TGAC BrowserA new open-source client-side rendering genomic browse
www.tgac-browser.tgac.ac.uk
Refresh Move left at a large scale
Move left(1bp)
Move right(1bp)
Move right at a large scale
zoom in at a large scale
zoom in at a small scale
zoom out at a small scale
zoom out at a large scale
select entire scaffold
Search box
start and end of scaffold to save
current session
export json file
choose track(s) to display
Figure 1: Labels showing various buttons on the Browser
Controls
www.tgac-browser.tgac.ac.uk
Choose the tracks to display
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Track/Settings: to select and display the track(s)
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Merge two tracks
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Merged tracks
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Select a region to dump the fasta sequence
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Select/download the fasta sequence of selected region
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Zoom into a gene
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Edit the gene label
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Delete a track
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Flagging a gene
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Flagged gene
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Save current session
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Load an already saved session
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Export the current session
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Exported session as a json file, which can later be loaded
www.tgac-browser.tgac.ac.uk
To retrieve cDNA/peptide seq
www.tgac-browser.tgac.ac.uk
To retrieve protein domains predicted by InterProScan
www.tgac-browser.tgac.ac.uk
Submitting a BLAST query
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BLAST result in the BLAST track
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BLAST result as per the alignment scores
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Thanks
Contact Details:
1.Anil [email protected]
2.Xingdong [email protected]
3.Robert [email protected]
4.Mario [email protected]
www.tgac-browser.tgac.ac.uk