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Page 1: ORBITA: A case study in the analysis and reporting …gelman/research/unpublished/S...ORBITA: A case study in the analysis and reporting of clinical trials Andrew Gelman, John Carlin

ORBITA:Acasestudyintheanalysisandreportingofclinicaltrials

AndrewGelman,JohnCarlinandBrahmajeeKNallamothu

14Mar2018DepartmentofStatisticsandPoliticalScience,ColumbiaUniversity,NewYorkCity,NY,UnitedStates(AndrewGelman,professor);ClinicalEpidemiology&Biostatistics,MurdochChildren’sResearchInstitute,MelbourneSchoolofPopulationandGlobalHealthandDepartmentofPaediatrics,UniversityofMelbourne,Melbourne,Australia(JohnCarlin,professor);DepartmentofInternalMedicine,UniversityofMichiganMedicalSchool,AnnArbor,MI,UnitedStates(BrahmajeeKNallamothu,professor);Correspondenceto:[email protected]:WethankDougHelmreichforbringingthisexampletoourattention,ShiraMitchellforhelpfulcomments,andtheOfficeofNavalResearch,DefenseAdvancedResearchProjectAgency,andtheNationalInstitutesofHealthforpartialsupportofthiswork.Competinginterests:Dr.GelmanandDr.Carlinreportnocompetinginterests.Dr.NallamothuisaninterventionalcardiologistandEditor-in-ChiefofajournaloftheAmericanHeartAssociationbutotherwisehasnocompetinginterests.WordCount:2085

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Introduction

ORBITA(ObjectiveRandomisedBlindedInvestigationWithOptimalMedicalTherapyofAngioplastyinStableAngina)wasarandomizedclinicaltrialofapproximately200patientsinwhichhalfthepatientsreceivedstentsandhalfreceivedaplaceboprocedure.Itssummaryfindingwasthatstentingdidnot“increaseexercisetimebymorethantheeffectofaplaceboprocedure”withthemeandifferenceinthisprimaryoutcomebetweentreatmentandcontrolgroupsreportedas16.6sec(95%confidenceinterval,−8.9to+42.0sec)andap-valueof0.20.

IntheNewYorkTimes,Kolata(2017)reportedthefindingas“unbelievable,”remarkingthatit“stunnedleadingcardiologistsbycounteringdecadesofclinicalexperience.”Indeed,oneofus(BKN)wasquotedasbeinghumbledbythefindingasmanyhadexpectedapositiveresult.Ontheotherhand,Kolatanoted,“therehavelongbeenquestionsabout[stents’]effectiveness.”Attheveryleast,thewillingnessofdoctorsandpatientstoparticipateinacontrolledtrialwithaplaceboproceduresuggestssomedegreeofexistingskepticismandclinicalequipoise.

ORBITAwasalandmarktrialduetoitsinnovativeuseofaplaceboprocedure.However,substantialquestionsremainevenafterORBITAregardingtheroleofstentinginstableangina.Itisawell-knownstatisticalfallacytotakearesultthatisnotstatisticallysignificantandreportitaszero,aswasessentiallydoneherebasedonthep-valueof0.20fortheprimaryoutcome.Hadthiscomparisonhappenedtoproduceap-valueof0.04,wouldtheheadlinehavebeen,“‘Believable’:HeartStentsIndeedEaseChestPain”?

ThepurposeofthispaperistotakeacloserlookatthelackofstatisticalsignificanceinORBITAandthelargerquestionsitraisesaboutstatisticalanalyses,statisticallybasedversusclinicaldecision-making,andthereportingofclinicaltrials.Thisisimportantbecausealotofcertaintyseemstobehangingonasmallbitofdata.

Dichotomizedthresholdsareabigproblem,henceinthispaperwewillavoiddiscussing“statisticalsignificance”exceptwhendiscussingissuesofhowresultsareorcouldbereported.

StatisticalanalysisoftheORBITAtrial

Adjustingforbaselinedifferences.InORBITA,exercisetimeinastandardizedtreadmill

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test—theprimaryoutcomeinthepreregistereddesign—increasedonaverageby28.4secinthetreatmentgroupcomparedtoanincreaseofonly11.8secinthecontrolgroup.Asnotedabove,thisdifferencewasassociatedwithap-valuegreaterthan0.05.Hence,followingconventionalrulesofscientificreportingitwastreatedaszero—aninstanceoftheregrettablycommonstatisticalfallacyofpresentingnon-statistically-significantresultsasconfirmationofthenullhypothesisofnodifference.

However,theestimateusinggaininexercisetimedoesnotmakefulluseofthedatathatwereavailableondifferencesbetweenthegroupsatbaseline(VickersandAltman,2001,Harrell,2017a).Thetreatmentandplacebogroupsdifferedintheirpre-treatmentlevelsofexercisetime,withmeanvaluesof528.0and490.0s,respectively(SupplementaryTable).Thissortofdifferenceisfine—randomizationassuresbalanceonlyinexpectation—butitisimportanttoadjustforthisdiscrepancyinestimatingthetreatmenteffect.Inthepublishedpaper,theadjustmentwasperformedbysimplesubtractionofthepre-treatmentvalues:

Gaininexercisetime: (ypost−ypre)T−(ypost−ypre)

C, (1)

Butthisover-correctsfordifferencesinpre-testscores,becauseofthefamiliarphenomenonof“regressiontothemean”—justfromnaturalvariation,wewouldexpectpatientswithlowerscoresatbaselinetoimprove,relativetotheaverage,andpatientswithhigherscorestoregressdownward.

Theoptimallinearestimateofthetreatmenteffectisactually:

Gaininexercisetime: (ypost−βypre)T−(ypost−βypre)

C, (2)

whereβisthecoefficientofypreinaleast-squaresregressionofypostonypre,also

controllingforthetreatmentindicator.

Theestimatein(1)isaspecialcaseoftheregressionestimate(2)correspondingtoβ=1.Giventhatthepre-testandpost-testmeasurementshavenearlyidenticalvariances,wecananticipatethattheoptimalβwillbelessthan1,whichwillreducethecorrectionfordifferenceinpre-testandthusincreasetheestimatedtreatmenteffectwhiledecreasingthestandarderror.

AnadjustedanalysisusingtheinformationavailableisexplainedindetailinBox1.Thep-valuefromthisadjustedanalysisis0.09:asexpected,lowerthanthep=0.20fromtheunadjustedanalysis.Whatisrelevantisnotwhetherornotthisnewp-valuehasbecome

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“statisticallysignificant”butratherthereportedp-valueissubjecttochangebasedonalternativeanalyses.

Withindifferentconventionsforscientificreportingandfordifferentfields,ap-valueof0.09isconsideredtobestatisticallysignificant;forexample,inarecentsocialscienceexperimentpublishedintheProceedingsoftheNationalAcademyofSciences,Sands(2017)presentedacausaleffectbasedonap-valueoflessthan0.10,andthiswasenoughforpublicationinatopjournalandinthepopularpress.Voxmentionedthatworkuncriticallywithoutanyconcernregardingsignificancelevels(Resnick,2017).Bycontrast,Voxreportedstentsasaprimeexampleofthe“epidemicofunnecessarymedicaltreatments”afterORBITA(Belluz,2017).

TheseconcernsaredeepenedfurtherwhenoneconsidershowsensitiveresultsfromORBITAwerefromastatisticalstandpoint.Tobetterunderstandthisonecanperformasimplebootstrapanalysis,computingtheresultsthatwouldhavebeenobtainedfromreanalyzingthedata1000times,eachtimeresamplingpatientsfromtheexistingexperimentwithreplacement(Efron,1979).Asrawdatawerenotavailabletous,weapproximatedusingthenormaldistributionbasedontheobservedz-scoreof1.7.Theresultwasthat,in40%ofthesimulations,stentsoutperformedplacebowithp-valueslessthan0.05.Thisisnottosaythatstentsreallyarebetteronaveragethanplaceboinimprovingexercisetime—thedataalsoappearconsistentwithanulleffect.Thetake-homepointofthisexperimentisthattheresultscouldeasilyhavegone“theotherway”,whenreportingisforcedintoabinaryclassificationofstatisticalsignificance.

StatisticallyBasedversusClinicalDecision-Making

Injustifyingtheirstudydesignandsamplesize,Al-Lameeetal.(2017)wrote:“Evidencefromplacebo-controlledrandomisedcontrolledtrialsshowsthatsingleantianginaltherapiesprovideimprovementsinexercisetimeof48–55sec…Giventhepreviousevidence,ORBITAwasconservativelydesignedtobeabletodetectaneffectsizeof30sec.”Theestimatedeffectof21secwithstandarderror12secisconsistentwiththe“conservative”effectsizeestimateof30secgiveninthepublishedarticle.Soalthoughtheexperimentalresultsareconsistentwithanulleffect,theyareevenmoreconsistentwithasmallpositiveeffect.

Onemightask,however,abouttheclinicalsignificanceofsuchatreatmenteffect,whichwecandiscusswithoutrelevancetop-valuesorstatisticalsignificance.Forsimplicity,supposewetakethepointestimatefromthedataatfacevalue.Howshouldwethinkaboutanincreaseinaverageexercisetimeof21sec?Onewaytoconceptualizethisisin

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termsofpercentiles.Thedatashowapre-randomizationdistribution(averagingthetreatmentandcontrolgroups)withameanof509secandastandarddeviationof188sec.Assuminganormalapproximation,anincreaseinexercisetimeof21secfrom509to530secwouldtakeapatientfromthe50thpercentiletothe54thpercentileofthedistribution.Lookedatthatway,itwouldbehardtogetexcitedaboutthiseffectsize,evenifitwerearealpopulationshift.Indeed,arecentstudyafterORBITAsuggestedironicallythatsuchgainsarepossibleduringatreadmilltestbysimplyplayingmusic.

Thus,thelargerclinicalquestionishowtobalancethelong-termbenefitsofstentswithrisksoftheprocedure.Itdoesnotseemreasonableforapersontoreceivestentsjustforapotentialbenefitof21secofexercisetimeonastandardizedtreadmilltest—orevenahypothesizedlargerbenefitof50sec,whichwouldstillonlyrepresenta10%improvementforanaveragepatientinthisstudy.Yetmaybea5%to10%increaseisconsequentialinthiscaseasitcouldimprovequalityoflifeforapatient.Perhapsthissmallgaininexercisetimeisassociatedwiththeneedforlessmedications,fewerfunctionallimitationsorgreatermobility.Ifso,however,onemightpostulatethisgainwouldhavebeenapparentinassessmentsofanginaburden,anditwasnot.

Abigconcernhereisthatthesepatientswerealreadydoingprettywellonmedications—thatis,theyalreadyhadalowsymptomfrequencybeforestenting.Forexample,anginafrequencyasmeasuredbytheSeattleAnginaQuestionnairewas63.2afteroptimizingmedicationsandbeforestentinginthetreatmentgroup.Thisroughlytranslatesas“monthly”angina(JohnSpertus,personalcommunication).Howdoesastudywithafollow-upofjust6weeksexpecttoimproveanoutcomethathappensthisinfrequently?Infact,oneofthegreatdebatessurroundingORBITAisthatthosewhodiscountthetrialsuggestitenrolledpatientswhotypicallydonotreceivestentsinroutinepractice.ThosewhobelieveORBITAisagame-changerarguethattheselesssymptomaticpatientsactuallymakeupalargeproportionofthosereceivingstents.

Finally,arestentsreallybeinggiventopatientswithstableanginajusttoimprovefitnessortoreducesymptoms?Oristhereacontinuedexpectationthatstentshavelong-termbenefitsforpatients,despiteearlierdatafromstudiesliketheClinicalOutcomesUtilizingRevascularizationandAggressiveDrugEvaluation(COURAGE)study(Boden,2007)?Thiswouldseemtobethekeyquestion,inwhichcasetheshort-termeffects,orlackthereof,foundintheORBITAstudyarelargelyirrelevant.Otherlargertrials,suchasInternationalStudyofComparativeHealthEffectivenessWithMedicalandInvasiveApproaches(ISCHEMIA,see:https://clinicaltrials.gov/ct2/show/NCT01471522)areconsideringthismorefundamentalquestionbutwillnothaveaplaceboprocedure.

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EvidencefromORBITAthatpointedtowardconsistentimprovementsinthephysiologicalparameterofischemiathroughendpointssuchasfractionalflowreserveandstressechosuggeststhereislittlequestionthatsomephysiologicalchangesarebeingmadebystents,withverylargeandhighlystatisticallysignificant.Asisoftenthecase,thenullhypothesisthatthesephysicalchangesshouldmakeabsolutelyzerodifferencetoanydownstreamclinicaloutcomesseemsfarfetched.Thus,thesensiblequestiontoaskis“Howlargearetheclinicaldifferencesobservedandaretheyworthit?”—not“Howsurprisingistheobservedmeandifferenceundera[spurious]nullhypothesis?”

4.Recommendationsforstatisticalreportingoftrials

Thesearchforbettermedicalcareisanincrementalprocess,withincompleteevidenceaccumulatingovertime.Thereisunfortunatelyafundamentalincompatibilitybetweenthatcoreideaandthecommonpractice,bothinmedicaljournalsandthenewsmedia,ofup-or-downreportingofindividualstudiesbasedonstatisticalsignificance.WeoffersomerecommendationstotacklethisissueinBox2.

Inthedesign,evaluation,andreportingofexperimentalstudies,thereisanormoffocusingonthestatisticalsignificanceofaprimaryoutcome—describedattimesas“significantitis”or“dichotomania”(Greenland,2017).Itleadstoanoverrelianceonphraseslike,“Wedeemedapvaluelessthan0.05tobesignificant,”thatarecommonthroughoutthepublishedliterature.Theresultingconclusionsfromsuchaprocessfrequentlywillbefragilebecausep-valuesareextremelynoisyunlesstheunderlyingeffectishuge.Totheircredit,theORBITAauthorsthemselveshaverecognizedthesecriticalissues(seeonline:https://twitter.com/ProfDFrancis/status/952008644018753536).

ORBITAwasnevermeanttobedefinitiveinabroadsense—itwasdesignedtofindaphysiologicaleffectofstentingonmeanexercisetime,withoutclarityontheclinicalrelevanceofthisoutcome.Indeed,alikelyreasonwhythestudywaslimitedtothisendpointwasbecausethisisallthatcouldhavepassedanethicalboardgiventhenoveltyoftheplaceboprocedureinthissetting.FurtherbackgroundonthesetopicsfromDarrelFrancis,theseniorauthoronthestudy,appearsatHarrell(2017b).OnecertainimpactofORBITAisthatbiggertrialsofstentingwithplaceboproceduresarenowmuchmorelikelywithamoremeaningfulsetofoutcomesthatwillbemeasured.

Wedon’tseeanyeasyanswershere—long-termoutcomeswouldrequirealong-termstudy,afterall,andclinicaldecisionsneedtobemaderightaway,everyday.But

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perhapswecanuseourexaminationofthisparticularstudyanditsreportingtosuggestpracticaldirectionsforimprovementinhearttreatmentstudiesandinthedesignandreportingofclinicaltrialsmoregenerally.

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References

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SupplementaryTable.Summarydatacomparingstentstoplacebo,fromTable3ofAl-Lameeetal.(2017).

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Box1.Usingthereporteddatasummariestoobtaintheanalysiscontrollingforthepre-treatmentmeasureForeachofthetreatmentandcontrolgroups,wearegiventhestandarddeviationofthepre-testmeasurements,thestandarddeviationofthepost-testmeasurements,andthestandarddeviationoftheirdifference,whichcanbeobtainedbytakingthewidthoftheconfidenceintervalforthedifference,dividingby4togetthestandarderrorofthedifference,andthenmultiplyingby 𝑛togetbacktothestandarddeviation.

Thenweusetherule,sd(y! − y!) = sd y! ! + sd y! !

− 2ρ sd(y!)sd(y!)andsolveforρ,thecorrelationbetweenbeforeandaftermeasurementswithineachgroup.Theresultinthiscaseisρ=0.88withineachgroup.Wethenconvertthecorrelationtoaregressioncoefficientofy!ony!usingthewell-knownformula,β = ρ sd(y!)/sd(y!),whichyieldsβ = 0.88forthetreatedandβ = 0.86forthecontrolgroup.Ifthesetwocoefficientsweremuchdifferentfromeachother,wemightwanttoconsideraninteractionmodel(Gelman,2004),butheretheyarecloseenoughthatwesimplytaketheiraverage.

Weusetheaverage,β=0.87,in(2)andgetanestimatefortheadjustedmeandifferenceof21.3(indeed,quiteabithigherthanthereporteddifferenceingainscoresof16.6)withastandarderrorof12.5(veryslightlylowerthan12.7,thestandarderrorofthedifferenceingainscores)and95%CI−3.2to45.8s.Theestimateisnotquitetwostandarderrorsawayfromzero:thez-scoreis1.7,andthep-valueis0.09.

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Box2.RecommendationsforAnalysesandReportingAnalyses1.Baselineadjustmentfordifferences:shouldbeprespecifiedfortheprimaryanalysiswherestrongconfounderssuchasabaselinemeasureoftheoutcomeareavailable.2.Beawareoffragilityofinferences.Fragilitycanbedemonstratedusingthesamplingorposteriordistributionasestimatedusingmathematicalmodeling,bootstrapsimulation,orBayesiananalysis.Reporting1.Avoiduseofsharpthresholdsforp-valuesandthuseliminatetheterm“statisticalsignificance”fromthereportingofresults.2.Considerthefullrange(upperandlowerends)ofintervalestimatesforimportantoutcomesandtheirpotentialinclusionofclinicallyimportantdifferences.3.Considerthepotentialforindividualvariabilityinresponses(heterogeneityoftreatmenteffects)andnotjustmeandifferences.