Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 –...
Transcript of Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 –...
![Page 1: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/1.jpg)
ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling
Marrakech, 27-30 October 2014
Modelling species niches and distributions: vision for the future
Antoine Guisan
Departement of Ecology and Evolution (DEE, FBM)
Institute of Earth Surface Dynamics (IDyST, FGSE)
OB
![Page 2: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/2.jpg)
1. Setting the scene
lundi 26 janvier 2015
Titre de la présentation 2
![Page 3: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/3.jpg)
3
Growing interest in predicting species distributions
Côté & Reynolds (2002) Science
Species Distribution
Models (SDMs)
0/ 0
000 o
f public
ations
year
Spectacular
increase of SDM
papers
Graphe tiré de Guisan et al. (2013) Ecology Letters
![Page 4: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/4.jpg)
4
G. E. Hutchinson (1903-1991)
Species only occur in suitable abiotic
conditions within their environmental
niche, and these can be discontinuous in
geographic space, not all accessible and
not all biotically suitable
Hutchinson (1957) Cold Spring Harbor Symposia on Quantitative Biology
Colwell & Rangel (2009) PNAS, Guisan et al. (2014) TREE
Temperature
Wa
ter fundamental
niche
N-dim
temperature
rain
fall
niche-
habitat
duality!
Species have niches: biological data
can hardly be spatially interpolated!
![Page 5: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/5.jpg)
Potential
distribution of
the species
Field
observations
Environmental
maps
presence
absence
wa
ter
Temperature
Guisan & Zimmermann (2000) Ecological Modelling
Guisan & Thuiller (2005) Ecology Letters
Model of the observed
environmental niche …
… …
5
Principle of species distribution models (SDMs)
Spatial
predictions
Data
collection
Statistical
modelling
![Page 6: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/6.jpg)
6
A major need for ecologically-meaningful
environmental maps
Radiations
Altitude
Climate: T, P, ..
Slope
Exposure
etc..
+ slope
+ solar traject.
+ meteo measures
e.g. www.unil.ch/rechalpvd
Soils
+ edaphic
measures
![Page 7: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/7.jpg)
Guisan & Hofer (2003)
J. Biogeography
Frog
Virtually applicable to all organisms
Lütolf et al.
(2006) J. Appl. Ecol.
Pellet et al. (2004)
Conservation Biology
Jaberg & Guisan
(2001) J. Appl. Ecol.
Patthey et al. (In review)
J. Wildlife Management
Maggini et al. (2006)
J. Biogeography
Maggini et al.
(2002)
Biodiversity &
Conservation
Moretti et al. (2006)
J. Biogeography Petitpierre et al.
(2012) Science
Le Lay et al.
(2010) Ecogr.
SDMs
See Guisan & Thuiller (2005) Ecol. Lett., Elith & Leathwick (2009)
AREES, Franklin (2010) CUP book
Soil fungi?
Soil bacteria?
![Page 8: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/8.jpg)
SDMs in fundamental sciences
Spatial
genetics
Community
assembly
Drivers of
biological
invasions
Species
distributions
Environmental
niche
Niche-habitat
duality
Dispersal/migrations
pathways
Biogeographic
patterns
8
![Page 9: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/9.jpg)
New potential distribution
in time or space
?
∆ Temperature
∆ Landuse
1A. modifying the
input climate maps
1B. providing input
maps for a distinct
study area
Deriving projections in space or time
Guisan & Zimmermann (2000) Ecological Modelling
Guisan & Thuiller (2005) Ecology Letters 9
2. reapplying
the model (i.e. the quantified niche)
![Page 10: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/10.jpg)
Thuiller et al.(2005) GCB, Engler et al. (2011) GCB
Graphs reflect the rates of plant species extinctions
in mountain ranges per elevation belt
L. alpinus
Androsace
E. myosuroides
D. octopetala
niche assumed to be ‘projectable’ in
a new range or a new time period
Biological invasions (projecting in space)
climate change (projecting in time)
Addressing global change issues
10
present
2030
![Page 11: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/11.jpg)
SDMs in Conservation Sciences
Discovering
populations
Habitat
restorations
Species
reintroduction
Anticipating
invasions
Climate
change
impacts
Reserve
selection Prioritization
Biodiversity
monitoring
![Page 12: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/12.jpg)
2. Vision for my future research at UNIL (DEE and IDYST)
lundi 26 janvier 2015
Titre de la présentation 12
![Page 13: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/13.jpg)
Thibaud et al. (2014) Methods in Ecology & Evolution 13
GLM
2.1 Methodological challenges
- Novel developments needed
- E.g. working more with “Virtual
Ecologist” (VE) framework
- Improving tools (e.g. R libraries,
‘migclim’, ‘ecospat’)
![Page 14: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/14.jpg)
Guisan et al. (20014) Trends in Ecology & Evolution 14
2.2 Theoretical challenges
Which niche are we modelling?
SDMs are
modeling the
realized
environmental
niche
not
colonized
available
climate excluded
by biotic
interactions
![Page 15: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/15.jpg)
15
Range/time 1 Range/time 2
change in niche limit
change in niche
centroid
reduced density of
occurrences (but
not empty)
Realized
niche in:
Effect of niche changes?
Broennimann et al. (2012) Global Ecol. & Biogeogr.
Guisan et al. (2014) Trends in Ecology & Evolution
![Page 16: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/16.jpg)
Pearman et al. (2008) Ecol. Letters Petitpierre et al. (2012) Science
16
Niche changes lower SDM performances
Juniperus
Corylus
Abies
Larix
Fagus
Carpinus
Picea
0.3
0.4
0.5
0.6
0.7
0.8
0 0.5 1.0 1.5 2.0 2.5 3.0
Intensity of niche change
Qu
alit
y o
f p
ast p
red
ictio
n
Dominant
Pioneer
regression line:
r-square = 0.81
P = 0.00345
In time (7 spp, Past -6K to Present)
In space (50 invasive plants EU – US)
Red: North-American spp invading Europe
Green: European spp invading North-Am.
niche overlap U
nfilli
ng
E
xp
an
sio
n
![Page 17: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/17.jpg)
Maiorano et al. (2013) GEB, Modified from Nogues-Bravo (2009)
Partial
realized
niches
a1 a2 a3
Pooled
niche
(close to
fundamental?)
a1+ a2+a3
t1+ t2 + t3
Building the niche through time or space
17
a = area
t = time
CF = compositional
factor (niche axis)
fundamental
niche
realized
niche
![Page 18: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/18.jpg)
18
Beech, Fagus sylvatica
K years BP
nic
he
ove
rla
p
(with c
urr
ent
nic
he)
Model
based on
pooled
niche
Model
based on
partial
niches
Maiorano et al. (2013) GEB,
![Page 19: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/19.jpg)
2 Center for Macroecology, Evolution and Climate,
University of Copenhagen Denmark
2.3 From species to communities
SDMs
Stacked SDM
![Page 20: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/20.jpg)
20
2.4 SDMs to support decisions?
year
0/ 0
00 o
f public
ations
without ‘decision’
with ‘decision’
Not so many used routinely!
Searching for
applications in
four fields of
conservation
Guisan et al. (2013) Ecology Letters
![Page 21: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/21.jpg)
21
Putting SDMs in a decision context
Identifying the problem
Defining the objectives
Defining possible actions
Consequences of actions
Trade-offs between costs and benefits of actions
SDMs e.g. which exotic
species may be
problematic?
SDMs e.g. reserve selection
options?
SDMs e.g. impacts of
translocation?
Un
certainty assessm
ent
SDMs e.g. mapping
confidence
limits for
predicted
distributions?
Decision
Guisan et al. (2013) Ecology Letters
![Page 22: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/22.jpg)
22
The ever insufficient science-policy dialog
Guisan et al. (2013) Ecology Letters
Science
• Scientists • Applied researchers • Modellers
Scientific
Knowledge and Tools
SDM
Development and Evaluation
Conservation
• Decision makers • Site managers • Practitioners
Conservation
Problems
Model-assisted
Decision-making
‘Translators’ • Individuals • Groups • Institutions
Uncovering requirements and defining needs for
synthesis
Synthe- sizing
Synthe- sizing
![Page 23: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/23.jpg)
23
2.5 Promoting multi-disciplinary research
Http://rechalpvd.unil.ch
![Page 24: Modelling species niches and distributions: vision for the future · 2015. 2. 9. · ECEM 2014 – Ecological Modelling Beyond boundaries: next generation modelling Marrakech, 27-30](https://reader035.fdocuments.net/reader035/viewer/2022071010/5fc8a7f0d528f16470617b95/html5/thumbnails/24.jpg)
Thanks for your attention
lundi 26 janvier 2015
Titre de la présentation 24