Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry •...

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Introduction to: Introduction to: Polymerase Polymerase Chain Chain Reaction & Reaction & TaqMan TaqMan Real Time PCR Real Time PCR

Transcript of Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry •...

Page 1: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Introduction to:Introduction to:PolymerasePolymerase Chain Chain

Reaction & Reaction & TaqManTaqMan Real Time PCRReal Time PCR

Page 2: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

PCRPCR PolymerasePolymerase Chain Reaction (1)Chain Reaction (1)

95 °C

45-65 °C 72 °C

Page 3: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

PCR PCR Exponential amplificationExponential amplification

25 cycles

225 copies(1,073,741,824)

Page 4: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

PCR PCR Exponential amplificationExponential amplification

end point

real time

Page 5: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Characteristic Amplification CurvesCharacteristic Amplification Curvesusing five quantitation standardsusing five quantitation standards

Delta Rn

Delta Delta RnRn: : Fluorescence intensity divided by theFluorescence intensity divided by the background background signal signal NTCNTC: : nonnon--template controltemplate control..

Page 6: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’
Page 7: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’
Page 8: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 9: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 10: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 11: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 12: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 13: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 14: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 15: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

• Polymerization•• PolymerizationPolymerization

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Page 16: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

. Strand displacement. . Strand displacementStrand displacement R = Reporter

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reverseprimer

QRR QQ

Page 17: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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. Cleavage. . CleavageCleavage

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Page 18: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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Page 19: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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Page 20: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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Page 21: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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Polymerization completedPolymerization completedPolymerization completed.

Page 22: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

Polymerization completedPolymerization completedPolymerization completed.

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Taqman PCR ChemistryTaqman PCR ChemistryTaqman PCR Chemistry

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Page 23: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR® green chemistry

Double stranded DNA Double stranded DNA Binding DyeBinding Dye

Page 24: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Primer

SYBR Green

template

Taq Polymerase

Page 25: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Page 26: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Page 27: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Page 28: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Page 29: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

SYBR Green detectionSYBR Green detection

Page 30: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

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Page 31: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

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Page 33: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

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Page 37: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

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Page 39: Taqman PCR Chemistry - Assiut University PCR/Taqman PCR Chemistry2.pdf · Taqman PCR Chemistry • Polymerization. R Denaturation Annealing. R = Reporter Q = Quencher QQ. 5’ 5’

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