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NATURAL TRANSFORMATION OF AGGREGATIBACTER ACTINOMYCTEMCOMITANS WITH GENOMIC AND PLASMID DNA PRESENT
IN MICRO VESICLES SECRETED BY DONOR CELLS
A thesis submitted by
Riddhika Pandya Graduate Student
M.Sc. Pharmacology & Toxicology
Guided By Dr. Mrinal K. Bhattacharjee
GENRAL INTRODUCTION OF ACTINOBACILLUS
ACTINOMYCETEMCOMITANS
AIM OF THE STUDY
BACTERIAL STRAINS USED AND METHODS
RESULTS
DISCUSSION
IMPORTANCE OF PROJECT
FUTURE APPLICATIONS
INDEX:
Actinobacillus Actinomycetemcomitans
• A.actinomycetemcomitans is gram negative facultative anaerobe , non-motile
cocobacillus and a member of pasteurellacea. Family. It is major causative
agent of Localized aggressive periodontitis.
• Apart from being a major periodontal pathogen, evidences of the presence of
their genomic DNA in lower respiratory tract, meninges of CNS and urinary
tract suggest that they are also non oral pathogens.
• A.a. is predisposing factor for several other major diseases like atherosclerosis
and related conditions of coronary artery disease, stroke, diabetes and
pregnancy complications, abscesses, meningitis, pneumonia, septicemia, UTI &
osteomyelitis.
In united states, periodontitis Affects 14% of adults aged 45-54, 23% of
those aged 65-74. Mean prevalence was 0.53% among adolescents of all
racial origins , and A.a. was isolated in 97% of those cases .
Adolescents of African-American descent were found to have a 15- fold
higher incidence of diseases than Caucasian Americans.
Very few research that support genetic predisposition to Localized
aggressive periodontitis.
Distribution:
Fresh clinical isolates of A.a. produce rough, star positive colonies on plates.
Cells adhere to each other and to solid surface.
Smooth colonies grow as more opaque, glistering, circular colonies with regular borders .
Natural conversion of rough to smooth has been observed.
Phenotypes:
A. a. s is one of the most powerful periodontal pathogen. It is naturally found in dental plaque, periodontal pockets and gingival sulcus. It is also present in periodontal pocket disease.
Extra-oral pathologies includes, preterm low birth weight, atherosclerosis, plaque buildup in the arteries, which creates greater risk of stroke and heart attack.
It also plays important role in accumulation of cholesterol in blood stream with a support of macrophage derived foam cells. Thus, contribute role in formation of atheroma.
Oral and Extra-oral Pathology:
0.6% of infective endocarditis are caused by A.a.
A.a. is a member of clinically important HACEK group. ( Haemophilus aphrophilus, A.a., cardiobacterium ominis, Eikenella corrodense, Kingella Kinge) .
This group of bacteria causes inflammation of heart valves .
Studies show that infection by these bacteria may impact the effectiveness of some medicines which are used to prevent heart attacks.
Continue....
Mechanism of pathogenicity:
One of the best studied virulence factor of A. a. is Leukotoxin ( a 14 kDa secreted lipoprotein that belongs to RTX family.
leukotoxin has been shown to kill polymorphonuclear leucocytes and macrophages .
Other ill defined virulence proteins of A. a. are
# Thioredoxins that inhibit lymphokine production.
# An unidentified supra antigen which cause T- cell apoptosis.
# Cytolethal distending toxin ( Cdt A, B, and C) causes arrest of cell
growth in G2 phase.
Virulence factors of A. a.
Natural gene transfer or DNA translocation occur during several important biological processes, such as
- infection by bacteriophages, conjugative DNA transfer of plasmids, T- DNA transfer and natural genetic transformation.
Natural Methods of gene transfer observed in A. a.
General mechanism of Natural transformation
Development of competence
Binding of DNA to the cell surface
Processing and Uptake of DNA into cell
Incorporation of DNA into host genome via homologous recombination.
Natural transformation of A. a. appears to be strain specific and is of too low frequency to be useful in genetic studies.
Requirements for natural transformation:
# Presence of 9-bp uptake signal sequences in incoming DNA
# expression of tfox gene to activate genes of competence
# Induction of genes of competence
Similar features were observed in another gram negative bacteriaum H.influezae.
Continue…..
• Induction of competence in A.a. requires the product of tfoX (sxy) gene
• Tfox protein itself does not bind to DNA but interacts with CRP(CAP)
• Turn on the genes of the competence regulon
• Thus expression of tfoX makes A.a. cell constitutively competent
Development of Competence and role of Tfox gene
USSs are believed to be genomic identity tags
A.a. seems to take up their own DNA preferentially
This specificity arises from presence of USSs .
Numerous copies of USSs found in genome of A.a.
Cell surface proteins or transporters that bind the USS have not yet been identified
USS are often found in inverted-repeat pairs downstream from coding region.
Significance of USS in natural transformation
Need for natural transformation
The lack of genetic tools
Scarcity of standard and biological techniques which work well on A.a. Preference to take DNA containing sequences which are present frequently
in its own genome. Lack of treatments which permanently cure LAP by A.a.
The objective of this study is to demonstrate a novel mechanism of natural transformation of A . a. with genomic and plasmid DNA present in micro vesicles secreted by donor cells in growth medium.
To demonstrate that A. a. can be naturally transformed by this method, both in the presence or absence of Uptake signal sequences (USS) or Tfox gene.
Aim of the study:
Strains used: Recepient strains of A. Actinomycetemcomitans
Materials and Methods Recipient strains of A. a.
Formal name of
strains
LIU names serotype
Reference/Source
DF2200Nal LIU 1235 A David Figurski, Columbia
University
NJ1000Nal LIU 1195 B Dan Fine, UMDNJ
NJ 2700Nal LIU 1196 C Dan Fine, UMDNJ
IDH781Nal LIU 1231 D Dan Fine, UMDNJ
NJ9500Nal LIU 1201 E Dan Fine, UMDNJ
NJ9100Nal LIU 1193 F Dan Fine, UMDNJ
CU1000Nal LIU 1188 F David Figurski, Columbia
University
All donor strains were catalase negative. pJAK 17 is a derivative of the broad host range plasmid RSF1010. pMB40 contains a two copies of USS cloned into pJAK13, a similar
derivative of RSF1010 . E.coli strain used:
LIU 4 (MV10Nal)
Donor strains of A.a.
Name of strains Formal names Source/ Reference
LIU 1121 Y4Nal::katAIS903фKan Thomson et. al.1999
LIU 1212 Y4NalTn::katA(pJAK 17) pJAK 17 mobilized from E.coli into LIU1121
LIU 1223 Y4nalTn::Kat(pMB 40) pMB40 mobilized from E.coli into Liu 1121
Transformation with genomic donor DNA containing kanamycin resistance marker present in vesicles in the growth medium of donor stains
Set 1:
TRANSFORMATION ASSAY : 1
culture tubes
Incubation for different length
of time
Set 2: recipient cells were resuspended in 2.5 ml of donor DNA instead of 100 µl.
Continue…..
Transformation with plasmid DNA with and without USS present in growth medium of donor strains LIU 1212 and LIU 1223 respectively.
4 steps were as above.
Transformation Assay : 2
Resuspended cells with growth medium 200 µl of
LIU 1212
Incubation
Km(40) Cm(2)
Resuspended cells with growth medium 200 µl
of LIU 1223
Incubation
Km(40)
Sp(20)
Transformation Assay : 3
LIU 4
Resuspended cells with growth medium 200 µl of LIU 1212
Transformation of E.coli
Nal(20) Km(50)
Nal(20Cm(50)
Nal(20)Km(50)
Nal(20) Sp(50)
Resuspended cells with growth medium 200 µl of LIU 1223
Transformation assay 4
Transformation with heated growth medium
Transformation assay 5
Transformation with frozen supernatant
Individual colonies of transformant were picked with tooth pick without
touching the plate surface and dipped into eppendorf tube containing 1 ml
of 3% hydrogen peroxide
Catalase test
Number of transformants
Fresh donor growth medium Frozen/thawed donor growth medium
Growth medium volume Growth medium volume
0.1 ml 2.5 ml 0.1 ml 2.5 ml
Recipient
Strains
Serotype Incubation time Incubation time Incubation time Incubation time
2h 3h 5h 2h 3h 5h 2h 3h 5h 2h 3h 5h
1235 A 457 388 299 389 401 403 425 478 489 378 425 467
1195 B 1377 1490 1234 989 1189 1478 1340 1456 990 1290 1329 1365
1196 C 299 320 345 345 377 389 297 329 453 357 430 298
1231 D 378 344 390 289 385 489 408 369 478 376 402 389
1201 E 109 98 110 145 134 129 123 112 97 104 132 116
1193 F 119 128 113 145 90 138 97 156 123 154 145 134
1188 F 109 145 93 94 119 137 118 132 98 156 114 123
Results Transformation assay 1 and 2
Gel electrophoresis:
PMB 78 positive control
A.a. transformant
Recipient
strains
Serotype
Transformants/ml
(kanamycin
resistant)
Transformants/
ml
(spectinomycin
resistant)
LIU 1235 A 154 + 34 47 + 16
LIU1195 B 206 + 29 123 + 45
LIU1196 C 173 + 21 78 + 13
LIU 1231 D Smooth 139 +
13
Rough 176 +
19.5
39 + 2
LIU 1201 E 189 + 18 98 + 19
LIU1193 F 142 + 24 56 + 9
LIU 1188 F 154 + 9 67 + 4
Transformation assay 2
Gel electrophoresis
pMB40 positive control
A.a. transformants
Recipient strains
Serotype Transformants/ml (kanamycin resistant)
Transformants/ml
(chloramphenicol resistant )
LIU 1235 A 201 + 14 45 + 5
LIU1195 B 270 + 37 17 + 9
LIU1196 C 145 + 12 34 + 7
LIU 1231 D Smooth 34 + 4
Rough 103 + 6
11 + 3
LIU 1201 E 245 + 45 82 + 21
LIU1193 F 305 + 19 78 + 15
LIU 1188 F 197 + 34 46 + 13
Transformation assay 3
Gel electrophoresis
PJAK 17 positive control
A.a. transformants
Recipient strain
Transformants/ml (kanamycin resistant)
Transformants/ml (chloramphenicol
resistant )
LIU 4 1077 + 45 1014 + 65
Transformation assay 4
With LIU 1212 spent medium
With LIU 1223 spent medium
Recipient strain
Transformants/ml (kanamycin resistant)
Transformants/ml (spectinomycin
resistant)
LIU 4 1538 + 78 962 + 92
Gel electrophoresis of genomic DNA transformants
pMB 79 positive control
E.coli genomic
DNA transformants
Gel electrophoresis of plasmid DNA transformants with USS
E.coli plasmid DNA
transformants
pMB 40 positive control
Gel electrophoresis of plasmid DNA transformants without USS
pJAK 17 positive control
E.coli plasmid DNA transformants
Transformation assay 5
Preliminary studies show that mechanism of natural transformation in A. a. is dependent on expression of tfox gene and presence of USS and development of competence.
A novel method of natural transformation is independent of both TfoX and USS.
The possible explanation for this behavior is that bacteria may undergo process of adhesion and fusion with outer membrane of recipient strain of A. a. whereby the DNA can be delivered inside the recipient cytoplasm.
The donor DNA then undergoes a homologous recombination with the resident genomic DNA of the recipient cell resulting in allelic exchange.
Discussion
A. a. can be transformed with genomic as well as plasmid DNA with or without USS present in the growth medium of donor cells.
Hypothetical mechanism for this transformation is that the DNA containing donor micro vesicles of A.a. in medium had interaction with recipient bacteria through fusion or adhesion mechanisms.
It was seen that all the six serotypes of A. a. were naturally transformable. A better method than the TfoX dependent method which does not work for F
serotype A. a. Transformation of E. coli with DNA from donor A. a. cells suggest the
possibility of interspecies transfer of genetic material by this method. This method is a much easier method than the conventional method of using
isolated pure DNA. As high transformation frequency was achieved using growth medium as a
source of DNA.
Continue….
Heating or freezing of growth medium does not affect transformation efficacy suggesting that the DNA secreted into the growth medium is protected in micro vesicle made up of some structure that is resistant to heating and freezing.
DNA present in growth medium of A. a. can also be used to transform other species of bacteria.
The bacterium takes in DNA at a rate that is independent of the total amount of DNA present in the growth medium. (Why???)
Continue….
Provide focus on presence of DNA in membrane vesicle released by A.a. in growth medium during their growth.
Shows the possibility of involvement of DNA in pathogenesis of LAP by A.a.
Importance of project
Provide good genetic tool to study A.a. genome over the present standard molecular and biological techniques.
Synthetic proteoliposomes have been developed to deliver drugs to tumors and specific tissues, although off-target effects are a continuous problem. Making use this adherence and entry mechanism that target native outer membrane vesicle to host cells could improve the specific targeting of engineered therapeutic liposomes for LAP.
Future applications