

Page 23: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

What about the metabolic burden?

Page 24: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

16:CoA

Existing substrate

How much product?

Pheromone

Page 25: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

PREDICTIVE TOOL

MODEL

Flux Balance Analysis (FBA)a mathematical approach for analyzing the flux of reactions through a metabolic network.

Page 26: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

RESULTS:

OBJECTIVE : Maximize Palmitic acid flux (substrate) and Biomass

Coupled production yield

Substrate vs Biomass

Page 27: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

OBJECTIVES• Reduce metabolic cost for the plant• Increase release ratio• Avoid uncontrolled pheromone release

Page 28: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

WHERE?

OBJECTIVE: selective expression and pheromone production

GLANDULAR TRICHOMES SPECIFIC PROMOTER

Page 29: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 30: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

WHEN?

OBJECTIVE: Genetic switch implementation to controlpheromone production

INDUCTOR: CuSO4

• Inexpensive• Easily obtainable• Ease of use by the farmer

Page 31: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

0

0,2

0,4

0,6

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PNos CuSO4 - CuSO4 1mM CuSO4 10mM

Nor

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Flu

c/R

luc

x7.8

x3.6

LUCIFERASE ASSAY

• Firefly luciferase as a gene expression reporter

• Assay after induction with different CuSO4 concentrations

Page 32: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

How much pheromone is our plant able to produce in reality?

How much do we need to get the results we want? Is it enough?

Page 33: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

DIFUSSION PROCESS

Pheromones are molecules that can undergo a diffusion process moving away from it source?

Page 34: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

HEAT DIFUSSION EQUATION

2D

Temporal and spatialdistribution of

pheromone concentration

How do we solve it?

Numerically with theEuler method

Solution

Page 35: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

MOTHS RESPONSE

• Males Follow the gradientErratic random flight

• Females Erratic random flightPheromone emission

Page 36: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Netlogo

Page 37: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

OBJECTIVE: Ensure the Sexy plant to be completely safe in the field for living beings and the environment

NEEDS:• This plant is not the consumed plant • Unable to spread itself without control• Unequivocally identified in the field

✓✓✓

IDENTITY PRESERVATION

MALE STERILITY

Anthocyanin accumulation

Anther-specificpromoter (Ta29)and Barnase (RNAse)

Page 38: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a
Page 39: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

A Sexy Plant able to produce moth sex pheromones

2 genetic modules to control pheromone release Trichome specific expression Functional genetic switch

2 genetic modules to make a completely safe plant Identity preservation + Male-sterility

Detectable pheromone-insect interaction

Analysis of pheromone production capabilities of our plant metabolic network.

A Simulation Environment for the pheromone diffusion and moth response behaviour

Page 40: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a

Policy & Practices:Interaction with involved stakeholders and social diffusion of Synthetic Biology

• Bayer CropScience• National research Council (CSIC)• Agricultural Centre for Chemical Ecology (CEQA)• Cooperatives for Agrofood industry (FECOAV)

Collaborations: NRP_UEA_Norwich: Conversor and chromoproteins (biosafety) NRP_UEA_Norwich and Cambridge-JIC: Plants for iGEM Workshop Sheffield – Lab notation Paris Bettencourt – Newsletter and MOOC High School

Interlab Study

Submitted Parts: AtrΔ11 HarFAR EaDAcT Ta29 Biosafety module (Barnase + Blue Chromoprotein) Biosafety module (Barnase + Yellow Chromoprotein) Omega undercover

• Department of Crop and Forest Sciences - UDL• Sustainable Agriculture Group - UPV• Institute of Plant Molecular and Cell Biology (IBMCP).• School of Agricultural Engineering (ETSIAMN)

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VICERRECTORADO DE ALUMNOS Y EXTENSIÓN

UNIVERSITARIA

ETS DE INGENIERÍA AGRONÓMICA Y DEL

MEDIO NATURAL

Page 42: Presentación de PowerPoint2014.igem.org/files/presentation/Valencia_UPV_Championship.pdfPNos CuSO4 - CuSO4 1mM CuSO4 10mM c x7.8 x3.6 LUCIFERASE ASSAY • Firefly luciferase as a