Synthesis of five-MemberedConformationally Locked 2´,4´-Carbocyclic ribo - Thimidine.

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Synthesis of five-MemberedConformationally Locked 2´,4´-Carbocyclic ribo- Thimidine. Khobragade Premkumar Anandrao Chembiotek, Hinjewadi, Pune

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Synthesis of five-MemberedConformationally Locked 2´,4´-Carbocyclic ribo - Thimidine. Khobragade Premkumar Anandrao Chembiotek, Hinjewadi, Pune. Antisense therapeutic agent. 65%. 95%. Reagents and conditions: Acetone, sulphuric acid, rt, overnight. - PowerPoint PPT Presentation

Transcript of Synthesis of five-MemberedConformationally Locked 2´,4´-Carbocyclic ribo - Thimidine.

Page 1: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

Synthesis of five-MemberedConformationally Locked 2´,4´-Carbocyclic ribo- Thimidine.

Khobragade Premkumar AnandraoChembiotek, Hinjewadi, Pune

Page 2: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

ON

NH

O

O

O

DMTrO

PN

O CN

Antisense therapeutic agent.

Page 3: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

Reagents and conditions:

(i) Acetone, sulphuric acid, rt, overnight.(ii) Oxalyl chloride, DMSO, , -78 °C, DIPEA, DCM .

O

O

O

O

O

O

D-Glucose

O

O

O

O

O

OHi) ii)

95% 65%

Page 4: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

O

O

O

i)O

O

O

O

O

OH

ii)O

O

O

O

O

BnO62% 75%

Reagents and conditions:

(i) Sodium Borohydride, EtOH, rt, 2 hr, (ii) NaH, BnBr, -5 °C to rt overnight.

Page 5: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

O

O

BnO

O

O

O

OH

OH

BnO

O

O

O

BnO

HO

i) ii)

65%

Reagents and conditions:

(i) 80% AcOH, rt, overnight, (ii) Sodium metaperiodate, THF, Water, rt, 4 hr.

Page 6: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

BnO

HO

O

O

O

BnOOH

OHO

O

O

BnOOH

BnOi) ii)

Reagents and conditions:

(i) NaOH, formalin, rt, overnight; (ii) NaH, BnBr, -5 °C to rt, 4 hr.

63% 66%

Page 7: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

BnOOH

BnOO

O

O

BnOO

BnOO

O

O

BnO

BnOi) ii)

Reagents and conditions:

(i) Oxalyl chloride, DMSO, -78 °C, DIPEA, DCM,(ii) PPh3+CH3Br-, 1.6 M butyllithium in hexane, THF, -78 °C to rt overnight.

87%

Page 8: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

BnO

BnOO

O

O

BnO

BnO

OH

O

O

O

BnO

BnOi) ii)

Reagents and conditions:80%

(i) 9-BBN, THF, 3 N NaOH, 33% H2O2,(ii) Oxalyl chloride, DMSO, -78 °C, DIPEA, DCM, PPh 3+CH3Br-, 1.6 M butyllithium in hexane, THF, -78 °C to rt overnight.

95% 70%

Page 9: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

O

O

BnO

BnOO

OAc

OAc

BnO

BnOO

OAcBnO

BnO N

NH

O

Oi) ii)

Reagents and conditions:

(i) Acetic acid, acetic anhydride, triflic acid, rt, 30 min. (ii) persilylated thymine, TMSOTf, CH3CN, 0 °C to rt, overnight.

80%

Page 10: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

OAcBnO

BnO N

NH

O

OO

BnO

BnO N

NH

O

O

OH

O

OCSOPhBnO

BnO N

NH

O

Oi) ii)

Reagents and conditions:

(i) 27% methanolic NH3,rt, overnight,(ii) DMAP, phenyl chlorothionoformate, pyridine,rt, overnight.

72%

Page 11: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

O

OCSOPhBnO

BnO N

NH

O

OO

BnO N

NH

O

O

OBn

ON

NH

O

O

OH

OHi) ii)

Reagents and conditions:

(i) Bu3SnH, toluene, AIBN, 4 h,(ii) 20% Pd(OH)2/ C, Ammonium Formate, Methanol, Reflux, 8 h.

73% 76%

Page 12: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

ON

NH

O

ODMTrO

OH

ON

NH

O

O

O

DMTrO

PN

O CN

i) ii)ON

NH

O

O

OH

OH

Reagents and conditions:

(i) DMTr-Cl, Pyridine, Overnight,(ii) 2-cyanoethyl N,N-diisopropylphosphoramidochloridite, DIPEA, dry THF, overnight.

74% 80%

Page 13: Synthesis of five-MemberedConformationally  Locked 2´,4´-Carbocyclic  ribo - Thimidine.

Thank you.