Transcript of JISC MIRAGE 2011: Repository Enrichment from Archiving to Creation Dr. Xiaohhong (Sharon) Gao...
- Slide 1
- JISC MIRAGE 2011: Repository Enrichment from Archiving to
Creation Dr. Xiaohhong (Sharon) Gao Middlesex University London NW4
4BT x.gao@mdx.ac.uk Repository @
http://image.mdx.ac.uk/vin/demo.php.http://image.mdx.ac.uk/vin/demo.php
- Slide 2
- JISC Contents Background Project aims & objectives Project
plan Summary
- Slide 3
- JISC Background (1) Built on MIRAGE Middlesex medical Image
Repository with a CBIR ArchivinG Environment. Strand : Start-up
Repository Between April 2009- Sept. 2010. Accommodating: 100,000
2D images and 100 3D images
- Slide 4
- JISC Background (2) MIRAGE Phase1 Web page
- Slide 5
- JISC Background (3) Repository -- connection
- Slide 6
- JISC Background (3) Repository-- interface
- Slide 7
- JISC Background (3) Query Query
- Slide 8
- JISC Background (3) Retrieved results
- Slide 9
- JISC Background (3) Limitations (1) 1. Viewing of 3D images in
2D way brain images Computed Tomography Magnetic Resonance Positron
Emission tomography (CT)(MR)(PET)
- Slide 10
- JISC Background (3) Limitations (1) 1. At Repository interface
Montage
- Slide 11
- JISC Background (3) Limitations (2) 2. Uploading image
- Slide 12
- JISC MRIAGE 2011 Aims MRIAGE Phase 1 from Creation to Archiving
(Done ) MIRAGE 2011 from Archiving to Creation Aim To enrich the
current repository MIRAGE with two necessities to meet users needs,
leading to a sustainable, usable and flexible model of data
management.
- Slide 13
- JISC MIRAGE 2011 Objectives Objectives A review report on the
feasibility of enrichment of MIRAGE. Embedding Visualization
Toolkit Development of a plug-in for uploading queries Evaluation
report Six-monthly interim reports
- Slide 14
- JISC MIRAGE 2011 Objective - 1 Embedding Visualization Toolkit
At server side, visual content extraction will be performed and
will be included into the existing feature database. At client
side, 3D viewer built on VTK is expected to be incorporated to
display 3D (or higher) images.
- Slide 15
- JISC MIRAGE 2011 Objective -1 Embedding Visualization Toolkit
An Example
- Slide 16
- JISC MIRAGE 2011 Objective -2 Development of a plug-in for
uploading queries Will integrate various types of textual metadata
and ontology in addition to image data. C:\\myfile\brain.jpg Brain
tumour Upload images Text search
- Slide 17
- JISC MIRAGE 2011 Project Plan WP1: Literature review (2
months). WP2: 3D Viewer embedding from server side (1 month). WP3:
3D Viewer embedding from client side (2 months). WP4: Enabling
uploading facility (2 months) WP5: System evaluation (1 month).
WP6: Dissemination. WP7: Management
- Slide 18
- JISC MIRAGE 2011 Project Plan WP1 WP1: Literature review (2
months). The state of the art web technologies (e.g., RDF metadata,
SPARQl-to-SQL translation, OWL, DL, XML, Java3D). Standards and
applications in relation to management of images with a focus on
higher dimensional (>2D). Interfacing with one of the existing
open source software for visualization and analysis tools, such as
ImageJ, 3D Slicer, MIPAV, ParaView and Amira is anticipated.
- Slide 19
- JISC MIRAGE 2011 Project Plan WP2 WP2: 3D Viewer embedding from
server side (1 month). Visualization Tool Kit (VTK) will be
embedded into GIFT server side On the other hand, GIFT provides a
PluginMaker directory including Accessor plug-in and Query
processor plug-in that can be filled with in-house code to create
an extended/modified query engine, which boils down to writing
classes in C++ language.
- Slide 20
- JISC MIRAGE 2011 Project Plan WP3 WP3: 3D Viewer embedding from
client side (2 months). By providing JavaScript objects to
communicate with remote web interfaces, allowing users to perform
complex remote visualization processing in the server side while
viewing the results locally. Coding PHP client within GIFT
framework.
- Slide 21
- JISC MIRAGE 2011 Project Plan WP3 by Amira
- Slide 22
- JISC MIRAGE 2011 Project Plan WP4 WP4: Enabling uploading
facility (2 months) Using the client-server communication protocol
MRML. Drawn from XML, MRML protocol with a formal editable
specification DTD (document type definition) can be adopted by GIFT
with a certain degree of extension.
- Slide 23
- JISC MIRAGE 2011 Project Plan WP5 WP4: System evaluation (1
month). The statistic methods structured surveys workshops
presentations.
- Slide 24
- JISC MIRAGE 2011 Project Plan WP6 & WP7 WP6: Dissemination.
Web site Publications Presentation. WP7: Management Will be the
responsibility of EIS.
- Slide 25
- JISC Summary The role a successful repository plays serves two
ways, which is from creation to archive and back. It is anticipated
that MIRAGE 2011 will enrich the repository to live up to its full
potentials. Repository @ http://image.mdx.ac.uk/vin/demo.php.
http://image.mdx.ac.uk/vin/demo.php
- Slide 26
- JISC Thanks ! Questions ?