RNA Secondary Structure Prediction Using Stochastic Context –Free Grammar And Evolutionary History B. Knudsen and J. Hein Department of Genetics and Ecology.
BLAST
Gutell 119.plos_one_2017_7_e39383
Chapter 23 - Molecular evolution: Types of questions: How do genomes, DNA, and protein sequences evolve? Dynamics and mode of change. Rates of change.
Bioinformatics Finding signals and motifs in DNA and proteins Expectation Maximization Algorithm MEME The Gibbs sampler Lecture 10.
Democratizing Bioinformatics Research in a High School Biology Classroom Bertram C. Bruce, Umesh Thakkar, Eric G. Jakobsson, Jo Williamson, Paul R. Lock.
Sequence analysis course Lecture 7 Multiple sequence alignment 3 of 3 Optimizing progressive multiple alignment methods.
Protein Multiple Sequence Alignment Sarah Aerni CS374 December 7, 2006.
Pair-wise alignment quality versus sequence identity (Vogt et al., JMB 249, 816-831,1995)
Pairwise alignment
Multiple Sequence Alignment (II)
Sequence alignments and sequence database searching Igor Kuznetsov Bioinformatics workshop Part I
