The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie...
-
Upload
rosemary-mccormack -
Category
Documents
-
view
219 -
download
0
Transcript of The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie...
![Page 1: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/1.jpg)
The DNA Bank Network
Gabriele Droege
Botanic Garden and Botanical Museum Berlin-Dahlem
Freie Universität Berlin
![Page 2: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/2.jpg)
Existing components
Source material / specimens
![Page 3: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/3.jpg)
GBIF – Data Architecture
![Page 4: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/4.jpg)
GBIF – Data Architecture
DiGIR = Digital Generic Information Retrieval
BioCASe = Biological Collection Access Service
ABCD = Access to Biological Collection Data
WrappersTransformation of individual database structures into a standard xml schema
Enable „live“ connection to original data provider
DarwinCore ABCD
![Page 5: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/5.jpg)
DNA Bank Network
The Data Architecture
![Page 6: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/6.jpg)
Provider xy
Different voucher data sources
DiGIR/BioCASe
DarwinCore/ABCD
Specimen
databases
Data Architecture
![Page 7: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/7.jpg)
Data architecture – DNA data
• DNA Module– MySQL and PHP– Local use or with external server (web-based)– Several tools for entry and management of DNA data
and customer requests– Reference to specimen data via wrappers– Specimen Tool for specimen data not available via
GBIF
![Page 8: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/8.jpg)
![Page 9: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/9.jpg)
![Page 10: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/10.jpg)
![Page 11: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/11.jpg)
Provider xy
DNA ModuleDNA
Different voucher data sources
DiGIR/BioCASe
DarwinCore/ABCD
Specimen
databases
Data Architecture
![Page 12: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/12.jpg)
Provider xy
BioCASe
ABCDDNA
DNA ModuleDNA
Different voucher data sources
DiGIR/BioCASe
DarwinCore/ABCD
Specimen
databases
Data Architecture
Web index/
Web portal
www.dnabank-network.org
![Page 13: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/13.jpg)
www.dnabank-network.org
- Dynamically generated during web query aggregating data from multiple sources
- April 2012: > 42.000 DNA and tissue samples available
- Customers have to sign MTA
- Partners work independent
![Page 14: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/14.jpg)
DNA Bank Network
The Future
![Page 15: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/15.jpg)
GBIF records worldwide
311,209,813 georeferenced data
![Page 16: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/16.jpg)
GBIF records of current GGBN partners
9,299,217 georeferenced data
![Page 17: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/17.jpg)
Sustainability
• Use of existing systems (e.g. GBIF, GenBank, BOLD, CoL)
• BGBM: two new permanent positions (from July 2012) – BioCASe & ABCD - Jörg Holetschek– DNA Bank Network - Gabi Dröge technical support for future GGBN data portal
possible• DFG proposal (deadline 31. July 2012); DFG =
Deutsche Forschungsgemeinschaft (German Research Foundation)
![Page 18: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/18.jpg)
DFG proposal
• DFG = Deutsche Forschungsgemeinschaft (German Research Foundation)
• Programme: Knowledge Transfer Projects– Deadline: 31. July 2012– Transfer projects are based on results generated by DFG-
funded research projects– Core of the project is a joint work programme, focusing
on intensive mutual exchange of scientific knowledge– Funds for German partner only– Appropriate input by the application partner expected– Should be not more than one application partner
• Discussion with GGBN-ISC and TF Data Standards
![Page 19: The DNA Bank Network Gabriele Droege Botanic Garden and Botanical Museum Berlin-Dahlem Freie Universität Berlin.](https://reader035.fdocuments.net/reader035/viewer/2022062423/56649cb05503460f94975289/html5/thumbnails/19.jpg)
DFG proposal
• Working title:“Building the technical node of the Global Genome Biodiversity Network (GGBN)”
• SI represents GGBN within the project• BGBM leads the technical node of GGBN• All GGBN partners could benefit:
–Best practices and data workflows can be adopted by all GGBN partners
• GGBN works independent and does not depend on the grant and vice versa