U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the...
-
Upload
jade-adams -
Category
Documents
-
view
227 -
download
0
Transcript of U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the...
![Page 1: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/1.jpg)
U.S. Department of the InteriorU.S. Geological Survey
The Biological Data Profile
Extending the FGDC Metadata Standard
Kirsten Larsen
![Page 2: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/2.jpg)
The Biological Data Profile
Lesson Goal: To be able to add the Biological Data Profile (BDP) elements within a metadata record Objectives:
1. Add BDP elements in Metavist 2. Retrieve taxonomic information from the
Integrated Taxonomic Information System (ITIS) 3. Find keywords using the Biocomplexity
Thesaurus
![Page 3: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/3.jpg)
Additional biological elements define: Taxonomy Methodology Analytical Tools
Document three types of data sets: Explicitly biological Biological and geospatial Explicitly geospatial
The Biological Data Profile
![Page 4: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/4.jpg)
Where are Biological Elements Added?
Section 1 Identification Information
Section 2 Data Quality Information
Section 6 Distribution Information
Section 9 Time Period Information
![Page 5: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/5.jpg)
![Page 6: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/6.jpg)
Identification Information (Section 1)Identification Information (Section 1)
1.5 Spatial Domain:1.5 Spatial Domain: BDP 1.5.1BDP 1.5.1 Description of Geographic Description of Geographic
Extent:Extent: Short description of the geographic aerial domain of Short description of the geographic aerial domain of
the data set. This is especially important when the the data set. This is especially important when the extent of the data set is not well described by the extent of the data set is not well described by the "Bounding Rectangle Coordinates"."Bounding Rectangle Coordinates".
BDP 5.2BDP 5.2 AltitudeAltitude Altitudinal domain of data setAltitudinal domain of data set
![Page 7: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/7.jpg)
BDP1.7 BDP1.7 Taxonomy(MA)Taxonomy(MA)
BDP1.7.1 BDP1.7.1 Taxon/Keywords (M)Taxon/Keywords (M)
BDP1.7.2BDP1.7.2 Taxonomic System (MA)Taxonomic System (MA)
BDP1.7.3BDP1.7.3 General Taxonomic Coverage (O)General Taxonomic Coverage (O) description of range of taxa…“all vascular plants were
identified to family or species, mosses and lichens were identified as moss or lichen”
BDP1.7.4BDP1.7.4 Taxonomic Classification (M)Taxonomic Classification (M)
![Page 8: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/8.jpg)
BDP.1.7.1 BDP.1.7.1 Keywords/Taxon (M)Keywords/Taxon (M)
Taxonomic Keyword ThesaurusTaxonomic Keyword Thesaurus (M)(M) Consider Biocomplexity ThesaurusConsider Biocomplexity Thesaurus
Taxonomic Keywords (M)Taxonomic Keywords (M) Domain: collection, multiple species, single Domain: collection, multiple species, single
species, amphibians, animals, bacteria, fungi, species, amphibians, animals, bacteria, fungi, invertebrates, lichens, mammals, mosses, plants, invertebrates, lichens, mammals, mosses, plants, protists, reptiles, vegetation, vertebrates, viruses, protists, reptiles, vegetation, vertebrates, viruses, free text.free text.
![Page 9: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/9.jpg)
BDP.1.7.2 BDP.1.7.2 Taxonomic System (MA)Taxonomic System (MA)
Classification System/Authority (M)Classification System/Authority (M)Citation Citation
ModificationsModifications
Identification Reference(MA)Identification Reference(MA)
CitationCitation
Identifier(O)Identifier(O)
ContactContact
![Page 10: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/10.jpg)
BDP.1.7.2 BDP.1.7.2 Taxonomic System (MA)Taxonomic System (MA)
Taxonomic Procedures (M)Taxonomic Procedures (M)
Taxonomic Completeness (MA)Taxonomic Completeness (MA)
Vouchers (MA)Vouchers (MA)
Specimen Type (M)Specimen Type (M)
Domain: herbarium specimens, blood samples, Domain: herbarium specimens, blood samples, photographs, free textphotographs, free text
Repository - Contact (M)Repository - Contact (M)
![Page 11: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/11.jpg)
BDP1.7.4BDP1.7.4 Taxonomic Classification (M)Taxonomic Classification (M)
Taxon Rank NameTaxon Rank Name
Taxon Rank ValueTaxon Rank Value
Applicable Common NameApplicable Common Name
Taxon Rank NameTaxon Rank Name
Taxon Rank ValueTaxon Rank Value
Applicable Common NameApplicable Common Name
Repeat as necessaryRepeat as necessary
![Page 12: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/12.jpg)
Tools Supporting the Biological Data Profile
To View BDPs: NPS Extension
To Create BDPs: TKME and Metavist support the BDP
TKME is available for download at http://geology.usgs.gov/tools/metadata/
Metavist can be ordered online at http://ncrs.fs.fed.us/pubs/viewpub.asp?key=2737
![Page 13: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/13.jpg)
BDP not supported in ArcCatalogBDP not supported in ArcCatalog NPS Metadata ExtensionNPS Metadata Extension
MP includes configuration file for parsingMP includes configuration file for parsing Adds FGDC NBII stylesheet for view BPD metadata Adds FGDC NBII stylesheet for view BPD metadata
recordsrecords
The Biological Data Profile
![Page 14: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/14.jpg)
Display Biological Data Display Biological Data Profile metadata records Profile metadata records using the FGDC NBII using the FGDC NBII stylesheetstylesheet
![Page 15: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/15.jpg)
Integrated Taxonomic Information System (ITIS)
Cooperative effort Standardized reference for scientific names
for plants and animals of North America. http://www.itis.usda.gov/
![Page 16: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/16.jpg)
Controlled Vocabularies – Keyword Controlled Vocabularies – Keyword ThesaurusThesaurusNBII Biocomplexity ThesaurusNBII Biocomplexity Thesaurus
ISO Topic CategoriesISO Topic Categories
Global Change Master Directory Keyword ListGlobal Change Master Directory Keyword List
AFSA Thesaurus – aquatic science and fisheriesAFSA Thesaurus – aquatic science and fisheries
CERES – integrated environmental thesaurusCERES – integrated environmental thesaurus
EnVoc – UN Environmental Information ExchangeEnVoc – UN Environmental Information Exchange
NBII recommends using the Biocomplexity NBII recommends using the Biocomplexity Thesaurus for biological metadata records.Thesaurus for biological metadata records.
![Page 17: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/17.jpg)
ExerciseExercise
1. Using the Web Browser on your 1. Using the Web Browser on your computer, go to:computer, go to: http://www.itis.usda.gov/http://www.itis.usda.gov/
Search for information on your favorite organism:Search for information on your favorite organism:
Scientific or Common NameScientific or Common Name
Appropriate KingdomAppropriate Kingdom
Click on the link under Search Results for details on Click on the link under Search Results for details on the Taxonomic Hierarchythe Taxonomic Hierarchy
2.2. Go to the NBII Biocomplexity Thesaurus site: Go to the NBII Biocomplexity Thesaurus site: http://thesaurus.nbii.gov/SearchNBIIThesaurus/http://thesaurus.nbii.gov/SearchNBIIThesaurus/
Find key words describing your organism or a Find key words describing your organism or a hypothetical biological datasethypothetical biological dataset
![Page 18: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/18.jpg)
Section 1Section 1 Section 1.5Section 1.5
BDP 1.5.1BDP 1.5.1
BDP 1.5.2.1-3BDP 1.5.2.1-3
![Page 19: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/19.jpg)
![Page 20: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/20.jpg)
![Page 21: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/21.jpg)
Now its your turn….
Enter the keywords from you NBII Biocomplexity Thesaurus search into Metavist
Use the information from your ITIS search to add taxonomic information in Metavist
![Page 22: U.S. Department of the Interior U.S. Geological Survey The Biological Data Profile Extending the FGDC Metadata Standard Kirsten Larsen.](https://reader035.fdocuments.net/reader035/viewer/2022062222/5697bfc21a28abf838ca4f96/html5/thumbnails/22.jpg)
Review Section 1 BDP Elements:
Spatial Extent Keywords Taxonomic Information
Tools supporting the BDP NPS extension TKME Metavist
Web Support ITIS NBII Biocomplexity Thesaurus