Supplemental Fig. S1
0%
5%
10%
15%
20%
25%
extr
acel
lula
r(P
=0.
000)
cell
wal
l(P
=0.
000)
rib
osom
e(P
=0.
001) ER
(P=
0.29
4)
golg
i app
arat
us(P
=0.
005)
plas
ma
mem
bran
e(P
=0.
000)
mito
chon
dria
(P=
0.00
0)
cyto
sol
(P=
0.55
3)
othe
r ce
llula
r co
mpo
nent
s (P
=0.
000)
nucl
eus
(P=
0.00
0)
othe
r m
embr
anes
(P=
0.97
0)
plas
tid(P
=0.
000)
othe
r cy
topl
asm
ic
com
pone
nts
(P=
0.38
3)
unkn
own
cellu
lar
com
pone
nts(
P=
0.52
0)
chlo
ropl
ast
(P=
0.00
0)
othe
r in
trac
ellu
lar
com
pone
nts
(P=
0.00
0)
A. Cellular component
Brassica COSA. thaliana
0%
5%
10%
15%
20%
25%
30%
rece
ptor
bin
ding
or
act
ivity
(P
=0.
049)
stru
ctur
al m
olec
ule
activ
ity (
P=
0.20
7)
tran
spor
ter
activ
ity(P
=0.
000)
othe
r m
olec
ular
fu
nctio
ns (
P=
0.00
3)
tran
scrip
tion
fact
or a
ctiv
ity(P
=0.
003)
kina
se a
ctiv
ity(P
=0.
000)
nucl
eic
acid
bin
ding
(P=
0.29
2)
nucl
eotid
e bi
ndin
g(P
=0.
307)
DN
A o
r R
NA
bin
ding
(P=
0.77
7)
tran
sfer
ase
activ
ity(P
=0.
000)
othe
r en
zym
e ac
tivity
(P=
0.02
0)
hydr
olas
e ac
tivity
(P=
0.06
3)
othe
r bi
ndin
g(P
=0.
001)
prot
ein
bind
ing
(P=
0.00
0)
unkn
own
mol
ecul
ar
func
tions
(P
=0.
000)
B. Molecular function
Brassica COSA. thaliana
0%
5%
10%
15%
20%
25%
30%
elec
tron
tra
nspo
rt o
ren
ergy
pat
hway
s (P
=0.
176)
sign
al t
rans
duct
ion
(P=
0.00
0)
tran
scrip
tion,
DN
A-
depe
nden
t (P
=0.
632)
tran
spor
t(P
=0.
000)
othe
r bi
olog
ical
pro
cess
es (
P=
0.00
0)
resp
onse
to
abio
tic o
r bi
otic
stim
ulus
(P
=0.
000)
prot
ein
met
abol
ism
(P=
0.08
2)
cell
orga
niza
tion
and
biog
enes
is (
P=
0.59
2)
DN
A o
r R
NA
met
abol
ism
(P=
0.00
0)
resp
onse
to
stre
ss(P
=0.
011)
deve
lopm
enta
l pr
oces
ses
(P=
0.12
7)
othe
r m
etab
olic
pr
oces
ses
(P=
0.00
0)
unkn
own
biol
ogic
al
proc
esse
s (P
=0.
000)
othe
r ce
llula
rpr
oces
ses
(P=
0.00
0)
C. Biological process
Brassica COSA. thaliana
Supplemental Fig. S2
COS0015 COS0084
At Rs A B C AB AC BC A+B A+C B+C At Rs A B C AB AC BC A+BA+C B+C
COS0264 COS0420
At Rs A B C AB AC BC A+BA+C B+C At Rs A B C AB AC BC A+BA+C B+C
COS0566 COS0842
At Rs A B C AB AC BC A+B A+C B+C At Rs A B C AB AC BC A+BA+C B+C
Supplemental Fig. S3
0.02
B. rupestris B. rapa
B. macrocarpa B. bivoniana
B. drepanensis B. villosa
B. oleracea B. nigra
R. sativus B. spinescens
B. fruticulosaB. repanda
A. thaliana
9859
75
84
90
27
28
6527
Supplemental Fig. S4
AK1
AK2
AK3
AK4
AK5
AK6
AK7
AK8
Supplemental Fig. S5.
LF
MF1
MF2
A. AK1
Supplemental Fig. S5
B. AK2
LF
MF1
MF2
Supplemental Fig. S5
C. AK3
LF
MF1
MF2
Supplemental Fig. S5
D. AK4
LF
MF1
MF2
Supplemental Fig. S5
E. AK5
LF
MF1
MF2
Supplemental Fig. S5
F. AK6
LF
MF1
MF2
Supplemental Fig. S5
G. AK7
LF
MF1
MF2
Supplemental Fig. S5
H. AK8
LF
MF1
MF2
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