Sharing Lab Exercises and Ideas in Biochemistry & Molecular Biology Teaching
Teaching molecular structure using Jmol
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Transcript of Teaching molecular structure using Jmol
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Teaching molecular structure using Jmol
Robert M. Hanson
Department of Chemistry, St. Olaf College
Northfield, MN 55057
August 19, 2009
238th ACS National Meeting
Washington, DC
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The Jmol Project
• Jmol molecular visualization project• Open-source• Jmol.sourceforge.net• Active user/developer community
about 400 “users”
about 150 “developers”
collectively 23,000 list messages
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The Jmol Community
• Professional graphics designers• Professional developers• Professors, graduate students, undergraduates
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The Jmol Community
• Generally one of three focal points:
– Research– Publishing– Education
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The Jmol Community
• Generally one of three focal points:
– Research• Computational chemistry visualization• Structural biology• Electron microscopy/X-ray crystallography
– Publishing– Education
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JR Schmidt, U. Wisconsin “WebMO” http://www.webmo.net/
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Peter Rose, RCSB http://www.rcsb.org/pdb/explore/jmol.do?structureId=1LDN
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Peter Rose, RCSB http://www.rcsb.org/pdb/explore/jmol.do?structureId=1LDN
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Patrick Carroll, U. Penn. http://macxray.chem.upenn.edu/
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The Jmol Community
• Generally one of three focal points:
– Research– Publishing
• Interactive website content• Professional graphics design• Database front ends
– Education
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Frieda Reichsman, http://pubs.acs.org/doi/media/10.1021/cb600303y/figure2.htm
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Tim Driscoll MolVis http://molvis.sdsc.edu/fgij/fg.htm?mol=1ldn
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Alan Hewat, http://icsd.fiz-karlsruhe.de/icsd/
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Alan Hewat, http://icsd.fiz-karlsruhe.de/icsd/
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The Jmol Community
• Generally one of three focal points:
– Research– Publishing– Education
• High School• General chemistry• Organic chemistry• Biochemistry• Inorganic chemistry• Computational chemistry
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The Molecular Workbench
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The Molecular Workbench
Charles Xie, Concord Consortium http://mw.concord.org/modeler/
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Molecular Symmetry
Dean Johnston, Otterbein College, http://symmetry.otterbein.edu/
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Bob Hanson, http://www.stolaf.edu/depts/chemistry/mo/struc/explore.htm
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Bob Hanson, http://www.stolaf.edu/depts/chemistry/mo/struc/explore.htm
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Bob Hanson, http://www.stolaf.edu/depts/chemistry/mo/struc/explore.htm
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Bob Hanson, http://www.stolaf.edu/depts/chemistry/mo/struc/explore.htm
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CoolMolecules
Bob Hanson, http://www.stolaf.edu/depts/chemistry/mo/struc/explore.htm
Mike McGuan Melanie Casavant
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