UAF/OSMC Presenters: Kevin O’Brien and Eugene Burger Abstract: Kevin O’Brien and Eugene Burger...
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Improving Data Catalogs Kevin O’Brien - University of Washington/JISAO, NOAA/PMEL Roland Schweitzer – Weathertop Consulting Eugene Burger – NOAA/PMEL
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Transcript of UAF/OSMC Presenters: Kevin O’Brien and Eugene Burger Abstract: Kevin O’Brien and Eugene Burger...
Improving Data Catalogs
Kevin O’Brien - University of Washington/JISAO, NOAA/PMEL
Roland Schweitzer – Weathertop Consulting
Eugene Burger – NOAA/PMEL
The Unified Access Framework (UAF)
• A Global Earth Observation Integrated Data Environment (GEO-IDE) project
• An attempt to improve scientific data management and access
• Focus on successes
Lots of data already available
Projects: (too many to name)
Dataformats:
netCDF GRIB ASCII
Applications: Matlab ArcGIS Ferret
GrADS Google Earth IDV LAS ERDDAP …
Users: (too many to name)
…
netCDF-CF-DAP-THREDDS-WMS
Developing the UAF Catalog Cleaner
(a ‘web crawler’)N
OM
ADS
UAF ‘RAW’ catalog
NOAA NOAA Affiliated
NMFSOAR NWS NESDIS
NO
DC
NG
DC
GFD
L
PMEL
AOM
LO
CO
PFEG
ND
BC
ESRL
Coas
twat
ch
IOOS National Partners
IOOS Regional Partners
NAV
O
AOO
S
NAN
OO
S
CEN
COO
S SCCO
OS
PACI
OO
SG
LOS
NER
ACO
OS
MAC
OO
RA SECO
ORA
CARI
COO
S GCO
OS
NO
MAD
S
UAF ‘CLEAN’ catalog
NOAA NOAA Affiliated
NMFSOAR NWS NESDIS
NO
DC
NG
DC
GFD
L
PMEL
AOM
LO
CO
PFEG
ND
BC
ESRL
Coas
twat
ch
IOOS National Partners
IOOS Regional Partners
NAV
O
AOO
S
NAN
OO
S
CEN
COO
S SCCO
OS
PACI
OO
SG
LOS
NER
ACO
OS
MAC
OO
RA SECO
ORA
CARI
COO
S GCO
OS
‘RAW’
‘CLEAN’
Tree Crawl Dataset Crawl Cleaner
CatalogRef and
Dataset URL’s
Raw catalog XML
Tree Crawl Dataset Crawl Cleaner
url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/OCEAN_GEOSTROPHIC_CURRENTS/CURRENTS.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/GLOBAL_MONTHLY_CARBON_FLUXES/FLUXES.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/GLOBAL_SEASON_CARBON_FLUXES/FLUXES.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/ROMSMETEO/kk1.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/MCI_GULF/kk1.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/MSGSST/SST.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/TERRA_K490_GULF/terrak490.nc"url="http://cwcgom.aoml.noaa.gov/thredds/dodsC/TERRA_K490_GULF_3D/terrak490.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.199910.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.199911.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.199912.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200001.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200002.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200003.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200004.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200005.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200006.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200007.nc"url="http://www.esrl.noaa.gov/psd/thredds/dodsC/Datasets/NARR.dailyavgs/subsurface/soill.200008.nc".
CatalogRef and
Dataset URL’s
Tree Crawl Dataset Crawl Cleaner
Aggregations
CF complianc
e
Access services
UAF Clean Catalog
UAF Clean Catalog
How to provide feedback to data providers?
•Remember the “Building on Success” theme
• ncISO metadata assessment tool is very successful
How about a catalog quality assessment tool?
How to provide feedback to data providers?
•Remember the “Building on Success” theme
• ncISO metadata assessment tool is very successful
Statistics for current catalog and all it’s children
Links to rubric reports for child catalogs
Missing services
Data issues
url url
url
url url
url
url url
Data issues
Original Catalog
1. Crawl a collection of catalogs and find all of the OPeNDAP end points.
2. Examine each end point and determine if it has gridded CF compliant netCDF data.
The catalog cleaner can...
1. Report problems:a. No grids found that follow CFb. Unordered time axisc. Data access errors (underlying files missing, mis-
configured gateways, etc.)2. Detect unaggregated time series data3. Detect missing services
The catalog cleaner can...
1. Write a new catalog with remote links to the data and with local versions of missing services.
The catalog cleaner can...
but shouldn’t…
1. Construct an aggregation to run locally accessing remote data via OPeNDAP.
The catalog cleaner can…
1. Unacceptably poor data access performance.
2. No access to the local file system, so it cannot make a catalog that would aggregate the files via configuration pointing to the local file system.
Why not...
1. Use a modified version of the tool to assess the quality of a local catalog.
IE: CatalogCleaner CatalogEvaluator
2. Do the (not difficult) work locally to aggregate files where appropriate and turn on missing services.
What to do...
Moving Forward….
• Welcome feedback on rubric and Catalog Cleaner tool
• Evolution of tool to an evaluation tool
• UAF master catalog to go beyond gridded files• Use ERDDAP to including In Situ featureTypes• Building support for visualization of these in LAS
• Continue community outreach to improve catalogs
Thank you!UAF: geo-ide.noaa.govCatalog Cleaner code and documentation:
http://ferret.pmel.noaa.gov/LAS/documentation/the-uaf-catalog-cleaner/ERDDAP: upwell.pfeg.noaa.gov/erddapTHREDDS: www.unidata.ucar.edu/projects/THREDDSnetCDF: www.unidata.ucar.edu/netcdfOPeNDAP: www.opendap.orgCF: cf-pcmdi.llnl.gov
