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CHAPTER FIVE OSPREY: Protein Design with Ensembles, Flexibility, and Provable Algorithms Pablo Gainza*,3, Kyle E. Roberts*,3, Ivelin Georgiev*,1, Ryan H. Lilien†, Daniel…
CHAPTER FIVE OSPREY: Protein Design with Ensembles Flexibility and Provable Algorithms Pablo Gainza*3 Kyle E Roberts*3 Ivelin Georgiev*1 Ryan H Lilien† Daniel A Keedy‡…
CHAPTER FIVE OSPREY: Protein Design with Ensembles Flexibility and Provable Algorithms Pablo Gainza*3 Kyle E Roberts*3 Ivelin Georgiev*1 Ryan H Lilien† Daniel A Keedy‡…
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Determination of protein structural ensembles using cryo-electron microscopy Massimiliano Bonomi1 and Michele Vendruscolo Available online at wwwsciencedirectcom ScienceDirect…
Accessing protein conformational ensembles using room-temperature X-ray crystallography James S. Frasera,1, Henry van den Bedemb, Avi J. Samelsona, P. Therese Langa, James…
Slide 1 Probabilistic Ensembles for Improved Inference in Protein-Structure Determination Ameet Soni* and Jude Shavlik Dept. of Computer Sciences Dept. of Biostatistics and…
Molecular Docking to Ensembles of Protein Structures Ronald M A Knegtel Irwin D Kuntz and C M Oshiro* Department of Pharmaceutical Chemistry School of Pharmacy University…
Protein structural ensembles are revealed by redefining X-ray electron density noise P. Therese Langa, James M. Holtonb,c, James S. Frasera,1, and Tom Albera,2 aDepartment…
d e pa rt m e n t o f b i o lo g y u n i ve r s i t y o f co pe n h ag e n Inference problems in structural biology: protein structures and protein structure ensembles PhD…
OSPREY 30: Open-Source Protein Redesign for You with Powerful New Features Mark A Hallen† ac Jeffrey W Martin†a Adegoke Ojewole‡d Jonathan D Jou‡a Anna U Lowegard‡d…
PROTEIN INTERACTION MAPPING: USE OF OSPREY TO MAP SURVIVAL OF MOTOR NEURON PROTEIN INTERACTIONS by Margaret Barnhart An Internship presented in Partial Fulfillment of the…
A superposition free method for protein conformational ensemble analyses and local clustering based on a backbone differential geometry representation Antonio Marinho da…
Multimodel ensembles of wheat growth: many models are better than one P I ERRE MARTRE 1 , 2 , DAN IEL WALLACH 3 , S ENTHOLD ASSENG 4 , FRANK EWERT 5 , J AMES W . JONES 4…
Molecular Docking to Ensembles of Protein Structures Ronald M. A. Knegtel, Irwin D. Kuntz and C. M. Oshiro* Department of Pharmaceutical Chemistry School of Pharmacy University…
Interpretation of Interfacial Protein Spectra with Enhanced Molecular Simulation Ensembles Helmut Lutz,*,†,§,# Vance Jaeger,*,‡,¶,# Tobias Weidner,† and Bert L. de…
Improving the analysis of biological ensembles through extended similarity measuressimilarity measures Liwei Chang,a Alberto Perez *ab and Ramón Alain Miranda-Quintana
Mathematical Models of Folded and Unfolded Protein Ensembles Gregory Chirikjian Department of Mechanical Engineering Johns Hopkins University Topics of This Talk Conformational…
Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations Michael C Baxaab Esmael J Haddadianc…
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