Post on 11-Mar-2021
157
As of January 18, 2005
Carl Anderson Brookhaven National Laboratory cwa@bnl.gov
Gordon Anderson Pacific Northwest National Laboratory gordon@pnnl.gov
Adam Arkin Lawrence Berkeley National Laboratory aparkin@lbl.gov
Holly Baden-Tillson J. Craig Venter Institute HBaden-Tillson@venterinstitute.org
Ray Bair Argonne National Laboratory bair@mcs.anl.gov
Kristin Balder-Froid Lawrence Berkeley National Laboratory KHBalder-Froid@lbl.gov
Duhee Bang University of Chicago duhee@uchicago.edu
Gang Bao Georgia Institute of Technology / Emory University gang.bao@bme.gatech.edu
Christian Barnes J. Craig Venter Institute cbarnes@venterinstitute.org
Paul Bayer U.S. Department of Energy paul.bayer@science.doe.gov
Jane BearingerLawrence Livermore National Laboratorybearinger1@llnl.gov
Appendix 1: Attendees
David Beck University of Washington dacb@u.washington.edu
Alexander Beliaev Pacific Northwest National Laboratory alex.beliaev@pnl.gov
Andrea BelgranoNational Center for Genome Resourcesab@ncgr.org
Harvey Bolton Pacific Northwest National Laboratory harvey.bolton@pnl.gov
Jennifer Bownas Oak Ridge National Laboratory bownasjl@ornl.gov
Timothy Boyle Sandia National Laboratories tjboyle@Sandia.gov
Andrew Bradbury Los Alamos National Laboratory amb@lanl.gov
James Brainard Los Alamos National Laboratory jbrainard@lanl.gov
Joseph BreenNational Institutes of Healthjbreen@niaid.nih.gov
David Bruce DOE Joint Genome Institute / Los Alamos National Laboratory dbruce@lanl.gov
James Bruce Washington State University james_bruce@wsu.edu
Attendees
158
Erick Butzlaff University of Wisconsin admiralexe@yahoo.com
Denise Casey Oak Ridge National Laboratory caseydk@ornl.gov
Parag Chitnis National Science Foundation pchitnis@nsf.gov
Paul Choi Harvard University pjchoi@fas.harvard.edu
Ray-Yuan Chuang J. Craig Venter Institute rchuang@venterinstitute.org
Bruce Church Gene Network Sciences kelly@gnsbiotech.com
George ChurchHarvard University / Massachusetts Institute of Technologyg1m1c1@arep.med.harvard.edu
Dean ColeU.S. Department of Energydean.cole@science.doe.gov
Frank CollartArgonne National Laboratoryfcollart@anl.gov
Michael ColvinUniversity of California, Mercedmcolvin@ucmerced.edu
Sean ConlanWadsworth Institutesconlan@wadsworth.org
Maddalena CoppiUniversity of Massachusetts, Amherstmcoppi@microbio.umass.edu
Robert CoyneNational Science Foundationrcoyne@nsf.gov
Paul CrozierSandia National Laboratoriespscrozi@sandia.gov
Barbara CullitonGenome News Networkbjculliton@erols.com
Patrik D’haeseleerLawrence Livermore National Laboratorydhaeseleer2@llnl.gov
Sacha De CarloUniversity of California, Berkeleysachadecarlo@yahoo.com
Anjali DhimanGene Network Scienceskelly@gnsbiotech.com
Timothy DonohueUniversity of Wisconsin, Madisontdonohue@bact.wisc.edu
Norman DovichiUniversity of Washingtondovichi@chem.washington.edu
Kenneth DowningLawrence Berkeley National Laboratorykhdowning@lbl.gov
Daniel DrellU.S. Department of Energydaniel.drell@science.doe.gov
Leland EllisDepartment of Homeland Securityleland.ellis@dhs.gov
Larry FelserGene Network Scienceskelly@gnsbiotech.com
Attendees
159
Matthew FieldsMiami Universityfieldsmw@muohio.edu
Peg FoltaLawrence Livermore National Laboratoryfolta2@llnl.gov
Marvin FrazierJ. Craig Venter Institutemfrazier@venterinstitute.org
James K. FredricksonPacific Northwest National Laboratorytara.hoyem@pnl.gov
Haichun GaoOak Ridge National Laboratoryhai@ornl.gov
Timothy GardnerBoston Universitytgardner@bu.edu
George GarrityMichigan State Universitygarrity@msu.edu
Sara GaucherSandia National Laboratoriesspgauch@sandia.gov
Al GeistOak Ridge National Laboratorygst@ornl.gov
Damian GesslerNational Center for Genome Resourcesddg@ncgr.org
Daniel GibsonJ. Craig Venter Institutedgibson@venterinstitute.org
Carol GiomettiArgonne National Laboratorycsgiometti@anl.gov
Maria GiovanniNational Institutes of Healthmgiovanni@niaid.nih.gov
Stephen GiovannoniOregon State Universitysteve.giovannoni@oregonstate.edu
John GlassJ. Craig Venter Institutejohn.glass@venterinstitute.org
Peter GoodNational Institutes of Healthgoodp@mail.nih.gov
Yuri GorbyPacific Northwest National Laboratoryyuri.gorby@pnl.gov
Andrey GorinOak Ridge National Laboratoryagor@ornl.gov
Patrick GrantLawrence Livermore National Laboratorypggrant@llnl.gov
Chris GunterNaturec.gunter@naturedc.com
David HaalandSandia National Laboratoriesdmhaala@sandia.gov
Masood HadiSandia National Laboratoriesmzhadi@sandia.gov
Qiang HeOak Ridge National Laboratoryheq1@ornl.gov
Grant HeffelfingerSandia National Laboratoriesgsheffe@sandia.gov
Attendees
160
Robert HettichOak Ridge National Laboratoryhettichrl@ornl.gov
Peter HighnamNational Institutes of HealthHighnam@NIH.gov
Roland HirschU.S. Department of Energyroland.hirsch@science.doe.gov
Dawn HolmesUniversity of Massachusetts, Amherstdholmes@microbio.umass.edu
Norman HommesOregon State Universityhommesn@onid.orst.edu
Brian HookerPacific Northwest National Laboratorybrian.hooker@pnl.gov
John HoughtonU.S. Department of Energyjohn.houghton@science.doe.gov
Greg HurstOak Ridge National Laboratoryhurstgb@ornl.gov
Thomas HuserLawrence Livermore National Laboratoryhuser1@llnl.gov
Clyde HutchisonJ. Craig Venter InstituteCHutchison@venterinsitutue.org
Prabha IyerJ. Craig Venter Institutepiyer@venterinstitute.com
Eric JakobssonUniversity of Illinois, Urbana-Champaignjake@ncsa.uiuc.edu
Barbara JasnyScience/AAASbjasny@aaas.org
Grant JensenCalifornia Institute of Technologyjensen@caltech.edu
Matthew KaneNational Science Foundationmkane@nsf.gov
Samuel KaplanUniversity of Texas Medical School, HoustonSamuel.Kaplan@uth.tmc.edu
Arthur KatzU.S. Department of Energyarthur.katz@science.doe.gov
Brian KayArgonne National Laboratorybkay@anl.gov
Jay KeaslingUniversity of California, Berkeleykeasling@berkeley.edu
Martin KellerDiversa Corporationmkeller@diversa.com
Stephen KennelOak Ridge National Laboratorykennelsj@ornl.gov
Vladimir KeryPacific Northwest National Laboratoryvladimir.kery@pnl.gov
Arnold KimUniversity of California, Mercedadkim@ucmerced.edu
William KimmerlyPacific Northwest National Laboratorywilliam.kimmerly@pnl.gov
Attendees
161
David KleinGener8, Inc.dklein@gener8.net
Michael KnotekConsultant to DOEm.knotek@verizon.net
Eugene KolkerBIATECHekolker@biatech.org
David KoppenaalPacific Northwest National Laboratorydavid.koppenaal@pnl.gov
Henrietta KulagaIPTOhkulaga@snap.org
Stephen LaneLawrence Livermore National Laboratorylane12@llnl.gov
Jennie LarkinNational Institutes of Healthlarkinj2@nhlbi.nih.gov
Carole LartigueJ. Craig Venter Instituteclartigue@venterinstitute.org
Charles LawrenceBrown UniversityCharles_Lawrence@Brown.edu
Philip LeDucCarnegie Mellon Universityprleduc@cmu.edu
Adam LeeUniversity of Marylandadamlee@umd.edu
Kyriacos LeptosHarvard Medical Schoolleptos@fas.harvard.edu
Huilin LiBrookhaven National Laboratoryhli@bnl.gov
Xiaoxia LinHarvard Medical Schoolxiaoxia@genetics.med.harvard.edu
Derek LovleyUniversity of Massachusettsdlovley@microbio.umass.edu
William MacConnellMacConnell Research Corporationbmacconnell@macconnell.com
Lee MakowskiArgonne National Laboratorylmakowski@anl.gov
Alexander MalkinLawrence Livermore National Laboratorymalkin1@llnl.gov
Reinhold MannOak Ridge National Laboratorymannrc@ornl.gov
Betty MansfieldOak Ridge National Laboratorymansfieldbk@ornl.gov
Roummel MarciaUniversity of Wisconsin, Madisonrmarcia@biochem.wisc.edu
Anthony MartinoSandia National Laboratoriesmartino@sandia.gov
Adam MartinyMassachusetts Institute of Technologymartiny@mit.edu
Mahir MarufJ. Craig Venter Institutemahir.maruf@venterinstitute.org
Attendees
162
M. Uljana Mayer-CumblidgePacific Northwest National Laboratoryuljana.mayer-cumblidge@pnl.gov
Harley McAdamsStanford Universityhmcadams@stanford.edu
Lee Ann McCueWadsworth Centermccue@wadsworth.org
Gail McLeanU.S. Department of Agriculturegmclean@csrees.usda.gov
Barbara MetheThe Institute for Genomic Researchbmethe@tigr.org
Lisa MillerBrookhaven National Laboratorylmiller@bnl.gov
Marissa MillsOak Ridge National Laboratorymillsmd@ornl.gov
Julie MitchellUniversity of Wisconsin, Madisonmitchell@math.wisc.edu
Jennifer Morrell-FalveyOak Ridge National Laboratorymorrelljl1@ornl.gov
Sue MorssArgonne National Laboratorysmorss@anl.gov
Vasantha NagarajanDuPontvasantha.nagarajan@usa.dupont.com
Dave NelsonLawrence Livermore National Laboratorynelson6@llnl.gov
Lee NewbergWadsworth Centerlee.newberg@wadsworth.org
Charles NgoweMichigan State Universityngowe@chemistry.msu.edu
Kim NylanderOak Ridge National Laboratorynylanderk@ornl.gov
Yasuhiro OdaUniversity of Iowayasuhiro-oda@uiowa.edu
Susan OldNational Institutes of Healtholds@nhlbi.nih.gov
Paola OliveriCaltechpoliveri@caltech.edu
Paula OlsiewskiAlfred P. Sloan Foundationolsiewski@sloan.org
Regina O’NeilUniversity of Massachusetts, Amherstrtarallo@microbio.umass.edu
Mary Oster-GraniteNational Institutes of Healthmo96o@nih.gov
Brian PalenikUniversity of California, San Diegobpalenik@ucsd.edu
Aristides PatrinosU.S. Department of Energyari.patrinos@science.doe.gov
Dale PelletierOak Ridge National Laboratorypelletierda@ornl.gov
Attendees
163
Cynthia PfannkochJ. Craig Venter Institutecpfannkoch@venterscience.org
Anne PlantNSTC/OSTPaplant@ostp.eop.gov
Steve PlimptonSandia National Laboratoriessjplimp@sandia.gov
Gemma RegueraUniversity of Massachusetts, Amherstgemma_reguera@microbio.umass.edu
Mark RintoulSandia National Laboratoriesrintoul@sandia.gov
Margie RominePacific Northwest National Laboratorymargie.romine@pnl.gov
Denise RussoNational Institutes of Healthdrusso@mail.nih.gov
Herbert SauroKeck Graduate Insitutehsauro@kgi.edu
Luis Sayavedra-SotoOregon State Universitysayavedl@science.oregonstate.edu
David SchwartzUniversity of Wisconsin, Madisondcschwartz@facstaff.wisc.edu
Salvatore SechiNational Institutes of HealthSalvatore_Sechi@nih.gov
Michael SeibertNational Renewable Energy Laboratorymike_seibert@nrel.gov
Margrethe SerresMarine Biological Laboratorymserres@mbl.edu
Liang ShiPacific Northwestern National LaboratoryLiang.Shi@pnl.gov
Michael SinclairSandia National Laboratoriesmbsincl@sandia.gov
Dinah SingerNational Cancer Instituteds13j@nih.gov
Richard SmithPacific Northwest National Laboratoryrds@pnl.gov
Hamilton SmithJ. Craig Venter Institutehsmith@venterinstitute.org
Harold SmithUniversity of Marylandsmithh@umbi.umd.edu
Thomas SquierPacific Northwest National Laboratorythomas.squier@pnl.gov
Ranjan SrivastavaUniversity of Connecticutsrivasta@engr.uconn.edu
David A. StahlUniversity of Washingtondastahl@u.washington.edu
Marvin StodolskyU.S. Department of EnergyMarvin.Stodolsky@science.doe.gov
F. William StudierBrookhaven National Laboratorystudier@bnl.gov
Attendees
164
John SutherlandBrookhaven National Laboratoryjcs@bnl.gov
F. Robert TabitaOhio State Universitytabita.1@osu.edu
Chad TalleyLawrence Livermore National Laboratorytalley1@llnl.gov
Theodore TarasowLawrence Livermore National Laboratorytarasow2@llnl.gov
Michael TeresinskiU.S. Department of Energymichael.teresinski@science.doe.gov
Michael ThelenLawrence Livermore National Laboratorymthelen@llnl.gov
David ThomassenU.S. Department of Energydavid.thomassen@science.doe.gov
Janelle ThompsonMassachusetts Institute of Technologyjanelle@mit.edu
Joyce ThorpeJ. Craig Venter Institutejthorpe@venterinstitute.org
James TiedjeMichigan State Universitytiedjej@msu.edu
Jerilyn TimlinSandia National Laboratoriesjatimli@sandia.gov
Jeffrey TokLawrence Livermore National Laboratorytok2@llnl.gov
Emily TurnerUniversity of Washingtonemilyt@u.washington.edu
Ravishankar VallabhajosyulaKeck Graduate Instituterrao@kgi.edu
Sanjay VasheeJ. Craig Venter Institutesvashee@venterinstitute.org
Wim VermaasArizona State Universitywim@asu.edu
Judy WallUniversity of Missouri, Columbiawallj@missouri.edu
Sharlene WeatherwaxU.S. Department of Energysharlene.weatherwax@science.doe.gov
Peter WeberLawrence Livermore National Laboratoryweber21@llnl.gov, mcgurn1@llnl.gov
Xueming WeiOregon State Universityweixue@science.oregonstate.edu
Raymond WildungU.S. Department of Energyraymond.wildung@science.doe.gov
H Steven WileyPacific Northwest National Laboratorysteven.wiley@pnl.gov
David WilsonCornell Universitydbw3@cornell.edu
X. Sunney XieHarvard Universityxie@chemistry.harvard.edu
Attendees
165
Ying XuUniversity of Georgiaxyn@bmb.uga.edu
Qing XuJ. Craig Venter Instituteqxu@tcag.org
Luying XunHarvard Universityxun@mail.wsu.edu
Haw YangUniversity of California, Berkeleyhawyang@berkeley.edu
Jane YeNational Institutes of Healthyej@nhlbi.nih.gov
Shibu YoosephJ. Craig Venter Institutesyooseph@venterinstitute.org
Karsten ZenglerDiversa Corporationkzengler@diversa.com
Jizhong ZhouOak Ridge National Laboratoryzhouj@ornl.gov
Julie ZimmermanLouisiana State Universityjzimme5@lsu.edu
Jeremy ZuckerHarvard Medical Schoolzucker@research.dfci.harvard.edu
Attendees
166
167
Appendix 2: Web Sites
Program Web SitesGenomics:GTL Web site: http://doegenomestolife.org/
This book: http://doegenomestolife.org/pubs/2005abstracts/
DOE Microbial Genome Program: http://microbialgenome.org/
Web Sites Listed in AbstractsBioWarehouse System: http://bioinformatics.ai.sri.com/biowarehouse/
Carbon Sequestration in Synechococcus sp.: From Molecular Machines to Hierarchical: Modeling http://www.genomes2life.org/
Center for Molecular and Cellular Systems: http://www.ornl.gov/GenomestoLife/
GelBank: http://gelbank.anl.gov/
Joint Genome Institute: http://www.jgi.doe.gov/
LAMMPS Molecular Dynamics Simulator: http://www.cs.sandia.gov/~sjplimp/lammps.html
Microbial Ecology, Proteogenomics & Computational Optima. DOE Genomes to Life Center at Harvard/MIT/BWH/MGH: http://arep.med.harvard.edu/DOEGTL/
ProteomeWeb: http://proteomeweb.anl.gov/
Synechococcus sp. WH8102 Knowledgebase: http://csbl.bmb.uga.edu/WH8102/
Synechocystis sp. PCC 6803: http://lsweb.la.asu.edu/synechocystis/
The SEED: An Annotation/Analysis Tool: http://theseed.uchicago.edu/FIG/index.cgi
Virtual Institute of Microbial Stress and Survival (VIMSS): http://vimss.org
•
•
•
•
•
•
•
•
•
•
•
•
•
•
•
Web Sites
168
169Indexed by page number.
Author Index
AAbulencia, Carl 8, 11, 88Acinas, Silvia G. 89Ackerman, Eric J. 132Adamson, Anne E. 65Adhikari, Devi 115Adkins, Joshua N. 16, 19, 143Ahrendt, Angela 58Albrecht, Huguette 124Allen, Eric 87Alm, Eric 6, 8Alonso, Darwin O. V. 152Alperovich, Nina 60Alton, Anita J. 65Andersen, Gary L. 8, 11, 107Anderson, Gordon A. 51, 114, 115, 143, 144, 148Anderson, Kenneth K. 18Andrews, Shirley H. 65Andronaco, Gregory 130Aravind, L. 83Arkin, Adam 6, 8Arnold, Nikita D. 22Arp, Daniel 93Assad-Garcia, Nacyra 60Atlas, Jordan C. 68Auberry, Deanna L. 16, 18, 19Auberry, Kenneth J. 19, 51
BBabnigg, Gyorgy 51, 58Baden-Tillson, Holly A. 61Bai, Yun 72Baker, Brett J. 87Bakkal, Suphan 44Balhorn, Rod 121, 142Banfield, Jill 87Bang, Duhee 134Bao, Gang 117Barnes, Christian 62Barns, Susan 88Barofsky, Douglas F. 95Battista, J. R. 96Bearinger, Jane 122Beatty, J. Thomas 105Beck, David A. C. 152Becker, Gerald W. 141Belgrano, Andrea 34Beliaev, Alex S. 51, 52, 148
Bench, Graham 122, 146Bender, Kelly 8Benoit, Jennifer 89Bertozzi, Carolyn 147Bibbs, Lisa 95Blake, Robert C., II 87Borglin, Sharon 8, 11Bowers, Peter 150Bownas, Jennifer L. 65Boyer, Stephen 130Bradbury, Andrew 133Brahamsha, Bianca 24Brandes, Aaron 3Brockman, Fred 88Broderick, Joan 99Broderick, William 99Brodie, Eoin L. 8, 11, 107Brown, Steven 14Brown, W. Michael 32Bruce, David 109Bruce, James E. 114, 115Buchanan, Michelle 15Burisch, Christian 38Butler, Jessica 46Butzlaff, Erick A. 74
CCai, Long 128Cai, Zhi 100Callister, Stephen 144Cannon, Bill 15Cantor, C.B. 56Cao, Haishi 135Carmack, C. Steven 72Casey, Denise K. 65Castellanos, Mariajose 68Cate, Jamie H. D. 119Chain, Patrick 109Chan, James W. 121Chan, Priscilla 142Chandramohan, Praveen 21Chang, Sherman 88Chaudhuri, Swades K. 46Chen, Baowei 135Chen, Shaolin 102Chen, X. 34Chhabra, Swapnil 8, 14Chin, Kuk-Jeong 44Chisholm, Sallie W. 4, 5, 90, 103
Index
170Indexed by page number.
Cho, Jang-Cheon 95Choi, Paul 128Chowdhury, Saiful 115Christian, Allen T. 121, 122Chuang, Ray-Yuan 62Church, Bruce 68Church, George M. 3, 4, 5Cole, James R. 72Coleman, Maureen 103Collart, Frank R. 16, 50, 51, 139, 140, 141Collins, James J. 50, 56Colvin, Michael 75, 124Comolli, Luis 126Conlan, Sean 70Coppi, Maddalena 44Corzett, Michele H. 121Cottarel, G. 56Cottrell, Matthew T. 112Crawford, Jackie 122Crozier, Paul S. 38
DDaggett, Valerie 152Daly, Don S. 18Daly, Michael J. 57Dam, P. 30, 34Dasika, Madhukar 84Davidson, Eric H. 91Davidson, George S. 28Davis, John 99Day, Robert M. 22Day, Ryan 152DeNardo, Sally 124Desiderio, Russell 95DeWitt, David 99Dhiman, Anjali 68DiDonato, Laurie 44DiDonato, Raymond 46Ding, Yanhuai R. 148Distel, Daniel L. 89Doktycz, Mitchel 15Dominguez, Miguel 144Donohue, Timothy J. 110, 144Downing, Kenneth H. 126Driscoll, M. E. 56Dubchak, Inna 6, 8Dugan, Lawrence 122
EEdlefsen, Paul 51Eisenberg, David 150Elias, Dwayne A. 51, 148Emo, Brett 14
Ensman, L. 76Entcheva-Dimitrov, Plamena 112Esposito, Anthony 121Estes, Sherry A. 65Esteve-Núñez, Abraham 44, 46
FFaith, J. 56Fan, J. 76Fang, Ruihua 143, 144, 148Faull, Kym 100Faulon, Jean-Loup 32Fey, Sarah 139, 140, 141Fields, Matthew 8, 11, 14Foote, Bob 15Foote, Linda J. 16Fredrickson, James K. 50, 51, 52, 58, 143, 144, 148Friddle, Raymond W. 124Fridman, Tema 22Friedman, Nir 128
GGalperin, Michael Y. 51Gao, Weimin 14Gardner, Timothy S. 50, 56Garrity, George M. 72Gassman, Natalie R. 55Gaucher, Sara P. 8, 14, 17Geist, Al 21, 37Gelfand, Mikhail 6Geller, Jil 8, 11Gerdes, Sveta 100Gessler, Damian 34Ghirardi, Maria L. 97Gibson, Janet L. 105Gilna, Paul 109Giometti, Carol S. 50, 51, 58Giovannoni, Stephen J. 95Givan, Scott 95Glass, John I. 60Glaven, Richard 44, 46Goddard, Carrie D. 144Gonzales, Arlene 31, 40Gorby, Yuri A. 51, 52, 135, 148Gorin, Andrey 22Grant, Patrick G. 146Green, Michelle L. 81, 82Grossman, Arthur R. 97
HHaaland, David M. 24, 33Hadi, Masood Z. 8, 14, 17
Index
171Indexed by page number.
Hainfeld, James 120Haller, Imke 88Hamad, Sawsan 33, 100Hanson, David 28Hara, Christine A. 121Harwood, Caroline S. 104, 105Harzman, Christina 99Havin, Victor 25Hazen, Terry C. 8, 11He, Qiang 8, 14He, Zhili 8, 14Heffelfinger, Grant S. 20Herman, Rob 24Herzberg, Osnat 137Hettich, Robert 15, 87Hiddessen, Amy 122Higdon, Roger 51Hill, Eric 52Hinz, Angela 122Hixson, Kim K. 143, 148Holland, Trevin 88Hollars, Christopher W. 121Holman, Hoi-Ying 8, 11, 126Holmes, Dawn E. 40, 46Holzman, Ted 51Hommes, Norman 93Hooker, Brian S. 15, 16Howard, Meredith 91Hoyt, Peter 16Hu, Ping 107Huang, Katherine 6, 8Huang, Rick 8, 11Hubbard, K. 76Hunt, Dana E. 89Hurst, Gregory B. 15, 16, 19Huser, Thomas 121, 122Hutcheon, Ian D. 123Hutchison, Clyde A., III 60, 61
IIakounine, Alexander 140Iqbal, Tahera 31Iyer, Gopal 55Iyer, Lakshminarayan 83Iyer, Prabha P. 64
JJacobsen, Janet 8, 11Jaffe, Jacob D. 4Jakobsson, Eric 83Jensen, Grant 117Jiang, T. 34Jonsson, Amanda L. 152
Joyner, Dominique 8, 11Judd, Ellen 126Jung, David 37
KKane, Sean 67Kang, Katherine 24, 25Kaplan, Samuel 144Karp, Peter D. 78, 81, 82Kay, Brian K. 141Kaye, Jonathan 40Keasling, Jay D. 8, 14, 147Kehoe, John 141Keller, Keith 8Keller, Martin 8, 11, 14, 88Kennel, Steve J. 15, 16Kent, Stephen B. 134Kery, Vladimir 15, 16, 18, 19Khare, Tripti 58Kim, Arnold 75Kim, Byoung-Chan 44Kim, Sang-Hoon 99Kim, Younggyu 55Kirchman, David L. 112Klappenbach, Joel 51Klein, David 130Klepac-Ceraj, Vanja 89Knorr, Andrea L. 69Kohanski, M. K. 56Kolker, Eugene 50, 51, 140Kolker, Natali 51Kong, Xiangxu 55Konstantinidis, Konstantinos T. 51Kriplani, Ushma 141Krishnamurthy, Ramya 21Krushkal, Julia 42, 44Kuske, Cheryl 88Kyrpides, Nikos 109
LLaidlaw, David 130Land, Miriam L. 51Landorf, Elizabeth 139, 140, 141Lane, Stephen M. 121Lane, Todd W. 31, 40Laney, Samuel 95Langry, Kevin 124Lankford, Trish K. 16Lanthier, Martin 40Lapidus, Alla 109Larimer, Frank W. 15, 18, 19, 50, 51, 104, 105, 109Lartigue, Carole 60Laub, Michael 108
Index
172Indexed by page number.
Laurence, Ted 121Lawrence, Charles E. 50, 51, 70, 72, 86Leang, Ching 44Leary, Julie 147Leavell, Michael D. 31LeDuc, Phil 117Lee, Pei-Yun 91Lee, Tom 78Lei, Chenghong 132Leighton, Terrance J. 127Leptos, Kyriacos C. 4Li, Huilin 120Li, Huiying 150Li, Ting 14Liao, James C. 105Light, Yooli K. 31Lightstone, Felice 75Lilburn, Timothy G. 72Lin, Chiann-Tso 16Lin, Xiaoxia 3Lindell, Debbie 4Lindsey, Susan D. 74Lipton, Mary S. 51, 57, 143, 144, 148Liu, Jun 132Liu, Yongqing 14Livesay, Eric A. 16, 143Llwellyn, Richard 150Londer, Yuri 139Lovley, Derek R. 40, 42, 44, 46, 48, 58, 148Lowry, David F. 135Lu, Tse-Yuan S. 16
MMahadevan, R. 42Maier, Klaus 79Makarova, Kira S. 51Makhatadze, George I. 134Malkin, Alexander J. 127Mansfield, Betty K. 65Mao, F. 30, 34Maranas, Costas D. 84Marcelino, Luisa A. 89Marcia, Roummel F. 74Marletta, Michael 147Marsh, Terence L. 99Martin, Shawn 28, 32Martin, Sheryl A. 65Martino, Anthony 31, 40Martino, Tony 25Martiny, Adam C. 5, 90Maruf, Mahir 60Mathur, Eric 95Mayer, M. Uljana 135
McAdams, Harley H. 107, 110, 126McCarthy, Kevin 46McClay, David 91McCue, Lee Ann 50, 51, 70, 72McDonald, W. Hayes 15, 19McKeown, Cathy K. 16McLean, Jeff 52, 135Mehta, Teena 46Mester, Tunde 46Methé, Barbara 44, 46, 48Miles, Robin 122Miller, Lisa M. 138Mills, Marissa D. 65Minokawa, Takuya 91Mitchell, Julie C. 74Monroe, Matthew E. 51, 143, 144, 148Moore, Priscilla A. 16Moore, Ronald J. 16, 143Morrell, Jenny 15Mottaz, Heather M. 148Moult, John 137Mukhopadhyay, Aindrila 8, 11, 14Munske, Gerhard 114, 115Mutatu, Washington 99
NNatarajan, Shreedhar 83Natarajan, Vijaya 6, 25Naughton, Thomas 25Nealson, Kenneth H. 50, 51, 123Nevin, Kelly 40, 44, 46, 48Newberg, Lee A. 72Ngowe, Michael 99Nie, Shuming 117Noordeweir, Mick 95Noy, Aleksandr 124Nunez, Cinthia 44Nylander, Kim 65
OO’Neil, Regina 40, 44Oda, Yasuhiro 104Oliveri, Paola 91Olman, V. 30, 34Omelchenko, Marina V. 57Ortoleva, P. J. 76Osterman, Andrei 100Ovecka, Milan 133Overbeek, Ross 100
Index
173Indexed by page number.
PPacocha, Sarah 89Pal, Debnath 150Paladugu, Sri 79Palenik, Brian 24, 25, 34Palmblad, Magnus 122, 146Pasa-Tolic, Ljiljana 51, 148Paulsen, Ian 24, 25Pavlik, Peter 133Pelletier, Dale A. 15, 16Peppler, Terese 139, 140, 141Petritis, Konstantinos 143Pfannkoch, Cynthia 60, 61Pharino, Chanathip 89Pharkya, Priti 84Phinney, Brett 99Picone, Alex F. 51Pinchuk, Grigoriy 51, 52Plimpton, Steven J. 38Plomp, Marco 127Podar, Mercha 95Podevels, Angela M. 110Polz, Martin F. 89Pomposiello, Pablo 44Popa, Radu 123Posewitz, Matthew C. 97Postier, Brad 40Pouliot, Yannick 78Price, Morgan 6, 8Purvine, Samuel 51
QQiu, Xiaoyun 51, 57
RRam, Rachna J. 87Rappé, Michael S. 95Ratto, Timothy V. 124Redding, Alyssa 14Reguera, Gemma 46Ren, Xiajia 128Reppas, Nikkos B. 5Richardson, Paul 109Riley, Monica 50, 51, 54Riley, Robert 150Ringbauer, Joseph A., Jr. 8, 14Rintoul, Mark D. 28, 32, 38Roberson, Robert 100Roh, Jung Hyeob 144Rohwer, Forest 103Romine, Margaret F. 51, 52, 144, 148Roth, Martin 67
Ruan, Jin 67Rubin, Eddy 109
SSaffarini, Daad A. 52Salwinski, Lukasz 150Samanta, Sudip K. 104Samatva, Nagiza 21Sapra, Rajat 31Sarma-Rupavtarm, Ramahi 89Sauro, Herbert M. 79Sayavedra-Soto, Luis 93Sayyed-Ahmad, A. 76Schaeffer, R. Dustin 152Schilling, Christophe H. 42, 67Schlitter, Jürgen 38Schmoyer, Denise D. 15, 18, 19Schmutz, Jeremy 109Scholle, Michael 141Schwarz, Fred 137Scott, Bari 153, 155Scott, Kathryn A. 152Segrè, Daniel 3Segura, D. 42Seibert, Michael 97Serres, Margrethe H. 51, 54Shah, Manesh B. 15, 18, 19, 87Shapiro, Lucy 110Shelbolina, Zhenya 40Shen, Yufeng 143Shi, Liang 135Shields, Sharon 146Shin, Yongsoon 132Shiyanov, Pavel 141Shoshani, Arie 25Shuler, Michael L. 68Sinclair, Michael B. 33Singh, Anup 8, 14Slepoy, Alex 38Smith, Hamilton O. 60, 61, 62, 63, 64Smith, Harold 137Smith, Joel 91Smith, Richard D. 51, 143, 144, 148Smithson, David 142Spormann, Alfred M. 112Sprinzak, Einat 150Squier, Thomas C. 135Srivastava, Ranjan 69Stadsklev, Kurt 67Stahl, David 8, 11Stanek, Dawn 14Stanley, F. 76Stapels, Martha D. 95
Index
174Indexed by page number.
Steward, Robert E. 152Stolyar, Sergey 8, 11Strauss, Charlie 32Strittmatter, Eric F. 19Strong, Michael 150Studier, F. William 138Su, Z. 30, 34Sui, Haixin 126Sulchek, Todd A. 124Sullivan, Matthew B. 103Sun, Jun 8, 11, 14Sun, Lianhong 14Sundin, George 57Sutherland, John C. 138
TTabita, F. Robert 105Tai, P. K. Amos 90Talley, Chad E. 121, 122Tang, Xiaoting 114, 115Tarasow, Ted 142Tasneem, Asba 83Tavano, Christine L. 110, 144Thakar, Rajendra 67Thelen, Michael P. 87Thomas, Ed 24Thompson, Anne W. 90Thompson, Dorothea 8, 11, 14Thompson, Janelle R. 89Tiedje, James M. 50, 51, 57, 99Timlin, Jerilyn A. 24, 25, 33Tok, Jeffrey B.-H. 142Tolic, Nikola 114, 115, 144Tollaksen, Sandra L. 58Tran, Hoa 44Travnik, Evelyn 67Tripp, James 95Tsang, Allen 44Tsapin, Sasha 51Tu, Qiang 91Tuncay, K. 76Tuominen, Mark T. 46Tyson, Gene W. 87
UUnkefer, Clifford J. 151
VVajrala, Neeraja 93Vallabhajosyula, Ravishankar R. 79van de Meene, Allison 100van Dien, Steve 8, 11, 67
Varala, K. 76Varma, Sameer 83Vashee, Sanjay 62Vasilenko, Alexander 57Velappan, Nileena 133Venter, J. Craig 60, 61, 62, 63, 64VerBerkmoes, Nathan 87Vergin, Kevin L. 95Verma, Seema 135Vermaas, Wim 33, 100Victry, Kristin D. 16
WWabb, Dave L. 19Wagner, Valerie 78Walcher, Marion 88Walker, Christopher 8Wall, Judy 8, 11, 14Wang, Bing 100Wang, Yue 6Weber, Peter K. 123Webster, Jennifer 48Wei, Jing 8, 14Wei, Xueming 93Weigele, Peter 103Weis, Robert 44Weiss, Shimon 50, 55Wemmer, David 147Werner-Washburne, Margaret 28Wheeler, Elizabeth 122Wheeler, Katherine E. 127White, Amanda M. 18Whitelegge, Julian 100Wiback, Sharon 67Wierzbowski, J. 56Wiley, Steven 15Wilson, David B. 102Winhold, Heiko 121Wolf, Denise 8Wu, H. 34Wu, Liyou 14, 57Wu, Yifei 141Wyborski, Denise 8, 11, 88Wyrick, Judy M. 65
XXiao, Jie 128Xie, X. Sunney 128Xu, Qing 63Xu, Ying 30, 34Xun, Luying 128
Index
175Indexed by page number.
YYan, Bin 42, 44Yan, Ping 135Yang, Haw 119Yang, Lin 138Yates, John R., III 51, 58Yeates, Todd 150Yen, Huei-Che 8, 11, 14Yooseph, Shibu 60, 63Young, Malin M. 17Yu, Ji 128Yu, Wen 14
ZZakrajsek, Brian A. 51Zane, Grant 8, 11, 14Zeng, Xiaihua 144Zengler, Karsten 88Zhang, Kun 5Zhang, Yuan 72Zhang, Zhaoduo 31, 40Zhao, Rui 143Zhou, Jizhong 8, 11, 14, 50, 51, 52, 57, 105Zhu, Harry 115Zhu, Wenhong 51, 58Zimmerman, J. M. 96Zinser, Eric 4Zucker, Jeremy 3Zuniga, Beto 8, 11
Index
176Indexed by page number.
Index
177Indexed by page number.
American Type Culture Collection 72Argonne National Laboratory 16, 50, 51, 58, 139,
140, 141Arizona State University 33, 100A & M College 96BIATECH 50, 51, 140Boston University 50, 56Brookhaven National Laboratory 120, 138Brown University 70, 72, 86California Institute of Technology 91, 117Carnegie Institution of Washington 97Carnegie Mellon University 117Center for Advanced Research in Biotechnology
137Children’s Hospital Oakland Research Institute 127Colorado School of Mines 97Columbus State University 99Cornell University 68, 102Diversa Corporation 8, 11, 14, 88, 95Duke University 91East Carolina University 138Emory University 117Fellowship for the Integration of Genomes (FIG)
100Gener8, Inc. 130Gene Network Sciences 68Genomatica, Inc. 42, 67Georgia Institute of Technology 117Harvard Medical School 3, 4, 5Harvard University 108, 128Hawaii Institute of Marine Biology 95Howard Hughes Medical Institute 6Indiana University, Bloomington 76J. Craig Venter Institute 60, 61, 62, 63, 64Joint Genome Institute 109Keck Graduate Institute 79Lawrence Berkeley National Laboratory 6, 8, 11,
14, 25, 107, 109, 119, 126, 147Lawrence Livermore National Laboratory 75, 109,
121, 122, 123, 124, 127, 142, 146Los Alamos National Laboratory 32, 88, 109, 133,
151Louisiana State University 96Marine Biological Laboratory 50, 51, 54Massachusetts Institute of Technology 4, 5, 89, 90,
103Miami University 8, 11Michigan State University 50, 57, 72, 99
National Center for Genome Resources 34National Institutes of Health 51, 57, 83National Renewable Energy Laboratory 97New England Biolabs 89Oak Ridge National Laboratory 8, 11, 14, 15, 16,
18, 19, 21, 22, 25, 30, 34, 37, 50, 51, 52, 57, 65, 87, 104, 105, 109
Ohio State University 105Oregon State University 93, 95Pacific Northwest National Laboratory 15, 16, 18,
19, 50, 51, 52, 57, 58, 88, 114, 115, 132, 135, 143, 144, 148
Pennsylvania State University 84, 134Rensselaer Polytechnic Institute 72Roche Applied Science 141Ruhr-Universität Bochum 38Sandia National Laboratories 8, 14, 17, 20, 24, 25,
28, 31, 32, 33, 38, 40, 132San Diego State University 103Scripps Institution of Oceanography 24, 25, 34Scripps Research Institute 51, 58SoundVision Productions 153, 155SRI International 78, 81, 82Stanford Human Genome Center 109Stanford University 112Stanford University School of Medicine 107, 110,
126The Institute for Genomic Research 24, 25, 44, 46,
48Tohoku University 91Uniformed Services University of the Health Sci-
ences 57University of British Columbia 105University of California, Berkeley 6, 87University of California, Davis 124University of California, Los Angeles 50, 55, 100,
105, 150University of California, Merced 75University of California, Riverside 34University of California, Santa Barbara 55University of California, San Diego 74University of California, San Francisco 142University of Chicago 134University of Connecticut, Storrs 69University of Delaware 112University of Georgia, Athens 30, 34University of Illinois, Urbana 83University of Iowa 104, 105
Institution Index
Index
178Indexed by page number.
University of Massachusetts, Amherst 40, 42, 44, 46, 48, 58, 148
University of Missouri, Columbia 8, 11, 14University of New Mexico, Albuquerque 28University of Southern California 50, 51, 123University of Stuttgart 79University of Tennessee, Knoxville 87University of Tennessee, Memphis 42University of Tennessee Health Science Center 44University of Texas Medical School 144University of Toronto 140University of Washington, Seattle 8, 11, 152University of Wisconsin, Madison 74, 110, 144University of Wisconsin, Milwaukee 52Wadsworth Center 50, 70, 72Washington State University 114, 115Waters Corporation 95Woods Hole Oceanographic Institution 89Xavier University 87