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Kinetika Kimia (Chemical Kinetics) Jaslin Ikhsan, Ph.D. Kimia FMIPA UNY

Transcript of jeikhsan.files.wordpress.comChemical reaction kinetics. reactants products • Chemical reactions...

  • Kinetika Kimia(Chemical Kinetics)

    Jaslin Ikhsan, Ph.D.

    Kimia FMIPA UNY

  • Course Summary.• Dependence of rate on concentration.• Experimental methods in reaction

    kinetics.• Kinetics of multistep reactions.• Dependence of rate on temperature.

  • Recommended reading.1. P.W. Atkins, Kimia Fisika (terjemahan), jilid 2, edisi keempat,

    2. P.W. Atkins, Physical Chemistry, 5th ed., Oxford:

    3. Gordon M. Barrow, Physical Chemistry

    4. Arthur M. Lesk, Introduction to Physical Chemistry

    Oxford University Press, 1994

    Jakarta: Erlangga, 1999.

    For E

    valuation Only.

    Copyright (c) by F

    oxit Softw

    are Com

    pany, 2004E

    dited by Foxit P

    DF

    Editor

  • Chemical Kinetics.

    Lecture 1.Review of Basic concepts.

  • Reaction Rate: The Central Focus of Chemical Kinetics

  • Chemical reaction kinetics.reactants products

    • Chemical reactions involve the forming and breaking of chemical bonds.

    • Reactant molecules (H2, I2) approach one another and collide and interact with appropriate energy and orientation. Bonds are stretched, broken and formed and finally product molecules (HI) move away from one another.

    • How can we describe the rate at which such a chemical transformation takes place?

    )(2)()( 22 gHIgIgH →+

    • Thermodynamics tells us allabout the energetic feasibilityof a reaction : we measure theGibbs energy ∆G for the chemical Reaction.• Thermodynamics does not tell ushow quickly the reaction willproceed : it does not providekinetic information.

  • Basic ideas in reaction kinetics.• Chemical reaction kinetics deals with the rate of velocity of chemical

    reactions.

    • We wish to quantify– The velocity at which reactants are transformed to products– The detailed molecular pathway by which a reaction proceeds (the reaction

    mechanism).

    • These objectives are accomplished using experimental measurements.

    • Chemical reactions are said to be activated processes : energy (usually thermal (heat) energy) must be introduced into the system so that chemical transformation can occur. Hence chemical reactions occur more rapidly when the temperature of the system is increased.

    • In simple terms an activation energy barrier must be overcome before reactants can be transformed into products.

  • Reaction Rate.• What do we mean by the term

    reaction rate?– The term rate implies that something

    changes with respect to something else.

    • How may reaction rates be determined ?

    – The reaction rate is quantified in terms of the change in concentration of a reactant or product species with respect to time.

    – This requires an experimental measurement of the manner in which the concentration changes with time of reaction. We can monitor either the concentration change directly, or monitor changes in some physical quantity which is directly proportional to the concentration.

    • The reactant concentration decreases with increasing time, and the product concentration increases with increasing time.

    • The rate of a chemical reaction depends on the concentration of each of the participating reactant species.

    • The manner in which the rate changes in magnitude with changes in the magnitude of each of the participating reactants is termed the reaction order.

    [ ] [ ]dtPd

    dtRdR =−=Σ

    Productconcentration

    Reactant concentration

    Net reaction rateUnits : mol dm-3 s-1

    [R]t

    [P]t

    time

  • Rate, rate equation and reaction order : formaldefinitions.

    • The reaction rate (reaction velocity) R is quantified in terms ofchanges in concentration [J] of reactant or product species J with respect to changes in time. The magnitude of the reaction rate changes as the reaction proceeds.

    [ ] [ ]dtJd

    tJR

    Jt

    JJ υυ

    1lim10

    =∆

    ∆=

    →∆ [ ] [ ] [ ]dt

    OHddtOd

    dtHdR

    gOHgOgH

    222

    222

    21

    21

    )(2)()(2

    =−=−=

    →+

    • Note : Units of rate :- concentration/time , hence RJ has units mol dm-3s-1 .υJ denotes the stoichiometric coefficient of species J. If J is a reactant υJis negative and it will be positive if J is a product species.

    • Rate of reaction is often found to be proportional to the molarconcentration of the reactants raised to a simple power (whichneed not be integral). This relationship is called the rate equation.The manner in which the reaction rate changes in magnitude with changes in the magnitude of the concentration of each participating reactant species is called the reaction order.

  • Problem Example:

    The rate formation of NO in the reaction: 2NOBr(g) ----> 2NO(g) + Br2(g)

    was reported as 1.6 x 10-4 mol/(L s).What is the rate of reaction and the rate of consumptionof NOBr ?

  • Products→+ kyBxA

    [ ] [ ] [ ] [ ]βα BAkdtBd

    ydtAd

    xR =−=−= 11

    rate constant k

    stoichiometriccoefficients

    empirical rateequation (obtainedfrom experiment)

    α, β = reactionorders for thereactants (gotexperimentally)Rate equation can not in

    general be inferred fromthe stoichiometric equationfor the reaction.

    Log [A]

    Slope = α

    Log R Log R

    Log [B]

    Slope = β

  • ClBrIXHXXH

    ,,222

    =→+Different rate equations

    imply different mechanisms.

    [ ] [ ][ ]

    [ ] [ ][ ][ ][ ]

    [ ] [ ][ ] 2/122

    22

    2

    2/122

    22

    22

    22

    2

    1

    2

    2

    ClHkdtHCldR

    HClClHBrHBrkBrHk

    dtHBrdR

    HBrBrH

    IHkdtHIdR

    HIIH

    ==

    →+

    ′+

    ==

    →+

    ==

    →+• The rate law provides an important guideto reaction mechanism, since any proposedmechanism must be consistent with theobserved rate law.• A complex rate equation will imply a complexmultistep reaction mechanism.• Once we know the rate law and the rateconstant for a reaction, we can predict therate of the reaction for any given compositionof the reaction mixture.• We can also use a rate law to predict the concentrations of reactants and products atany time after the start of the reaction.

  • Zero order kinetics. The reaction proceeds at the same rate Rregardless of concentration.

    [ ]0AR ∝RRate equation :units of rate constant k :mol dm-3 s-1

    0when0 ==

    =−=

    taa

    kdtdaR

    ][A

    integrateusing initialcondition

    02/10

    2/1

    02/1

    2

    2when

    ak

    a

    aat

    ∝=

    ==

    ττ

    τhalf life :

    0)( aktta +−=a

    t

    slope = -k

    0adiagnosticplot

    2/1τ

    0ak

    slope21

    =

  • products→kAFirst order kinetics. First order differentialrate equation.

    [ ]dtAdrate t−=

    Initialconcentration a0

    kadtda

    =−

    Initial condition

    00 aat ==

    Solve differentialequation

    Separationof variables

    [ ]ktaeata kt −== − exp)( 00For a first order reaction the relationship:[ ][ ] tt

    tt

    AkrateArate

    =∝

    )()( is valid generally for any time t.

    k is the first orderrate constant, units: s-1

    Reactant concentrationas function of time.

  • 2/12

    2/1

    02/1

    ==

    ==

    u

    aat

    θθ

    τ

    kk693.02ln

    2/1 ==τ

    Half life τ1/2First order kinetics.

    1−→ sk

    [ ]

    [ ]

    kta

    tau

    ktaeata kt

    =

    −==

    −== −

    θ

    θexp)(exp)(

    0

    00 Mean lifetime of reactant molecule

    ( )k

    dteaa

    dttaa

    kt 1110 0

    00

    0

    === ∫∫∞ −∞τ

  • 1=u

    5.0=u

    25.0=u

    125.0=u

    0aau =

    2/02/1 aat == τ

    2/1τ

    kk693.02ln

    2/1 ==τ

    First order kinetics: half life.

    In each successive periodof duration τ1/2 the concentrationof a reactant in a first order reactiondecays to half its value at the startof that period. After n such periods,the concentration is (1/2)n of itsinitial value.

    half life independent of initial reactant concentration0a

  • 1st order kinetics 2nd order kinetics

    θθ −

    =

    =

    eu

    eata kt

    )(

    )( 0)(θu

    θθ

    +=

    +=

    11)(

    1)(

    0

    0

    u

    tkaata

    )(θu

    kt=θ tka0=θ

  • dm3mol-1s-1Second order kinetics: equalreactant concentrations. PA k→2

    0

    2

    0 aat

    kadtda

    ==

    =−

    separate variablesintegrate

    0

    11a

    kta

    +=

    a1

    slope = k

    t

    20

    2/1aat == τhalf life

    ( )tka

    ata0

    0

    1+=

    2/1τ

    ↑↓

    =

    02/1

    02/1

    02/1

    1

    1

    aas

    a

    ka

    τ

    τ

    τ

    rate varies assquare of reactantconcentration

    0a

  • 1st and 2nd order kinetics : Summary .Reaction Differential

    rate equationConcentrationvariation with

    time

    DiagnosticEquation

    HalfLife

    Products

    1→kAak

    dtda

    1=− [ ]tkata

    10 exp)(

    −=

    01 ln)(ln atkta +−=1

    2/12ln

    k=τ

    Products2 2→kA 2

    2akdtda

    =−

    taka

    ta

    02

    0

    1

    )(

    +

    =0

    21

    )(1

    atk

    ta+=

    022/1

    1ak

    Slope = - k1

    Slope = k2

    1st order

    2nd order

    DiagnosticPlots .

    ln a(t) 1/a(t)τ1/2

    a0t t

  • n th order kinetics: equal reactantconcentrations. PnA

    k→

    1

    1−naseparate variablesintegrate

    00 aat

    kadtda n

    ==

    =−( ) 1

    01

    111 −− +−= nn aktn

    a

    ( )knslope 1−=1≠n

    n = 0, 2,3,….. rate constant kobtained from slope t

    Half life

    ( ) 10

    1

    2/1 112

    −−

    = nn

    kanτ

    ↑↑<

    ↑↓>

    ∝ −

    02/1

    02/1

    102/1

    1

    1

    aasn

    aasn

    a n

    τ

    τ

    τ

    ( ) ( ) 01

    2/1 ln1112lnln ankn

    n

    −−

    −−

    =−

    τ2/1lnτ

    ( )1−−= nslope

    reaction order n determinedfrom slope

    0ln a

  • Summary of kinetic results. PnA k→2

    0

    02/1

    0

    aat

    aat

    ==

    ==

    τ

    Rate equation

    ReactionOrder dt

    daR −=Integratedexpression

    Units of k Half lifeτ1/2

    0 k ( ) 0aktta +−= mol dm-3s-1k

    a2

    0

    1 ka ( ) kttaa =

    0ln s

    -1

    k2ln

    2 2ka ( ) 011a

    ktta

    += dm3mol-1s-1

    0

    1ka

    3 3ka ( ) 202121

    akt

    ta+= dm

    6mol-2s-12

    023

    ka

    n nka ( ) 101 111 −− +−= nn aktna

    − −−

    10

    1 121

    1n

    n

    kan

  • Problem Examples:

    1. A first order reaction is 40% complete at the end of 1 h. What is the value of the rate constant? In how long willl the reaction be 80 % complete ?

    3. Derive the rate equation for reaction whose orders are: (a). one-half, (b). three and a-half, (c). 4, and (d). n !

    2. The half-life of the radioactive disintegration of radium is 1590 years. Calculate the decay constant. In how many years will three-quarters of the radium have undergone decay ?

  • Chemical Kinetics

    Lecture 2.Kinetics of more complex

    reactions.

    Jaslin Ikhsan, Ph.D.Kimia FMIPA

    Universitas Negeri Jogjakarta

  • Tujuan Perkuliahan:1. Menurunkan Rate Law dari Kinetika Reaksi yang lebih Kompleks,2. Menjelaskan Consecutive Reactions: a. Rate Determining Steps, b. Steady State Approximation.

    Reference:1. P.W. Atkins, Physical Chemistry, 5th ed,

    Oxford: 19942. Ira N. Levine, Physical Chemistry

  • PBA k→+Second order kinetics:Unequal reactant concentrations.

    rate equation

    kabdtdp

    dtdb

    dtdaR ==−=−=

    initial conditions

    00000 babbaat ≠===

    dm3mol-1s-1integrate usingpartial fractions slope = k( )baF ,

    ( ) ktaabb

    abbaF =

    =0

    0

    00

    ln1,t

  • Consecutive Reactions . PXA kk →→ 21•Mother / daughter radioactivedecay. Mass balance requirement:

    142

    131

    214214218

    106105 −−−− ×=×=→→

    skskBiPbPo

    xaap −−= 0The solutions to the coupledequations are :3 coupled LDE’s define system :

    [ ]

    [ ] [ ]{ }

    [ ] [ ] [ ]{ }tktkkk

    aktkaatp

    tktkkk

    aktx

    tkata

    2112

    01100

    2112

    01

    10

    expexpexp)(

    expexp)(

    exp)(

    −−−−

    −−−=

    −−−−

    =

    −=

    xkdtdp

    xkakdtdx

    akdtda

    2

    21

    1

    =

    −=

    −=

    We get different kinetic behaviour dependingon the ratio of the rate constants k1 and k2

  • Consecutive reaction : Case I.Intermediate formation fast, intermediate decomposition slow.

    12

    1

    2 1

    kkkk

  • 0

    0

    0

    apw

    axv

    aau

    =

    =

    =

    Initial reactant A morereactive than intermediate X .

    τ = k1t

    0 2 4 6 8 10

    Nor

    mal

    ised

    con

    cent

    ratio

    n

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    u = a/a0v = x/a0w = p/a0

    κ = k2/ k

    1 = 0.1

    Reactant AProduct P

    Intermediate X

    PXA kk →→ 21 121

    2 1

    kkkk

  • Consecutive reactions Case II:Intermediate formation slow, intermediate decomposition fast.

    1

    2

    kk

    PXA kk →→ 21

    key parameterCase II .Case II .12

    1

    2 1

    kkkk

    >>

    >>=κ

    Intermediate X fairly reactive.[X] will be small at all times.

    ener

    gy

    TS I

    AX

    P

    TS II

    reaction co-ordinate

    ∆GI‡

    ∆GII‡

    PXA kk →→ 21

    I : slow rds II : fast

    ∆GI‡ >> ∆GII‡

    Step I rate determiningsince it has the highestactivation energy barrier.

  • PXA kk →→ 21

    τ = k1t

    0 2 4 6 8 10no

    rmal

    ised

    con

    cent

    ratio

    n0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    u=a/a0v=x/a0w=p/a0

    κ = k2/k1 = 10Reactant A

    Product P

    Intermediate X

    τ = k1t

    0.0 0.2 0.4 0.6 0.8 1.0

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    u=a/a0v=x/a0w=p/a0

    A P

    X

    Intermediate concentrationis approximately constantafter initial induction period.

    12

    1

    2 1

    kkkk

    >>

    >>=κCase II .Case II .

    Intermediate Xis fairly reactive.Concentration ofintermediate Xwill be small atall times.

  • Rate Determining Step21 kk >>

    PXA kk →→ 21Fast Slow

    • Reactant A decays rapidly, concentration of intermediate species Xis high for much of the reaction and product P concentration risesgradually since X--> P transformation is slow .

    12 kk >>

    PXA kk →→ 21Slow Fast

    Rate Determining Step

    • Reactant A decays slowly, concentration of intermediate species Xwill be low for the duration of the reaction and to a good approximationthe net rate of change of intermediate concentration with time is zero. Hence the intermediate will be formed as quickly as it is removed.This is the quasi steady state approximation (QSSA).

  • Parallel reaction mechanism.

    YAXA

    k

    k

    →2

    1

    • We consider the kinetic analysis of a concurrent or parallel reaction scheme which is often met in real situations. • A single reactant species can form twodistinct products.We assume that each reaction exhibits 1st orderkinetics.

    k1, k2 = 1st order rate constants

    We can also obtain expressionsfor the product concentrationsx(t) and y(t).

    ( )[ ]

    ( )[ ]

    ( )[ ]{ }tkkkk

    aktx

    dttkkaktx

    tkkakakdtdx

    t

    2121

    01

    0 2101

    21011

    exp1)(

    exp)(

    exp

    +−−+

    =

    +−=

    +−==

    ∫• Initial condition : t= 0, a = a0 ; x = 0, y = 0 .• Rate equation:

    ( ) akakkakakdtdaR Σ=+=+=−= 2121

    [ ] ( )[ ]tkkatkata 2100 expexp)( +−=−= Σ( )[ ]

    ( )[ ]

    ( )[ ]{ }tkkkk

    akty

    dttkkakty

    tkkakakdtdy

    t

    2121

    02

    0 2102

    21022

    exp1)(

    exp)(

    exp

    +−−+

    =

    +−=

    +−==

    212/1

    2ln2lnkkk +

    ==Σ

    τ• Half life:

    2

    1

    )()(

    kk

    tytxLim

    t=

    ∞→

    Final product analysisyields rate constant ratio.

    • All of this is just an extension of simple1st order kinetics.

  • Parallel Mechanism: k1 >> k2

    τ = k1t0 1 2 3 4 5 6

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    u(τ)v(τ)w(τ)

    κ = k2//k1

    a(t)x(t)

    y(t)

    1.0=κ( ) 9079.0=∞v

    ( ) 0908.0=∞w

    ( )( ) 9989.90908.0

    9079.0=≅

    ∞∞

    wv( )

    )(10

    1.0

    2

    1

    1

    2

    ∞∞

    ==

    ==

    wv

    kk

    kkκ Computation

    Theory

  • Parallel Mechanism: k2 >> k1

    τ = k1t

    0 1 2 3 4 5 6

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    u(τ)v(τ)w(τ)

    a(t)

    x(t)

    y(t)10=κ

    0909.0)( ≅∞v

    9091.0)( ≅∞w

    ( ))(

    1.0

    10

    2

    1

    1

    2

    ∞∞

    ==

    ==

    wv

    kk

    kkκ

    ( )( ) 0999.09091.0

    0909.0=≅

    ∞∞

    wv

    Computation

    Theory

  • Reaching Equilibrium on the Macroscopic and Molecular Level

    N2O4NO2

    N2O4 (g) 2 NO2 (g)colourless brown

  • Chemical Equilibrium :a kinetic definition.

    • Countless experiments with chemical systems have shown that in a state of equilibrium, the concentrations of reactants and products no longer change with time.

    • This apparent cessation of activity occurs because under such conditions, all reactions are microscopically reversible.

    • We look at the dinitrogen tetraoxide/nitrogen oxide equilibrium whichoccurs in the gas phase.

    [ ][ ] ↓

    t

    t

    ON

    NO

    42

    2

    Equilibriumstate

    Kineticregime

    NO2

    N2O4conc

    entra

    tion

    N2O4 (g) 2 NO2 (g)colourless brown

    [ ][ ] eq

    eq

    ON

    NO

    42

    2

    Concentrations varywith time

    Concentrations timeinvariant

    Kinetic analysis.

    [ ][ ]22

    42

    NOkR

    ONkR

    ′=

    =s

    r

    Equilibrium:

    [ ] [ ][ ][ ] Kk

    kON

    NO

    NOkONk

    RR

    eq

    eqeq

    =′

    =

    ′=

    =

    42

    22

    2242

    sr∞→t

    ∞→t

    time

    EquilibriumconstantValid for any time t

  • A Bk

    k'First order reversible reactions : understanding the approach to chemical equilibrium.

    Rate equation

    bkkadtda ′+−= 010

    1===

    =+vu

    vuτ

    Rate equation in normalised formInitial condition

    00 0 === baatθτ +

    =+1

    1uddu

    Mass balance conditionSolution produces the concentration expressions

    0abat =+∀ ( ) [ ]{ }

    ( ) [ ]{ }τθ

    θτ

    τθθ

    τ

    −−+

    =

    −++

    =

    exp11

    exp11

    1

    v

    u

    Introduce normalised variables.

    ( )kktkk

    abv

    aau

    ′=′+=== θτ

    00 ( ) ( )( )[ ][ ]

    −+−−

    ==τθ

    τθτττ

    exp1exp1

    uvQ

    Reaction quotient Q

  • First order reversible reactions: approach to equilibrium.

    τ = (k+k')t

    0 2 4 6 8

    conc

    entra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    u (τ)v (τ)

    Equilibrium

    Kineticregime

    Reactant A

    Product B

    ( )( )( )∞∞

    =

    ∞→=

    uvQK τ

  • τ = (k+k')t

    0 2 4 6 8

    Q(τ

    )

    0

    2

    4

    6

    8

    10

    12

    10=θEquilibriumQ = K = θ

    Understanding the difference between reaction quotient Q and Equilibrium constant K.

    Approach toEquilibriumQ < θ

    ( )( )∞∞

    =uvK( ) ( )( )

    [ ][ ]

    −+−−

    ==τθ

    τθτττ

    exp1exp1

    uvQ

    kkKQt′

    ==→∞→ θ

  • C

    H

    H

    C

    H

    X

    C

    H

    H

    C

    H

    X n

    Chemical Kinetics.

    Lecture 3/4.Application of the Steady State Approximation: Macromolecules

    and Enzymes.

  • • Detailed mathematical analysis of complex reaction mechanisms is difficult.Some useful methods for solving sets of coupled linear differential rate equations include matrix methods and Laplace Transforms.

    • In many cases utilisation of the quasi steady state approximationleads to a considerable simplification in the kinetic analysis.

    Quasi-Steady State Approximation.QSSA

    PXA kk →→ 21

    Consecutive reactions k1 = 0.1 k2 .

    τ = k1t0.0 0.5 1.0

    Nor

    mal

    ised

    con

    cent

    ratio

    n0.0

    0.5

    1.0

    u(τ)

    v(τ)

    w(τ)

    intermediate X

    inductionperiod

    A P

    concentrationapprox. constant

    The QSSA assumes that after an initial induction period (during which the concentration x of intermediates X risefrom zero), and during the major part

    of the reaction, the rate of change of concentrations of all reaction intermediates are negligibly small.

    Mathematically , QSSA implies

    removalXformationX

    removalXformationX

    RR

    RRdtdx

    =

    ≅−= 0

  • Consecutive reaction mechanisms.

    A X Pk1

    k-1

    k2 Step I is reversible, step II isIrreversible.

    Coupled LDE’s can be solved via LaplaceTransform or other methods.

    ( )

    vddw

    vuddv

    vuddu

    φτ

    φκτ

    κτ

    =

    +−=

    +−=Rate equations

    ( ) ( ) [ ] ( ) [ ]{ }

    ( ) [ ] [ ]{ }

    ( ) [ ] [ ]{ }τβαταβαβ

    τ

    τβτααβ

    τ

    τββφκτααφκαβ

    τ

    −−−−

    −=

    −−−−

    =

    −−+−−−+−

    =

    expexp11

    expexp1

    expexp1

    w

    v

    u

    tkkk

    kk

    wvuwvu

    apw

    axv

    aau

    11

    2

    1

    1

    000

    0101

    ===

    =====++∀

    ===

    − τφκ

    ττ

    Note that α and β are composite quantities containingthe individual rate constants.

    φκβαφαβ

    ++=+=

    1Definition of normalised variablesand initial condition.

  • QSSA assumes that

    0≅τd

    dv

    ( )

    φκ

    φκ

    +≅

    =+−

    ssss

    ssss

    uv

    vu 0

    +

    −≅

    +−=

    τφκ

    φ

    φκφ

    τ

    expss

    ssss

    u

    ud

    du

    φκ

    τφκ

    φ

    +

    +

    −≅

    exp

    ssv

    +

    −−=

    +

    −+

    +

    −+

    =≅

    τφκ

    φ

    ττφκ

    φφκ

    φ

    τφκ

    φφκ

    φφτ

    τ

    exp1

    exp

    exp

    0

    dw

    vd

    dw

    ss

    ssss

    Using the QSSA we can develop moresimple rate equations which may beintegrated to produce approximateexpressions for the pertinent concentrationprofiles as a function of time.The QSSA will only hold provided that:

    • the concentration of intermediate is smalland effectively constant,

    and so :

    • the net rate of change in intermediateconcentration wrt time can be set equal tozero.

  • log τ

    0.01 0.1 1 10 100

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    u(τ)v(τ)w(τ)

    log τ

    0.01 0.1 1 10 100

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    uss(τ)

    vss(τ)wss(τ)

    A

    X

    P

    A

    X

    P

    A X Pk1

    k-1

    k2

    Concentration versus log time curvesfor reactant A, intermediate X andproduct P when full set of coupledrate equations are solved withoutany approximation.k-1 >> k1, k2>>k1 and k-1 = k2 = 50.The concentration of intermediate X isvery small and approximately constantthroughout the time course of theexperiment.

    Concentration versus log time curvesfor reactant A, intermediate X, andproduct P when the rate equationsare solved using the QSSA.Values used for the rate constantsare the same as those used above.QSSA reproduces the concentrationprofiles well and is valid.

    QSSA will hold when concentrationof intermediate is small and constant.Hence the rate constants for gettingrid of the intermediate (k-1 and k2)must be much larger than that forintermediate generation (k1).

  • log τ

    0.01 0.1 1 10 100

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2u(τ)v(τ)w(τ)

    log τ

    0.01 0.1 1 10 100

    norm

    alis

    ed c

    once

    ntra

    tion

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    uss(τ)

    vss(τ)wss(τ)

    A

    P

    X

    A

    P

    X

    A X Pk1

    k-1

    k2

    Concentration versus log time curvesfor reactant A, intermediate X andproduct P when full set of coupledrate equations are solved withoutany approximation.k-1

  • Macromolecule Formation : Polymerization.

    Polymerization of vinyl halidesoccurs via a chain growth additionpolymerization mechanism.C

    H

    H

    C

    H

    X

    C

    H

    H

    C

    H

    X n

    3 step process :• initiation• propagation• termination

    monomervinyl halideX = Cl, vinyl chloride

    polymerpoly(vinyl chloride)

    Polymer = large molar mass molecule(Macromolecule).

    Chain initiation : highly reactive transient molecules or active centers (suchas free radicals formed.Chain propagation : addition of monomer molecules to active chain endaccompanied by regeneration of terminal active site.Chain termination : reaction in which active chain centers are destroyed.

    We focus on radical addition polymerization . Kinetics of polymerization quantified via QSSA .

  • Free Radical Addition Polymerization.

    Initiation. reactive freeradicals generated

    ki = initiation rateconstantkp = propagationrate constantkT = kTC + kTD= termination rateconstant

    ⋅→+⋅⋅→

    1

    2MMR

    RI ikinitiatorspecies active monomer

    not kineticallysignificant

    ⋅→+⋅

    ⋅→+⋅

    ++

    +

    21

    1

    jk

    j

    jk

    j

    MMM

    MMMp

    p

    Termination

    mnk

    mn

    mnk

    mn

    PPMM

    PMMTD

    TC

    +→⋅+⋅

    →⋅+⋅ + termination via combinationtermination via disproportionation

    macroradical monomer

    Propagation .assume that kp is independentof chain length

  • Free Radical Addition Polymerization.Analysis of the steady state kinetics.

    Propagating macroradicalconcentration will be smallsince they are very reactiveso QSSA can be applied.polymerization rate = rate of chain propagation

    0≅dtdx

    removalxformationx

    removalxformationx

    rr

    rrdtdx

    =

    ≅−= 0

    macroradicalconcentrationmxkr

    dtdmR PPP ==−=

    monomer concentrationbimolecular propagationrate constant

    initiation rate ri

    Ti rr =

    22 xkr TT =

    ri can be left unspecifieddepends on initiationmechanism

    mkrk

    mxkrR

    T

    iP

    PPP2/1

    2

    =

    ==

    termination rate rT

    2 macroradicalsdisappear for eachincidence of termination

    22 xkr Ti =

    T

    i

    krx

    2=

  • Application of QSSA. Kinetics of enzyme reactions.

    Enzymes are very specific biological catalysts.A catalyst is a substance that increases the rate of a reaction without itself being consumed by the process.

    • A catalyst lowers the Gibbs energy of activation ∆G ‡ by providing a differentmechanistic pathway by which the reaction may proceed. This alternative mechanisticpath enhances the rate of both the forward and reverse directions of the reaction.• The catalyst forms an intermediate with the reactants in the initial step of the reaction( a binding reaction), and is released during the product forming step.• Regardless of the mechanism and reaction energetics a catalyst does not effect ∆H or∆G of the reactants and products. Hence catalysts increase the rate of approach to equilibrium, but cannot alter the value of the thermodynamic equilibrium constant.

    ∆H

    EA lowered A reactant molecule acted uponby an enzyme is termed a substrate.The region of the enzyme where thesubstrate reacts is called the activesite. Enzyme specificity depends onthe geometry of the active site and thespatial constraints imposed on this regionby the overall structure of the enzymemolecule.

    catalyst absent

    ener

    gy ∆EAcatalyst presentreactants

    products

    thermodynamicsunchanged

    reaction coordinate

  • O

    CH2OHH

    OHOHH

    H

    OH

    HH

    + ATPO

    CH2OPO32-H

    OHOHH

    OH

    OH

    H

    HH

    + ADP + H+

    hexokinasehexokinase

    glucose

    hexokinase

    glucose

    Space filling models ofthe two conformations ofthe enzyme hexokinase.(a) the active site is notoccupied. There is a cleft in the protein structure that allowsthe substrate molecule glucoseto access the active site.(b) the active site is occupied. The protein has closed aroundthe substrate.

    glucose glucose 6- phosphate

    Enzyme lock/key mechanism :natural molecular recognition.

  • binding pocket

    substrate

    Chymotrypsin :A digestiveenzyme .

    active site

    Naturalmolecularrecognition inaction.

  • Mechanism of enzyme action.

  • Classification of enzymes.

  • Michaelis-Menten kinetics.S + E ES E + P

    KM kc

    u=c/KM

    0 10 20 30 40 50

    Ψ=R

    Σ/k c

    e Σ

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    1.2

    uu

    keR

    cKcekR

    c

    M

    c

    +==Ψ

    +=

    Σ

    Σ

    ΣΣ

    1

    ceKkR

    uKc

    u

    M

    c

    M

    ΣΣ ≅

    ≅Ψ>≅Ψ

    ekRKc

    u

    c

    M

    11

    zero orderkinetics

    KM = Michaelis constant (mol dm-3)kc = catalytic rate constant (s-1)c = substrate concentration (mol dm-3)eΣ = total enzyme concentration (mol dm-3).

    Ψ

    u

    Ψ

    This is an example of a complexrate equation, where the reactionrate varies with reactant concentrationin a non linear way.

    Michaelis-Menten rateequation.

    ES complex decompositionto form products

    substratebinding enzyme/substrate

    complex

    u

  • Experimental rate equation : Rsb

    asdtds

    +=−=Σ

    substrateconcentration

    a, b = constants Proposed mechanism shouldproduce this rate law.Mechanism :

    E + S ES EP E + P

    enzymesubstrate

    productenzyme/substratecomplex

    enzyme/productcomplex Rate equations

    We analyse a simpler scheme which includes all the essentials.

    ( )

    pekxkdtdp

    peksekxkkdtdx

    xksekdtds

    22

    2112

    11

    −−

    −=

    −−+=−

    −=−p = [P]s = [S]

    E + S ES E + Pk1

    k-1

    k2

    k-2

    e = [E]free x = [ES]

  • What forms does the enzyme take?• free enzyme E• bound enzyme ES

    exe +=Σ

    Usually eΣ

  • This has the same formas the empirical rateequation observedexperimentally.

    01

    21

    02

    0121

    0210,

    sk

    kksek

    skkksekkRR

    ++

    =++

    ≅≅−

    Σ

    ΣΣΣ

    initial rateMichaelisconstant

    Fundamental kineticparameters : KM andkC .

    mol dm-3

    0

    00, sK

    sekRM

    C

    += ΣΣ

    2

    1

    21

    kkk

    kkK

    C

    M

    =

    += −

    catalytic rateconstant

    KM : enzyme/substratebindingkC : decomposition ofenzyme/substrate complex.

    Michaelis-Menten (MM)equation for steadystate enzyme kinetics.s-1

    How can we evaluate KM and kC?

    • Non linear least squares fitting to MM equation.• Suitable linearization of MM equation.

    ΣΣΣ

    +=eksek

    KR CC

    M 111

    00,

    SLB

    0,

    1

    ΣRΣ

    =ek

    KSC

    MLB

    0

    1s

    Σ

    =ek

    IC

    LB1ILB

    Lineweaver-BurkPlot.

    Lineweaver-BurkPlot.

  • CC

    M

    kskK

    k11

    0

    +=Σ

    unsaturatedenzyme kinetics

    saturatedenzymekinetics

    0

    00, sK

    sekekdtdpR

    M

    C

    +=== ΣΣΣΣ

    0

    0

    sKskk

    M

    C

    +=Σ

    composite rateconstant

    We consider two limiting behaviours.• s0 > KM saturated enzyme kinetics ; all active sites bound with substrate.

    Case USCase US

    0

    0

    0

    0

    1

    1

    1

    sKkk

    skK

    k

    kskKKs

    M

    C

    C

    M

    CC

    M

    M

    >>

  • 1112

    121

    1

    21

    kKkkkkKk

    kk

    U ==

    =≅+

    −−

    θθ When k2 >>k-1 , ES complexdecomposition to formproducts is faster than ESdecomposition back toreactants. The rds willinvolve the rate of ombinationof E and S to form the EScomplex. The ES complex will be short lived since itdoes not accumulate to formproducts.

    θ >> 1 scenario.

    E + S

    ES

    E + P

    k-1k1

    RDSk2

    RDS

    k-1 k2

    k1

    θ

  • Saturated enzyme kinetics : all active sites in enzyme bound with substrate.Have slow rate determining breakdown ofES complex to form products.

    Case S

    2

    0

    0

    0

    11

    1

    1

    kkkkk

    kskKKs

    Ks

    C

    C

    CC

    M

    M

    M

    =≅

    >

    >>

    Σ

    Σ

    The detailed form of KM and kC in terms of fundamental rate constants will depend on the nature of the mechanism.

    E + S ES EP E + Pk1

    k-1

    k2

    k-2

    k3

    k-3

    CC

    M

    kskK

    Re 11

    00,

    +=Σ

    ΣLB inverse plot will always pertain.

    Pre equilibrium

    321211

    111kKKkKkk

    K

    C

    M ++=Case S Pre equilibrium

    Case US

    3232

    1111kKkkkC

    ++=Slow ratedeterminingEP complexdecomposition.

    ES complex formation rds

    Slow ratedeterminingES->EPtransformation

  • adsorbedproducts

    gas phaseproducts

    ener

    gy

    gas phasepathway

    EG

    gas phasereactants

    adsorbedreactants

    EA

    ED

    ES

    Ej = activationenergy for step j.

    G : gas phase reactionA : adsorptionS : surface reactionD : desorption

    surfacecatalysedpathway Reaction intermediates stabilized via bonding

    to catalytic surface sites.

  • The Metal-Catalyzed Hydrogenation of Ethylene H2C CH2 (g) + H2(g) H3C CH3 (g)

    •adsH

    reaction betweenadsorbed species

    adsCHCH 32 −•

    •adsH

    •adsH

    adsHC 42

    dissociativeadsorption

    surface migration

  • Adsorption. Term used to describe the process whereby a molecule (theadsorbate) forms a bond to a solid surface (an adsorbent).

    number of sites occupied by adsorbate

    Σ

    =NNSθFractional surface coverage θ

    total number of adsorption sitesWhen θ = 1, NS = NΣ and anadsorbed monolayer is formed.The fractional coverage θ depends on pressure of adsorbing gas phase species.This θ = θ (p) relationship is called an adsorptionisotherm.

    A (g)

    Aads

    dynamicequilibrium

    surface

    Langmuir Adsorption Isotherm.Langmuir Adsorption Isotherm.Simple approach to quantitatively describe an adsorptionprocess at the gas/solid interface.

    Assumptions :• solid surface is homogeneous and contains a number of equivalent sites, eachof which is occupied by a single adsorbate molecule• a dynamic equilibrium exists between gas phase reactant and adsorbed species• no interactions between adsorbed species• adsorbed species localised, ∆ Hads is independent of coverage θ

  • associative adsorptionadsorption rate constant

    A (g) + S AadskA

    kD

    A2 (g) + S 2 AadskA

    kD

    desorption rate constantK measures affinityof a particularmolecule for anadsorption site.D

    A

    kkK =

    dissociative adsorptionsurface adsorption site

    ( ) θθ DA kpk =−1At equilibrium : RA = RDRate of adsorption :

    Langmuir adsorptionisotherm :associative adsorption.

    ( )θ−= 1pkR AA

    fractional coverageof vacant sites

    pressure KpKp+

    =1

    θ

    Rate of desorption :

    θDD kR = fractional surface coverage Kp111 +=

    θ

    θ1

    1

    slope = 1/K

    p1

  • A similar analysis can be done for dissociative adsorption.

    ( )2

    21

    θ

    θ

    DD

    AA

    kR

    pkR

    =

    −=

    At equilibrium :

    ( ) 221 θθ DADA

    kpk

    RR

    =−

    =

    Desorptionrate

    Adsorptionrate

    Adsorption isothermfor dissociativeadsorption.

    ( )

    KpKp

    Kppkk

    D

    A

    +=

    ==−

    1

    1 22

    θ

    θθ

    Kp111 +=

    θ

    p1K

    S 1=

    θ1

  • P/atm0.0 0.5 1.0 1.5 2.0

    Sur

    face

    cov

    erag

    e θ

    0.0

    0.2

    0.4

    0.6

    0.8

    1.0

    K = 10K = 1K = 0.1

    11

    1

    →≅+

    >>

    θKpKp

    Kphigh plimit :monolayerformed

    KpKp

    Kp

    ≅≅+

  • Kinetics of surface reactions.

    Assume that gaseous reactant decomposes when it is adsorbed.

    θkR =Surface coverage of adsorbed gasReaction

    rateSurface coveragerelated to gaspressure p viaLangmuir adsorptionisotherm

    KpKp+

    =1

    θ

    KpkKpR+

    =1

    We can consider two limits.Low pressures.High pressures.

    Rate dependslinearly on gasPressure pFirst order kinetics.Adsorption processis rate determiningwhen p is low. Decomposition is fast.

    1Kp

    kR ≅ Adsorption rate verylarge when p is high.Decomposition step rds.

  • A(g)

    Adsorption of a gas on a solid isan exothermic process : ∆ Hads isnegative.Both adsorption and desorptionprocesses follow the Arrheniusequation.

    −=

    −=

    RTEAk

    RTEAk

    DDD

    AAA

    exp

    exp

    adsorption pre-exponential factor

    activation energy foradsorption

    EA ED

    ∆Hads

    Aads

    activation energy fordesorption

    DAads

    ads

    D

    A

    D

    A

    EEHRTH

    AA

    kkK

    −=∆

    ∆−== exptemperature (K)

    desorption pre-exponential factor

    R = gas constant = 8.314 J mol-1 K-1

  • How is ∆Hads measured ?

    000 ln adsadsads STHKRTG ∆−∆=−=∆

    Gibbs energy of adsorption entalphy of adsorption2

    0

    00

    ln

    ln

    RTH

    TK

    RS

    RTHK

    ads

    adsads

    ∆=

    ∂∂

    ∆+

    ∆−=

    θ

    θθ

    θθ

    θθ

    θθ

    ∂∂

    −=

    ∂∂

    =

    ∂∂

    +

    ∂∂

    −=+

    −=

    TK

    Tp

    Tp

    TK

    pK

    Kp

    lnln

    0lnln1

    lnlnln

    1

    Langmuir adsorption assumed

    p0 1 2

    θ

    0.0

    0.5

    1.0

    −∆

    =

    ∆−=

    ∂∂

    21

    0

    2

    1

    2

    0

    11ln

    ln

    TTRH

    pp

    RTH

    Tp

    ads

    ads

    θ

    θ

    T2

    T1

    p1p2

    entropy of adsorption

    constant surface coverage

    constant surface coverage

    p1, p2, T1 and T2 canbe measured so∆Hads can be determined.

  • Chemical Kinetics.

    Lectures 5-6.Microscopic theory of chemical

    reaction kinetics.

  • Temperature effects in chemical kinetics.

    • Chemical reactions are activated processes : they require an energy input in order to occur.

    • Many chemical reactions are activated via thermal means.• The relationship between rate constant k and temperature T is

    given by the empirical Arrhenius equation.• The activation energy EA is determined from experiment, by

    measuring the rate constant k at a number of different temperatures. The Arrhenius equationis used to construct an Arrhenius plotof ln k versus 1/T. The activation energyis determined from the slope of this plot.

    −=

    RTEAk Aexp

    Pre-exponentialfactor

    ( )

    =

    −=

    dTkdRT

    TdkdREA

    ln/1

    ln 2kln

    T1

    RESlope A−=

  • Microscopic theories of chemical reaction kinetics.

    • A basic aim is to calculate the rate constant for a chemical reaction from first principles using fundamental physics.

    • Any microscopic level theory of chemical reaction kinetics must result in the derivation of an expression for the rate constant that is consistent with the empirical Arrhenius equation.

    • A microscopic model should furthermore provide a reasonable interpretation of the pre-exponential factor A and the activation energy EAin the Arrhenius equation.

    • We will examine two microscopic models for chemical reactions :– The collision theory.– The activated complex theory.

    • The main emphasis will be on gas phase bimolecular reactions since reactions in the gas phase are the most simple reaction types.

  • References for Microscopic Theory of Reaction Rates.

    • Collision Theory.– Atkins, de Paula, Physical Chemistry 7th

    edition, Chapter 27, Section. 27.1, pp.944-951.

    • Activated Complex Theory.– Atkins, de Paula, Physical Chemistry 7th

    edition, Chapter 27, Section.27.4-27.5, pp. 956-961.

  • Collision theory of bimolecular gas phase reactions.

    • We focus attention on gas phase reactions and assume that chemical reactivity is due to collisions between molecules.

    • The theoretical approach is based on the kinetic theory of gases.• Molecules are assumed to be hard structureless spheres. Hence themodel neglects the discrete chemical structure of an individualmolecule. This assumption is unrealistic.

    • We also assume that no interaction between molecules until contact.• Molecular spheres maintain size and shape on collision. Hence thecentres cannot come closer than a distance δ given by the sum ofthe molecular radii.

    • The reaction rate will depend on two factors :

    • the number of collisions per unit time (the collision frequency)• the fraction of collisions having an energy greater than a certain

    threshold energy E*.

  • Simple collision theory : quantitative aspects.

    Products)()( →+ kgBgA

    Hard sphere reactantsMolecular structure anddetails of internal motionsuch as vibrations and rotationsignored.

    Two basic requirements dictate a collision event.

    • One must have an A,B encounter over a sufficiently short distance to allowreaction to occur.

    • Colliding molecules must have sufficient energy of the correct type to overcome the energy barrier for reaction. A threshold energy E* is required.

    Two basic quantities are evaluated using the Kinetic Theory of gases : the collision frequency and the fraction of collisions that activate moleculesfor reaction.To evaluate the collision frequency we need a mathematical way to definewhether or not a collision occurs.

  • Ar

    Brδ

    Area = σ

    A

    B

    The collision cross section σdefines when a collision occurs.

    ( )22 BA rr +== ππδσ

    Effective collisiondiameter

    BA rr +=δ

    The collision cross section for two molecules can be regarded to be the area within which the center of theprojectile molecule A must enter around the target molecule Bin order for a collision to occur.

  • A

    BA rr +=δ

    B

    δ≤b

    δ>b

    δ>b

    δ≤b

    δ≤b

    Cross sectionalArea of disc

    2δπσ =

    Criterion forSuccessful collision

    Collisionpossible

    Collisionimpossible δ>b

  • Tkmv

    B2exp

    2

    v

    • The velocity distribution curvehas a very characteristic shape.

    • A small fraction of moleculesmove with very low speeds, asmall fraction move with very high speeds, and the vast majorityof molecules move at intermediatespeeds.

    • The bell shaped curve is called aGaussian curve and the molecularspeeds in an ideal gas sample areGaussian distributed.

    • The shape of the Gaussian distribution curve changes as the temperature is raised.

    • The maximum of the curve shifts tohigher speeds with increasing temperature, and the curve becomesbroader as the temperatureincreases.

    • A greater proportion of thegas molecules have high speeds at high temperature than at low temperature.

    Maxwell-Boltzmann velocity

    Distribution function

    =Tk

    mvvFB2

    4)(2/3

    2

    ππ

    )(vF

    Gas molecules exhibita spread or distributionof speeds.

  • The collision frequency is computed via the kineticTheory of gases.We define a collision number (units: m-3s-1) ZAB.

    Mean relative velocityUnits: m2s-1rBAAB

    vnnZ 2δπ=

    BA rr +=δnj = number density of molecule j (units : m-3)Mean relative velocity evaluated via kinetic theory.

    Average velocity of a gas moleculeMB distribution of velocitiesenables us to statistically estimate the spread ofmolecular velocities in a gas

    ( )

    =

    = ∫∞

    Tkmv

    TkmvvF

    dvvFvv

    BB 2exp

    24)(

    22/32

    0

    ππ

    Maxwell-Boltzmann velocityDistribution function

    Some maths !

    mTkv B

    π8

    = Mass ofmolecule

  • We now relate the average velocity to the meanrelative velocity.If A and B are different molecules then 22

    BAr vvv +=

    j

    Bj m

    Tkvπ8

    =

    µπTkv Br

    8=Hence the collision number

    between unlike moleculescan be evaluated.

    BA

    BA

    mmmm

    +=µReduced mass

    rBAAB vnnZ2δπ=

    For collisions between like molecules vvr 2=The number of collisions per unittime between a single A molecule and other Amolecules

    2/182

    =A

    BAA m

    TknZπ

    σBA

    BBAAB

    nZn

    TknnZ

    =

    =2/1

    8µπ

    σ

    Total number of collisionsbetween like molecules

    2/12 8

    22

    2

    ==A

    BA

    AAAA m

    TknnZZπ

    σWe divide by 2 to ensureThat each A,A encounterIs not counted twice.

    Collision frequencyfactor

  • *E

    Molecular collision iseffective only iftranslational energyof reactants is greater than somethreshold value.

    Fraction of moleculeswith kinetic energy greater Than some minimum Thresholdvalue ε*

    ( )

    −=>

    TkF

    B

    *exp* εεε

  • • The simple collision theory expression for the reaction rate R between unlikemolecules

    −=−=

    TknZn

    dtdnR

    BBA

    A *exp ε2/1

    8

    =µπ

    σ TkZ B

    • The more usual rate expression for abimolecular reaction between A and B is kabdt

    daR =−=

    • We introduce molar variables

    dtdaN

    dtdn

    Nnb

    Nna

    NE

    AA

    A

    B

    A

    A

    A

    =

    ==

    = ** ε • Hence the SCT rate expression becomes

    −=−=

    RTEabZN

    dtdaR A

    *expAvogadro constant

    • The bimolecular rate constant forcollisions between unlike molecules is given by

    −=

    =

    RTEz

    RTETkNk

    AB

    BA

    *exp

    *exp82/1

    µπσ

    −=

    =

    RTEz

    RTE

    mTkNk

    AA

    BA

    *exp

    *exp22/1

    πσ Collision

    Frequencyfactor

    • Similarly for bimolecular collisionsbetween like molecules

    Both of theseexpressions aresimilar to the Arrhenius equation.

  • We compare the results of SCT with the empirical Arrhenius eqn.In order to obtain an interpretation of the activation energy andPre-exponential factor.

    A,B encounters

    −=

    RTEAk Aobs exp

    −=

    =

    RTEz

    RTETkNk

    AB

    BA

    *exp

    *exp82/1

    µπσ

    −=

    =

    RTEz

    RTE

    mTkNk

    AA

    BA

    *exp

    *exp22/1

    πσ

    A,A encounters

    mkNA

    ATAzA

    BA

    AAobs

    πσ 82''

    ''

    =

    ==

    • SCT predictsthat the pre-exponentialfactor should depend on temperature.

    µπσ BA

    ABobs

    kNA

    ATAzA

    8'

    '

    =

    ==Pre-exponentialfactor

    SCT• The threshold energy and theactivation energy can also becompared. 2

    2*lnRT

    RTEdT

    kd +=

    2

    lnRTE

    dTkd A=

    Arrhenius• Activation energy exhibitsa weak T dependence. 2

    * RTEEA += *EEA ≅

  • SCT : a summary.• The major problem with SCT is that the threshold energy E* is very

    difficult to evaluate from first principles.• The predictions of the collision theory can be critically evaluated by

    comparing the experimental pre-exponential factor with that computed using SCT.

    • We define the steric factor P as the ratio betweenthe experimental and calculated A factors.

    • We can incorporate P into the SCTexpression for the rate constant.

    • For many gas phase reactionsP is considerably less than unity.

    • Typically SCT will predict that Acalc will be in the region 1010-1011 Lmol-1s-1 regardless of the chemical nature of the reactants and products.

    • What has gone wrong? The SCT assumption of hard sphere collisionneglects the important fact that molecules possess an internal structure.It also neglects the fact that the relative orientation of the colliding molecules will be important in determining whether a collision will lead to reaction.

    • We need a better theory that takes molecular structure into account. The activated complex theory does just that .

    calcAAP exp=

    −=

    −=

    RTEPzk

    RTEPzk

    AA

    AB

    *exp

    *exp

  • −=

    −=

    RTEPzk

    RTEPzk

    AA

    AB

    *exp

    *exp

    −=

    =

    RTEz

    RTETkNk

    AB

    BA

    *exp

    *exp82/1

    µπσ

    −=

    =

    RTEz

    RTE

    mTkN

    AA

    BA

    *exp

    *exp22/1

    πσ

    Steric factor(Orientation requirement)

    Weaknesses:• No way to compute P from molecularparameters

    • No way to compute E* from first principles.Theory not quantitative or predictive.Strengths:•Qualitatively consistent with observation (Arrhenius equation).• Provides plausible connection between microscopic molecular properties andmacroscopic reaction rates.

    • Provides useful guide to upper limits for rateconstant k.

    TransportpropertySummary of SCT. Energy criterion

    A,B encounters

    A,A encounters

    k

  • [ ] CABABCBCA +→→+ *

  • AEsAE

    r

    0U∆

  • Activated complexTransition state

    ∆G*Progress of a chemical reaction can beexpressed in terms of a plot of energyversus reaction co-ordinate.The reaction coordinate may be describedin terms of changes in particular bond lengthssince these will vary as the reaction progresses.

    ener

    gy

    productsreactants

    Reaction coordinate

    Activated Complexor Transition State

  • The transition state or activated complex is a high energyspecies of fleeting (ca fs lifetime, 1fs = 10-15s) existence. Its structurehas features both of the reactants and the products.1999 Nobel Prize in Chemistry awarded to Ahmed Zewailfrom Caltech for his studies of transition states of chemicalreactions by femtosecond spectroscopy using laser technology.Experimental study of very short timescales is calledfemtochemistry.

    Transition states can have different geometries.

  • Basic assumption : activated complexX* is treated as a thermodynamic

    quantity in thermodynamic equilibrium with the reactants.A (g) + B(g) X* Products

    Kc*

    ν*

    Bimolecular reaction frequency of decompositionof activated complex

    Reaction molecularity m : number ofmolecules which come together to formthe activated complex.m = 1 : unimolecular reactionm = 2 : bimolecular reaction .

    Equilibrium constant forreactant/transition statetransformation.

    ∗∗= xR νabxKc

    ∗∗ =

    abKx c∗∗ =

    abKR c∗∗=ν kabR =

    ∗∗= cKk ν

    Reaction rate R depends on the frequency ofdecomposition and concentration of activatedcomplexes. bimolecular reaction

    rateconstant

    This fundamental expression must now beevaluated.

  • *0 )( nC cKK∆∗∗ =

    1 molL-1

    For an ideal gas or for reactions in solution :

    thermodynamicequilibrium constant

    121 −=−=∆ ∗nChange in # molesfor reactant /TStransformation

    0cKKC

    ∗∗ =

    ==

    ∗∗∗∗

    0cKKk C νν

    hTkB=∗ν

    h = Planck’s constant = 6.63x10-34JskB = Boltzmann constant = 1.38x10-23 JK-1

    For T = 298 K

    112106 −∗ ×≅ sνThis is of the correctorder of magnitude fora molecular vibrationfrequency.

    Not all transition states go and formproducts.

    ∗∗∗∗

    =

    ==

    Khc

    Tk

    cKKk

    B

    C

    0

    0

    κ

    νκνκ

    κ = transmission coefficient0 < κ < 1

    We assume that the TSdecomposes with a frequency given by:

    k has units Lmol-1s-1

  • We relate K* to the Gibbs energy of activation ∆G* ∗∗ −=∆ KRTG ln0

    ∆−=

    ∗∗

    RTGK

    0

    exp

    ∆−

    =

    RTG

    hcTkk B

    0

    0 expκ

    Eyring equation : fundamental ACT result. ∗∗∗ ∆−∆=∆ 000 STHG

    ∆−

    =

    ∗∗

    RTH

    RS

    hcTkk B

    00

    0 expexpκ enthalpy ofactivation

    entropy ofactivation

    −=

    RTEAk Aexp We obtain a usefulinterpretation for

    activation energy andpre-exponential factor.

  • =

    dTkdRTEA

    ln2

    ∆−

    =

    ∗∗

    RTH

    RS

    hcTkk B

    00

    0 expexpκ

    internal energy of activation pre-exponential factor A

    ∆+

    =

    RTE

    RS

    hcTkk AB exp2exp

    0

    0κ∗∗∗∗

    ∆+∆=∆

    +∆=000

    0

    VPUH

    RTUEA

    volume of activation bimolecular gasphase reactioncondensed phases m = 2 bimolecular reaction

    ( ) RTRTmRTnVPV

    −=−=∆=∆

    ≅∆∗∗

    10

    0

    0

    ideal gases reaction molecularity

    mRTEH A −=∆∗0

    m = 1, condensed phases, unimoleculargas phase reactionsm = 2, bimolecular gas phase reactions

  • ( )

    ∆+

    =

    − RTE

    RSm

    chTkk Am

    Bm expexp

    0

    10κ m = molecularity

    ( )

    ∆+

    =

    − RSm

    chTkA m

    B0

    10expκ

    pre-exponential factor related to entropyof activation (difference in entropy betweenreactants and activated complex

    ∆S0* explained interms of changes in translational, rotational and vibrationaldegrees of freedom on going fromreactants to TS.

    Aln

    RES A−=

    kln

    T1

    ( )

    ∆+

    ==

    − RSm

    chTkPZA m

    B0

    10expκ

    collision theory positive1Pnegative1

    01

    0

    0

    0

    ∆>

    ∆<

    ≅∆≅

    SSPSP

    TS less ordered thanreactants

    TS more orderedthan reactants

    steric factor

    SF Chemical Kinetics 2002/2003.Course Summary.Recommended reading.SF Chemical Kinetics.Chemical rate processes.Chemical reaction kinetics.Basic ideas in reaction kinetics.Reaction Rate.SF Chemical Kinetics.SF Chemical Kinetics.Mechanism of enzyme action.Classification of enzymes.SF Chemical Kinetics.Temperature effects in chemical kinetics.Microscopic theories of chemical reaction kinetics.References for Microscopic Theory of Reaction Rates.Collision theory of bimolecular gas phase reactions.SCT : a summary.