Taxonomic Revision of Altermonas George M. Garrity (Adapted by J Kennedy) For further information...
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Transcript of Taxonomic Revision of Altermonas George M. Garrity (Adapted by J Kennedy) For further information...
Taxonomic Revision of Altermonas
George M. Garrity(Adapted by J Kennedy)
For further information contact [email protected]
macleodii(T)
communis
Alteromonas
1972
vaga
communisvagahaloplanktis
Alteromonasmacleodii(T)
1972 1973
communisvagahaloplanktisrubra
Alteromonas
1972 1973 1976
macleodii(T)
communisvagahaloplanktisrubracitrea
Alteromonas
1972 1973 1976 1977
macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundina
Alteromonas
1972 1973 1976 1977 1978
macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundinaaurantia
Alteromonas
1972 1973 1976 1977 1978 1979
macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedai
Alteromonas
1972 1973 1976 1977 1978 1979 1981
macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceae
Alteromonas
1972 1973 1976 1977 1978 1979 1981 1982
macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceae
vagacommunis(T)
Marinomonas Alteromonas
commune
vagum
1972 1973 1976 1977 1978 1979 1981 1982 1984
multiglobiferum
japonicumminutiumbiejerinckiimaris
maris
hiroshimense
pelagicumpusillum
jannaschiikreigii
Oceanosprillum
mariswilliamsae
linum(T) macleodii(T)
Nomenclatural issuesHomotypic synonymyPriorityRule 37(a) 1
Data issuesOne to many relationship
Taxonomic issueWhich one is right?
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedai
vaga benthicahanedai
Marinomonas Alteromonasputrifaciens(T)
Shewanella
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagum
Oceanosprillum
mariswilliamsae
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986
luteoviolaceae
communis(T)linum(T) macleodii(T)
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987
communisvagahaloplanktisrubracitreaesperjianaundinaaurantia
hanedailuteoviolaceaedenitrificans
vaga benthicahanedai
Marinomonas Alteromonas Shewanella
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagum
Oceanosprillum
mariswilliamsae
putrifaciens
putrifaciens(T)communis(T)linum(T) macleodii(T)
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
vaga benthicahanedai
Marinomonas Alteromonas Shewanella
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagum
Oceanosprillum
mariswilliamsae
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988
colwelliana
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedai
Marinomonas Shewanella
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonis
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990
colwelliana
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
putrifaciens(T)communis(T)linum(T) macleodii(T)
Nomenclatural issueNon-type strains
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktis
putrifacienshanedai
denitrificans
rubracitreaesperjianaundinaaurantia
luteoviolaceae
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
putrifaciens(T)communis(T)linum(T) macleodii(T)
Nomenclatural issuesHeterotypic synonymy
Data issueMany to many relationship
Taxonomic issueWhich one is right?
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktis
putrifacienshanedai
denitrificans
rubracitreaesperjianaundinaaurantia
luteoviolaceae
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubra
haloplanktishaloplanktis(T)
Pseudoalteromonas
undina
haloplanktistetradonis
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubra
Pseudoalteromonas
undinaantartica
elyakoviii
haloplanktistetradonis
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubra
Pseudoalteromonas
undinaantartica
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolacea
bacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolytica
haloplanktistetradonis
mediterannea
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000 2001
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubra
Pseudoalteromonas
undinaantartica
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolacea
bacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolyticatetrodonis
japonica
haloplanktistetradonis
mediterannea
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000 2001 2002
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
Pseudoalteromonas
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolaceajaponicadenitrificanslivingstonensisalleyanna
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubraundinaantarticabacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolyticatetrodonis
haloplanktistetradonis
mediterannea
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000 2001 2002 2004
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
Pseudoalteromonas
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolaceajaponicadenitrificanslivingstonensisalleyanna
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubraundinaantarticabacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolyticatetrodonis
haloplanktistetradonis
12 others
mariniintestinasaireschlegelianagaetbuli
mediteranneaprimoryensis
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
stellipolarislitorea 5 others
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000 2001 2002 2004 2005
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
Pseudoalteromonas
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolaceajaponicadenitrificanslivingstonensisalleyanna
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubraundinaantarticabacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolyticatetrodonis
haloplanktistetradonis
14 others
mariniintestinasaireschlegelianagaetbuli
mediteranneaprimoryensis
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
stellipolarislitorea 8 others2 others
vaga benthicahanedaicolwellianaalgae
Marinomonas Shewanella
communisvagahaloplanktisrubracitreaesperjianaundinaaurantiaputrifacienshanedailuteoviolaceaedenitrificans
tetradonisatlanticacarageenovora
Alteromonas
colwelliana
1972 1973 1976 1977 1978 1979 1981 1982 1984 1986 1987 1988 1990 1992 1995 1997 2000 2001 2002 2004 2005 2006
japonicumminutiumbiejerinckiimaris
maris
hiroshimensemultiglobiferumpelagicumpusillumcommunejannaschiikreigiivagumbiejerinckiipelagicummaris
hiroshimense
Oceanosprillum
mariswilliamsae
distinctafuliginea
Pseudoalteromonas
elyakoviii
fridgidimarinageldimarinawoodyiiamazonensisbalticaoneidensispealeanaviolaceajaponicadenitrificanslivingstonensisalleyanna
atlanticaaurantiacarrageenovoracitreaesperjianaluteoviolaceanigrifacienspisicidarubraundinaantarticabacteriolyticaprydzensistunicatadistinctaelyakoviipeptidolyticatetrodonis
haloplanktistetradonis
14 others
mariniintestinasaireschlegelianagaetbuli
mediteranneaprimoryensis
haloplanktishaloplanktis(T)
putrifaciens(T)communis(T)linum(T) macleodii(T)
stellipolarislitorea 13 others2 others
Alteromonas
Alteromonadacea
Alteromonadales
Gammaproteobacteria
Alishewanella
Aestuariibacter
FerrimonasColwellia
Idiomarina
Glaciecola
Marinobacterium
Marinobacter
Pseudoalteromonas
Microbulbifer
Incertae sedis
Psychromonas
Teredinibacter
Shewanella
Thalassomonas
Ferrimonadacea
Idiomarinaceae
Moritella
Moritellaceae
Pseudoalteromonadaceae
Ferrimonas
Idiomarina
Pseudoalteromonas
Psychromonadaceae
Algicola
Psychromonas
Moritella
Shewanellaceae Shewanella
Incertae sedis
Teredinibacter
Agarvorans
Alishewanella
Marinobacterium
Marinobacter
Microbulbifer
Salinomonas
Colwelliaceae
Colwelliaceae
Thalassomonas
May 2004 November 2004
At the species level 18 “emendations”
21 new species19 species reassigned to 4 genera
3 new combinations6 synonyms 2 species to subspecies2 subspecies to species
50 names, five genera, five families, and two classes but….only 5 validly published species.
At the higher level1 Family 16 genera -> 8 families 12 genera
1 unclassified genus -> 7 unclassified generaWhich is correct?
Which is supported by the data?What is the impact on MIGS?