Classification of Living Things. Taxonomy: Classification Taxonomy Song.
Natural History, Taxonomy, and Systematicsjmlynch/HPS323/documents/07a-NatHist.pdf10/14/2008 1...
Transcript of Natural History, Taxonomy, and Systematicsjmlynch/HPS323/documents/07a-NatHist.pdf10/14/2008 1...
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Natural History, Taxonomy, and Systematics
The last 300 years or so, or until I run out of time
Some Definitions
• Natural History – the study of the constituents of nature, their relationships with each other, and their respective places in the overall order of nature.
• Systematics – The study and construction of systems of classification.
• Taxonomy – The study and practice of filing things into a system of clasification.
Aristotle (384-322 BC)
Logical dichotomous division
Living genus
Plant Animal species/genus
Tree Shrub species
But that is not how Aristotle classified living things.
Historia Animalium
Botanical Practices of the Ancients
Theophrastus (371-287 BCE)
Dioscorides (ca. 60CE) Materia Medica
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The Herbalists
Medieval and Renaissance
Classification based on use
HerbsMedicines Food PlantsOilsDyes
No unified system
The Great Chain of BeingScala Naturea
John Ray (1627 – 1705)
Described over 18,500 plant “species”
“The first condition of a natural method must be that it neither splits plant groups between which apparent natural similarities exist nor lumps such with natural distinctions”
Natural Method / Artificial System
Similarity based on characters
Which characters?
Instramentalist approach
Joseph Pitton de Tournefort (1656-
1708)
“To know the plants is to know the exact names one has given to them on the basis of the structure of some of their parts.”
Criticized Ray for inconsistent use of characters
Formulation of genus concept
Described 698 genera – most adopted by Linnaeus
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Carl von Linné (1707 – 1778)
1735 – Systema Naturae
Established a unified foundation for the practice of botany
Linnaean hierarchy
Sexual system
Formalized Nomenclature
Binomial Latin Names Carolus Linnaeus
Generic reform
Formalizing Nomenclature
• International Botanical Congress (1905)
– Species Plantarum (1753)
• International Commission on Zoological Nomenclature (1892-1905)
– Systema Naturae 10th ed. Vol. 1 (1758-1759)
Linnaean Hierarchy
KingdomPhylum
ClassOrder Genus
Species
Modern Taxonomic Hierarchy: Botany
primary ranks- - -secondary ranks- - - - - - -
further rankskingdom (regnum)- - - - - - -
subregnumphylum (phylum)- - - - - - -
subphylumclass (classis)- - - - - - -
subclassisorder (ordo)- - - - - - -
subordofamily (familia)- - - - - - -
subfamilia- - -tribe (tribus)- - - - - - -
subtribusgenus (genus)- - - - - - -
subgenus- -
section (sectio)- - - - - - -subsectio- - -
series (series)- - - - - - -
subseriesspecies (species)- - - - - - -
subspecies- - -variety (varietas)- - - - - - -
subvarietas- - -form (forma)- - - - - - -
subforma
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Works of Linnaeus
• 33 Principal works
• 186 Dissertations/theses
– (1741 – 1776)
• Multiple editions of several works
– Systema NaturaeWent from 11 – 3000 pgs.
Philosophia Botanica
“151. The FOUNDATION of botany (4) is two fold, arrangement and nomenclature. …
Knowledge of botany bears on these hinges; thus all plants become known in a single year, at first sight, with no instructor and without pictures and descriptions, by means of stable recollections. „Ergo, qui hoc novit, Btanicus est, alius non.‟ ”
Translated by Stephen Freer, 2003.
A Taste of Linneaus
“216. The generic must be the same
within the same genus.”
“221. Generic names made from two
entire and separate words are to be
banished from the Commonwealth of
Botany.”
“249. Generic names 1½ feet long,
those that are difficult to pronounce or
are disgusting, should be avoided.”
“268. Taste is often variable, according
to the person doing the tasting;
therefore it should be excluded from
definitions.”
“330. A description may be longer or
shorter than it should be: Either is
wrong.”
The Swedish Empireca. 1658
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Much like the EnglishLove their Newton…
Linnaeus and the Natural Method
Species
Genera
Higher Rank
Georges-Louis Leclerc, Comte de Buffon (1707-1788)
Chief opponent of Linnaeus
All classification was inherently artificial
The only “real” category was the species indentified by membership in a common breeding community
Histoire Naturellle
Michel Adanson (1727 – 1806)
Use of multiple characters
Equal weight to all characters
Overall similarity
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Early 19th Century Taxonomy
Georges Cuvier (1769-1832)
Correlation of characters
Jean Baptiste Lamarck (1744-1829)
Tree thinking
Antoine Laurent de Jussieu (1748-1836)
Subordination of characters
Fixed, Changing, or Evolving
Darwin and Classification
“Thus on the view which I hold, the natural system is genealogical in its arrangement, like a pedigree; but the degrees of modification which the different groups have undergone, have to be expressed by ranking them under different so called genera, sub-families, families, sections, orders and classes.”
DARWIN’S TREES
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David Hull
Professor Emeritus Northwestern University Philosophy
1964 Indiana University, PhD - The Logic of Phylogenetic Taxonomy
Former President – PSA, Society of Systematic Zoology, ISHPSSB
Associate Editor, Systematic Zoology1975-1982
Science as a Process (1988)The Modern Synthesis
Population Genetics, Systematics, Palentology, Evolutionary Biology
Three Groups of Three:
R. A. FisherJ. B. S. HaldaneSewall Wright
Theodosius DobzhanskyGeorge Gaylord SimpsonErnst Mayr
Julian HuxleyC. D. DarlingtonE.B. Ford Evolution: The Modern Synthesis
(1942)
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Evolutionary Systematics
Julian Huxley – The New Systematics, 1940
Mayr – Simpson
Biological Species Concept
Phylogeny reconstruction based on inferences of evolutionary process
Detecting evolution at work -Huxley
Systematics is both a science and an art-Simpson
1902 - 1984
1904 - 2005
Numerical Taxonomy (Phenetics)
Principles of Numerical Taxonomy, Sokal and Sneath, 1963
Overall similarity
Neo-Adansonians
Methods must be objective, explicit, quantitative, and repeatable
Robert Sokal
Phylogenetic Systematics (Cladistics)
Gründzuge einer Theorie der Phylogenettischen Systematik, Willi Hennig, 1950
Phylogenetic Systematics, Hennig (translated by Davis and Zangler), 1966
Nested sets of monophyletic groups diagnosed by the discovery of synapomorphies.
Cladograms as hypotheses
Fundamental, methodological principles
A Taxonomy of Systematists
Phenetics
Evolutionary Systematics
Cladistics
Pattern Cladists
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Natural Selection in 9th Grade Biology
Variable set of characters with in a population
Transfer those characters to the next generation through reproduction
Random mutation
Selection
Genes mutate - Organisms are selected - Species Evolve
Science as a Selection Process
Variation in conceptualization of core ideas with in a research group
Transfer of those characters to the next generation
Change in ideas, theories, research methods, etc.
Selection pressure from journals, professional societies, and funding
Evo
lutio
na
ry
Pro
ce
ss