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![Page 1: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/1.jpg)
Imprinting in the news
• Colon Cancer- 3rd most deadly cancer in America
Loss of Imprinting (LOI) of the Igf2 gene correlates with colon
cancer
•With family history- 5X more likely to show LOI•Polyps detected- 3X more likely to show LOI•Personal history- 22X more likely to show LOI
Source- AP News, March 14, 2003
Result= Maternal Igf2 gene is turned on
Potential blood test to screen for colon cancer
![Page 2: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/2.jpg)
Genomic Imprinting
• Definition- Differential expression of two parental alleles– Only occurs in eutherians (placental,
nonmarsupial) mammals– Not in other vertebrates
• Of 20-some identified genes, most are involved in 1. Fetal growth
• Igf2, IgF2r, H19, Grb1
2. Brain development
• Prader-Willi syndrome (PS), Angelman syndromes (AS), Peg1/Mest
![Page 3: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/3.jpg)
Categories of imprinted genes
1. Fetal growth genes- Insulin-like growth factor-like II (IGF2) response pathway
• IGF2• Igf2r• Grb10• H19• Gnas• Rasgrf• Mash2
– Why?- Embryo develops in a parasite-like relationship with mother.
![Page 4: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/4.jpg)
Categories of imprinted genes
2. Brain development- – Prader Willi Syndrome- paternal
chromosome deletion– Angelman Syndrome- maternal
chromosome deletion– Why?- Any ideas?
![Page 5: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/5.jpg)
Prader-Willi Syndrome
• 1 in 15,000 live births
• mostly sporatic
• deletion at 15 q11-q13
• diagnosis at 2 years
• obesity, short, small hands/feet, unusual facial features, mild mental retardation
• compulsive overeaters
![Page 6: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/6.jpg)
A typical Prader-Willi patient
Prader Willi Syndrome- Due to paternal chromosome deletion
![Page 7: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/7.jpg)
• 1 in 25,000 live births
• mostly sporatic
• 80 % have deletion at 15q11-q13– Specifically mutation of UBE3A gene
Angelman Syndrome
![Page 8: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/8.jpg)
Angelman Syndrome
•Speech impairment
•None or minimal use of words
•Receptive and non-verbal communication skills higher than verbal ones
•Movement or balance disorder, usually ataxia of gait
•Behavioral uniqueness: any combination of frequent laughter/smiling; apparent happy demeanor
•easily excitable personality, often with hand flapping movements; hypermotoric behavior; short attention span
![Page 9: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/9.jpg)
Angelman Syndrome
Normal
–Angelman Syndrome- maternal chromosome deletion
Or 2 paternal chromosomes
Or an imprinting
defect
![Page 10: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/10.jpg)
Definitions• Androgenotes- two paternal genomes• Gynogenotes- two maternal genomes• Both of these (andro- and gyno-genotes)
result in an imbalance (increase or decrease) of expression of imprinted genes– Result is developmental abnormalities
Functional studies- Chimeras
+ Implant into
pseudopregnant female chimera
![Page 11: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/11.jpg)
Functional studies- Chimeras
• Androgenetic- oversized, small brains
• Gynogenetic- growth retarded, large brains (cortex)– Conclude- imprinted genes contribute to
rapid expansion of the cortex
![Page 12: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/12.jpg)
Turner syndrome
• 1/2000; females only• short stature, failure to mature sexually • Often learning difficulties, skeletal abnormalities,
hearing loss, liver dysfunction, heart and kidney abnormalities, infertility, and thyroid dysfunction
• Females with single X chromosome– If X from father- better verbal and social skills
than if X from mother– Conclude- Some imprinted genes on X
escape inactivation only if from father
Only 1 X chromosome
![Page 13: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/13.jpg)
Parent Offspring Conflict Hypothesis (Haig hypothesis)
• Conflict between male and female over allocation of maternal resources to offspring
• Dad uses imprinting to direct all resources to immediate offspring (not future litters)
• Mom uses imprinting to allocate resources to multiple litters – Thus, predict paternally expressed genes would
promote growth, maternally expressed genes should slow it down
– Prediction mostly hold true• Example- Igf2 (paternally expressed)-if defective=40%
reduction in growth
![Page 14: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/14.jpg)
Parent Offspring Conflict Hypothesis (Haig hypothesis)
Example – The Igf2 gene and its receptor Igf2r• Igf2 (paternally expressed)-if defective=40%
reduction in growth • Igf2r (Igf2 receptor)- if defective=increase growth• Igf2-/Igf2r- = normal
Another test- Ask if imprinting fails to occur in a monogomous species
The Beach mouse is entirely monogomous
….but imprinting still occurs, contrary to model
![Page 15: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/15.jpg)
Is the imprint erased during embryogenesis?
![Page 16: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/16.jpg)
Is the imprint erased during embryogenesis?
• Observation-Aparthenogenetic embryos generated from from immature embryos proceed to late developmental stage that from using mature embryos-
• Answer- Probably
Two general mechanisms proposed:
1. Passive process via direct methylation of Dnmt12. Active process via specific demethylation
![Page 17: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/17.jpg)
Is the imprint erased during embryogenesis?
• Evidence in support– Biallelic expression of imprinted genes
occurs in primordial germ cells– Igf2r imprinting control region (ICR) is
methylated in E8 embryos, but unmethylated E12.5 embryos
– Dnmt1 is at high levels during Igf2r maternal imprint
• Answer- Probably
![Page 18: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/18.jpg)
How are imprinted genes silenced?
S. Tilghman, Cell 96:185
![Page 19: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/19.jpg)
How are imprinted genes silenced?
S. Tilghman, Cell 96:185
Dnmt-/- mice-
Many imprinted genes (e.g. H19) reactivated
..but, Igf2 and Igf2r are silenced
Mechanism- Methylation interferes with transcription factor binding
Problems with model-
1. Promoters of silent Igf2 and Igf2r alleles are unmethylated2. One gene, Mash2, is unaffected by loss of methylation
![Page 20: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/20.jpg)
How are imprinted genes silenced?
S. Tilghman, Cell 96:185
Mechanism- Promoters compete
for a single enhancer
Problem with model-
Both H19 and Igf2 are expressed if H19 gene replaced with luciferase
Igf2 H19
![Page 21: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/21.jpg)
How are imprinted genes silenced?
S. Tilghman, Cell 96:185
Epigenetic marker binds to unmethylated DNA
Mechanism-Methylation serves two
purposes1. Inactivate a gene (e.g.
H19)2. Prevent binding of
epigenetic marker so that Igf2 is activated
Igf2 H19
Epigenetic insulator prevents enhancer from “talking to” Igf2
Evidence in support: if delete insulator element- both Igf2 and H19 expressed
![Page 22: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/22.jpg)
Evidence for chromatin boundary mechanism
Deletion of ICR- both genes expressedIdentify protein (called CTCF) that binds ICRCTCF cannot bind methylated DNA
Thorvaldsen and Bartolmei, Science 288:2145, 2000
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How are imprinted genes silenced?
S. Tilghman, Cell 96:185
Mechanism- Antisense transcription of unmethylated chromosome blocks sense strand transcription
Mechanism- Antisense RNA blocks sense strand transcription
![Page 24: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/24.jpg)
Normal expression
patterns
= ON
Prader-Willi Syndrome
![Page 25: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/25.jpg)
Normal expression
patterns
= ON
Prader-Willi Syndrome
In Prader-Willi deletion, maternal and paternal copies are silent
In Angelman, many genes are activated, but UBE3A is silenced
![Page 26: Imprinting in the news Colon Cancer- 3 rd most deadly cancer in America Loss of Imprinting (LOI) of the Igf2 gene correlates with colon cancer With family.](https://reader031.fdocuments.net/reader031/viewer/2022013011/56649e035503460f94aef23d/html5/thumbnails/26.jpg)
Prader-Willi Syndrome
Proposed mechanism of SNPRN imprinting
In Prader Wille, the Switch Initiator Site (SNSIS) is mutated in paternal chromosome, such that it can’t bind BD RNA
Imprintor gene
RNA (BD RNA)
SNSIS SNRPN gene
Female allele
Imprintor gene
RNA (BD RNA)
SNSIS SNRPN gene
Male allele
Dnmt
12 3