Swine H1 Clade ASV2017 web - Influenza Research Database · •H1 avN1 Challenges inconsistent...
Transcript of Swine H1 Clade ASV2017 web - Influenza Research Database · •H1 avN1 Challenges inconsistent...
An automated global clade classification tool for H1 hemagglutinin genes from
swine influenza A viruses
Yun ZhangJ. Craig Venter Institute
June 25, 2017
Outline
A web-based, automated H1 clade classification tool
Comprehensive H1 clade annotations in IRD
H1 clade based analysis and visualization
Swine H1 has diversified into 3 genetic lineagesclassical swine H1 from 1918 Spanish flu
• a, b, g, H1N1pdm09 human seasonal lineage
• d, H1huN2, A/swine/Italy/4675/2003Eurasian avian lineage
• H1avN1
Challengesinconsistent naming conventionslimited global data
Genetic Diversity of Swine Influenza A Viruses
Global Swine H1 Classification Nomenclature
Global Swine H1 HA PhylogenyProposed by influenza expertsAnderson TK, Macken CA, Lewis NS, Scheuermann RH, Van Reeth K, Brown IH, Swenson SL, Simon G, Saito T, Berhane Y, Ciacci-Zanella J, Pereda A, Davis CT, Donis RO, Webby RJ, Vincent AL (2016) A Phylogeny-Based Global Nomenclature System and Automated Annotation Tool for H1 Hemagglutinin Genes from Swine Influenza A Viruses. mSphere. doi: 10.1128/mSphere.00275-16
Best-known H1 treeSwine, human & avian7070 H1 sequences
H1 reference tree239 H1s
BenefitsReflect the evolution of swine IAV in a global contextA unified nomenclature system
Best-known H1 tree
A B C
Sequence Identifier
Global Swine H1 Clade Classification (SOP) US Swine H1 Clade Classification (SOP)
Clade Assignment Unified Tree Tree Viewer Clade Assignment Unified Tree Tree Viewer
2016054341 1B.2.2.1 Download View Tree delta1 Download View Tree
400183 1B.2.1 Download View Tree delta2 Download View Tree
63709BNot H1 Sequence. Unable to determine classification.
Not H1 Sequence. Unable to determine classification.
33325Not H1 Sequence. Unable to determine classification.
Not H1 Sequence. Unable to determine classification.
Swine H1 Clade Classification Report
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Release Date: Sep 29, 2016
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials.This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
Save Analysis Download Raw Result
Swine H1 Clade Classification Report
Sequence Identifier Clade Assignment Unified Tree Tree Viewer
2016054341|HA|swine|USA|Indiana|2016 delta1 Download View Tree
402352|HA|swine|Mexico||2010 npdm Download View Tree
63709A|HA|swine|USA|North_Carolina|2015 gamma Download View Tree
400183|HA|swine|USA|Iowa|2015 delta2 Download View Tree
74112|HA|swine|USA|Indiana|2016 delta1 Download View Tree
17581|HA|swine|USA|Illinois|2015 Not H1 Sequence Unable to determine classification
404009|HA|swine|Canada|Alberta|2015 Not H1 Sequence Unable to determine classification
63709B|HA|swine|USA|North_Carolina|2015 Not H1 Sequence Unable to determine classification
33325|HA|swine|USA|Missouri|2015 Not H1 Sequence Unable to determine classification
Home Swine H1 Clade Classification Results
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• Rename “Swine H1 Clade” to “US Swine H1 Clade”• Add SOP for US Swine H1 Clade• Add “Global Swine H1 Clade (SOP)”
GU052518|Influenza A Virus|A/chicken/Scotland/1959|H5N1|1959|Chicken/Avian|-N/A-|United Kingdom|-N/A-|-N/A-|Outgroup|OutgroupCY147406|Influenza A Virus|A/swine/JY2/1931(H1N1)|H1N1|1931|Swine|-N/A-|Unknown|-N/A-|-N/A-|alpha|1A.1EU139824|Influenza A Virus|A/swine/Iowa/1945|H1N1|1945|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY027291|Influenza A Virus|A/swine/Ohio/23/1935|H1N1|1935|Swine|North America|USA|Ohio|-N/A-|alpha|1A.1
CY022437|Influenza A Virus|A/swine/Wisconsin/2/1970|H1N1|1970|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1EU139826|Influenza A Virus|A/swine/Iowa/1973|H1N1|1973|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
AB620186|Influenza A Virus|A/swine/Saraburi/NIAH116625-17/2009|H1N1|11/2009|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1CY022421|Influenza A Virus|A/swine/Wisconsin/11/1980|H1N1|1980|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1
JN043430|Influenza A Virus|A/swine/Korea/VDS3/2009|H1N1|09/2009|Swine|Asia|South Korea|-N/A-|08-09|alpha|1A.1.1JF713826|Influenza A Virus|A/swine/QC/370/2009|H1N1|05/08/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF713904|Influenza A Virus|A/swine/QC/1697-2/2009|H1N1|05/15/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF714129|Influenza A Virus|A/swine/QC/729-B/2009|H1N1|09/04/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1CY194974|Influenza A Virus|A/swine/Manitoba/D0290/2013|H1N2|11/20/2013|Swine|North America|Canada|-N/A-|13-14|alpha|1A.1.1CY195551|Influenza A Virus|A/swine/Manitoba/D0378/2015|H1N2|04/14/2015|Swine|North America|Canada|-N/A-|14-15|alpha|1A.1.1CY194365|Influenza A Virus|A/swine/Manitoba/D0175/2012|H1N1|10/23/2012|Swine|North America|Canada|-N/A-|12-13|alpha|1A.1.1
CY085590|Influenza A Virus|A/swine/Hong Kong/1304/2003|H1N2|09/28/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.1FJ752514|Influenza A Virus|A/swine/Taichung/E3/1992(H1N1)|H1N1|09/08/1992|Swine|Asia|Taiwan|-N/A-|-N/A-|alpha|1A.1.1
CY028788|Influenza A Virus|A/swine/Iowa/1/1986|H1N1|1986|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY022317|Influenza A Virus|A/swine/Iowa/1/1985|H1N1|1985|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
KJ162037|Influenza A Virus|A/swine/Thailand/CU-S3350N/2012|H1N1|02/13/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KM355368|Influenza A Virus|A/swine/Thailand/CU-S3631N/2012|H1N2|12/06/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
AB434288|Influenza A Virus|A/swine/Ratchaburi/NIAH1481/2000|H1N1|2000|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KC610049|Influenza A Virus|A/swine/Thailand/CU-SPL4/2010|H1N1|08/10/2010|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KJ162044|Influenza A Virus|A/swine/Thailand/CU-S3340N/2012|H1N1|01/24/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
GQ229261|Influenza A Virus|A/swine/Hong Kong/NS837/2001(H1N1)|H1N1|04/09/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1CY027155|Influenza A Virus|A/swine/Iowa/24297/1991|H1N1|1991|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY028780|Influenza A Virus|A/swine/California/T9001707/1991|H1N1|1991|Swine|North America|USA|California|-N/A-|alpha|1A.1KF057118|Influenza A Virus|A/swine/Beijing/216/1992(H1N1)|H1N1|1992|Swine|Asia|China|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085073|Influenza A Virus|A/swine/Hong Kong/1286/1993|H1N1|11/29/1993|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3
CY085350|Influenza A Virus|A/swine/Hong Kong/NS143/2000|H1N1|09/15/2000|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085478|Influenza A Virus|A/swine/Hong Kong/NS1680/2001|H1N1|12/28/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.3
JN375115|Influenza A Virus|A/swine/Guangdong/603/2010(H1N2)|H1N2|02/27/2010|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3KM029815|Influenza A Virus|A/swine/Guangdong/NS3155/2012|H1N2|09/13/2012|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3
CY087088|Influenza A Virus|A/swine/Hong Kong/2503/1994|H1N1|04/25/1994|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1GU086033|Influenza A Virus|A/swine/Guangdong/446/2006(H1N1)|H1N1|2006|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1FJ536842|Influenza A Virus|A/swine/Guangdong/1/2005|H1N1|2005|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1
KU976666|Influenza A Virus|A/swine/Mexico/AVX3/2011|H1N1|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976612|Influenza A Virus|A/swine/Mexico/AVX42/2012|H1N1|11/26/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976570|Influenza A Virus|A/swine/Mexico/AVX11/2012|H1N1|03/13/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1
CY159249|Influenza A Virus|A/swine/Minnesota/SG1470/2004|H1N1|08/13/2004|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2KU752363|Influenza A Virus|A/swine/Oklahoma/A01730424/2016|H1N1|01/22/2016|Swine|North America|USA|Oklahoma|15-16|beta|1A.2KF712462|Influenza A Virus|A/swine/Nebraska/A01399492/2013|H1N1|09/05/2013|Swine|North America|USA|Nebraska|-N/A-|beta|1A.2KC445220|Influenza A Virus|A/swine/Nebraska/A01277829/2012|H1N1|11/27/2012|Swine|North America|USA|Nebraska|12-13|beta|1A.2
AF455679|Influenza A Virus|A/Swine/Iowa/930/01|H1N2|2001|Swine|North America|USA|Iowa|-N/A-|beta|1A.2AF455678|Influenza A Virus|A/Swine/Minnesota/55551/00|H1N2|2000|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2CY098476|Influenza A Virus|A/swine/North Carolina/47834/2000|H1N1|2000|Swine|North America|USA|North Carolina|-N/A-|beta|1A.2CY040545|Influenza A Virus|A/swine/North Carolina/7571/2003|H1N1|2003|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3CY157935|Influenza A Virus|A/swine/North Carolina/01169/2006|H1N2|06/22/2006|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3
CY157743|Influenza A Virus|A/swine/Tennessee/00264/2004|H1N1|03/11/2004|Swine|North America|USA|Tennessee|03-04|gamma2|1A.3JQ906888|Influenza A Virus|A/swine/Minnesota/A01201429/2011|H1N2|01/27/2011|Swine|North America|USA|Minnesota|10-11|gamma2|1A.3.2
CY159613|Influenza A Virus|A/swine/Texas/SG1187/2004|H1N1|02/25/2004|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY159761|Influenza A Virus|A/swine/Texas/00525/2005|H1N1|03/08/2005|Swine|North America|USA|Texas|04-05|gamma2|1A.3.2
KC134375|Influenza A Virus|A/swine/Illinois/A01203922/2012|H1N1|10/2012|Swine|North America|USA|Illinois|12-13|gamma2|1A.3.2JQ922326|Influenza A Virus|A/swine/Oklahoma/A01134908/2011|H1N1|03/24/2011|Swine|North America|USA|Oklahoma|10-11|gamma2|1A.3.2
CY157631|Influenza A Virus|A/swine/Texas/00195/2003|H1N1|10/15/2003|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY098516|Influenza A Virus|A/swine/North Carolina/18161/2002|H1N1|2002|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3.3CY157647|Influenza A Virus|A/swine/Kentucky/SG1167/2003|H1N1|01/22/2003|Swine|North America|USA|Kentucky|02-03|gamma-npdm-like|1A.3.3
AF250124|Influenza A Virus|A/Swine/Indiana/9K035/99|H1N2|1999|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3AF455681|Influenza A Virus|A/Swine/Illinois/100085A/01|H1N2|2001|Swine|North America|USA|Illinois|-N/A-|gamma|1A.3.3.3
KJ640283|Influenza A Virus|A/swine/Indiana/13TOSU1052/2013|H1N2|07/01/2013|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3KX036706|Influenza A Virus|A/swine/Illinois/A01733206/2016|H1N1|03/10/2016|Swine|North America|USA|Illinois|15-16|gamma|1A.3.3.3KT767634|Influenza A Virus|A/swine/Iowa/A02025552/2015|H1N1|08/13/2015|Swine|North America|USA|Iowa|-N/A-|gamma|1A.3.3.3
CY107827|Influenza A Virus|A/swine/Korea/1130/2009|H1N2|01/2009|Swine|Asia|South Korea|-N/A-|08-09|gamma|1A.3.3.3AF455675|Influenza A Virus|A/Swine/Ohio/891/01|H1N2|2001|Swine|North America|USA|Ohio|-N/A-|gamma|1A.3.3.3AF455680|Influenza A Virus|A/Swine/Indiana/P12439/00|H1N2|2000|Swine|North America|USA|Indiana|-N/A-|npdm|1A.3.3
KU976628|Influenza A Virus|A/swine/Mexico/AVX27/2012|H1N1|08/02/2012|Swine|North America|Mexico|-N/A-|-N/A-|npdm|1A.3.3.2HQ424885|Influenza A Virus|A/swine/Iowa/44837-1/2009(H1N1)|H1N1|11/08/2009|Swine|North America|USA|Iowa|09-10|npdm|1A.3.3.2
JF279888|Influenza A Virus|A/swine/Costa Rica/000125-14/2010|H1N1|11/01/2010|Swine|North America|Costa Rica|-N/A-|-N/A-|npdm|1A.3.3.2KC222556|Influenza A Virus|A/swine/Freren/IDT13837-1/2011|H1N2|08/31/2011|Swine|Europe|Germany|-N/A-|-N/A-|npdm|1A.3.3.2CY114996|Influenza A Virus|A/swine/Pennsylvania/A01134526/2011|H1N1|02/14/2011|Swine|North America|USA|Pennsylvania|10-11|npdm|1A.3.3.2HQ291549|Influenza A Virus|A/swine/IL/27486-2/2010(H1N1)|H1N1|06/02/2010|Swine|North America|USA|Illinois|-N/A-|npdm|1A.3.3.2KU666855|Influenza A Virus|A/swine/Nebraska/A01729687/2016|H1N1|01/15/2016|Swine|North America|USA|Nebraska|15-16|npdm|1A.3.3.2
CY057462|Influenza A Virus|A/Wisconsin/629-D00839/2009(H1N1)|H1N1|09/22/2009|Human|North America|USA|Wisconsin|08-09|npdm|NAJF714082|Influenza A Virus|A/swine/MB/36/2009|H1N1|10/06/2009|Swine|North America|Canada|-N/A-|09-10|npdm|1A.3.3.2KM027967|Influenza A Virus|A/swine/Guangxi/NS2777/2010|H1N2|11/07/2010|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3KM028087|Influenza A Virus|A/swine/Guangxi/2891/2011|H1N2|10/09/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3
GQ229333|Influenza A Virus|A/swine/Hong Kong/1562/2005(H1N2)|H1N2|11/11/2005|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085998|Influenza A Virus|A/swine/Hong Kong/NS252/2009|H1N2|03/19/2009|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1KM027639|Influenza A Virus|A/swine/Guangdong/3583/2011|H1N2|10/27/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
GQ229365|Influenza A Virus|A/swine/Hong Kong/NS623/2002(H1N2)|H1N2|07/09/2002|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085622|Influenza A Virus|A/swine/Hong Kong/NS30/2004|H1N2|01/06/2004|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1EF556199|Influenza A Virus|A/swine/Guangxi/13/2006|H1N2|2006|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
KM028935|Influenza A Virus|A/swine/Hong Kong/4083/2011|H1N2|10/20/2011|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1GQ229309|Influenza A Virus|A/swine/Hong Kong/78/2003(H1N2)|H1N2|01/23/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|gamma-npdm-like|1A.3.3
AF116575|Influenza A Virus|A/Brevig Mission/1/1918|H1N1|1918|Human|North America|USA|Alaska|-N/A-|Other|Other-HumanD00837|Influenza A Virus|A/swine/Cambridge/1939|H1N1|1939|Swine|Europe|United Kingdom|-N/A-|-N/A-|ND|Other-Human
CY019755|Influenza A Virus|A/Memphis/49/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY021029|Influenza A Virus|A/Baylor/4052/1981|H1N1|1981|Human|North America|USA|Texas|-N/A-|Other|Other-HumanCY017235|Influenza A Virus|A/Memphis/29/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY020189|Influenza A Virus|A/New Zealand/7/1983|H1N1|1983|Human|Oceania|New Zealand|-N/A-|-N/A-|Other|Other-HumanCY020565|Influenza A Virus|A/Texas/2922-3/1986|H1N1|1986|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2DQ508873|Influenza A Virus|A/Taiwan/01/1986|H1N1|1986|Human|Asia|Taiwan|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY045852|Influenza A Virus|A/Siena/4/1987(H1N1)|H1N1|1987|Human|Europe|Italy|-N/A-|-N/A-|delta-like|Other-Human-1B.2JX477159|Influenza A Virus|A/Florida/2/1993(H1N1)|H1N1|1993|Human|North America|USA|Florida|-N/A-|delta-like|Other-Human-1B.2JX477164|Influenza A Virus|A/Wellington/47/1992|H1N1|1992|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125084|Influenza A Virus|A/Moscow/13/1998|H1N1|1998|Human|Europe|Russia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY117691|Influenza A Virus|A/Malaysia/06768/1995|H1N1|05/16/1995|Human|Asia|Malaysia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY016963|Influenza A Virus|A/New York/633/1995|H1N1|12/15/1995|Human|North America|USA|New York|95-96|delta-like|Other-Human-1B.2
CY009316|Influenza A Virus|A/Texas/36/91|H1N1|1991|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2CY033614|Influenza A Virus|A/Beijing/262/1995|H1N1|1995|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125076|Influenza A Virus|A/Shanghai/2/1997|H1N1|1997|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2GU646016|Influenza A Virus|A/swine/Fujian/0325/2008|H1N1|03/25/2008|Swine|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2EU097934|Influenza A Virus|A/Denmark/3/2001|H1N1|2001|Human|Europe|Denmark|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KU976716|Influenza A Virus|A/swine/Mexico/AVX7/2011|H1N2|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2KU976748|Influenza A Virus|A/swine/Mexico/AVX49/2013|H1N2|03/25/2013|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KP456570|Influenza A Virus|A/Canterbury/23/2000|H1N1|08/03/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY022149|Influenza A Virus|A/Auckland/579/2000|H1N1|08/30/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY086839|Influenza A Virus|A/swine/Hong Kong/1435/2006|H1N1|10/12/2006|Swine|Asia|Hong Kong|-N/A-|-N/A-|delta-like|Other-Human-1B.2AB628080|Influenza A Virus|A/swine/Binh Doung/02_16/2010|H1N2|2010|Swine|Asia|Viet Nam|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY104020|Influenza A Virus|A/HaNoi/BM898/2003|H1N1|10/14/2003|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2-delta-like|Other-Human-1B.2CY002984|Influenza A Virus|A/New York/221/2003|H1N1|03/21/2003|Human|North America|USA|New York|02-03|delta2|Other-Human-1B.2CY104822|Influenza A Virus|A/Hanoi/ISBM31/2005|H1N1|04/08/2005|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2|Other-Human-1B.2CY075856|Influenza A Virus|A/swine/Argentina/CIP051-BsAs76/2009|H1N1|10/2009|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2KR863479|Influenza A Virus|A/swine/Argentina/CIP051-C05-M1-1/2012|H1N2|12/05/2012|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2
HQ896649|Influenza A Virus|A/swine/Minnesota/6004-1/2009|H1N1|11/19/2009|Swine|North America|USA|Minnesota|09-10|delta2|Other-Human-1B.2KP457752|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|NAEU100706|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|Other-Human-1B.2CY159409|Influenza A Virus|A/swine/North Carolina/01550/2007|H1N1|04/04/2007|Swine|North America|USA|North Carolina|06-07|delta2|1B.2.1
KU598293|Influenza A Virus|A/swine/Indiana/A01729197/2016|H1N2|01/07/2016|Swine|North America|USA|Indiana|15-16|delta2|1B.2.1KU752378|Influenza A Virus|A/swine/North Carolina/A01730690/2016|H1N2|01/28/2016|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1KT000052|Influenza A Virus|A/swine/North Carolina/A02077509/2015|H1N2|05/06/2015|Swine|North America|USA|North Carolina|14-15|delta2|1B.2.1KU160750|Influenza A Virus|A/swine/North Carolina/A01945825/2015|H1N2|10/22/2015|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1
FJ638298|Influenza A Virus|A/swine/IL/00685/2005(H1N1)|H1N1|2005|Swine|North America|USA|Illinois|-N/A-|delta2|1B.2.1CY099151|Influenza A Virus|A/swine/North Carolina/00839/2005(H1N1)|H1N1|10/27/2005|Swine|North America|USA|North Carolina|05-06|delta2|1B.2.1HQ896632|Influenza A Virus|A/swine/Indiana/0582-3/2009|H1N2|08/04/2009|Swine|North America|USA|Indiana|08-09|delta2|1B.2.1
CY098509|Influenza A Virus|A/swine/North Carolina/38448-1/2005|H1N1|2005|Swine|North America|USA|North Carolina|-N/A-|delta2|1B.2.1KP027593|Influenza A Virus|A/swine/Brazil/G2P2/2013(H1N2)|H1N2|06/05/2013|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KM507519|Influenza A Virus|A/swine/Brazil/185-11-7/2011|H1N2|07/06/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KF680296|Influenza A Virus|A/swine/Brazil/31_11_1/2011|H1N2|02/25/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2CY075864|Influenza A Virus|A/swine/Argentina/CIP051-StaFeN2/2010|H1N2|05/2010|Swine|South America|Argentina|-N/A-|-N/A-|delta-like|1B.2.2
DQ280236|Influenza A Virus|A/swine/Ontario/48235/04|H1N2|2004|Swine|North America|Canada|-N/A-|-N/A-|delta-like|1B.2.2JN652497|Influenza A Virus|A/swine/Iowa/A01049766/2011|H1N2|03/29/2011|Swine|North America|USA|Iowa|10-11|delta-like|1B.2.2JX975013|Influenza A Virus|A/swine/Oklahoma/A01203865/2012|H1N2|09/2012|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2JQ023762|Influenza A Virus|A/swine/Minnesota/0745/2010|H1N2|03/03/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2KC333087|Influenza A Virus|A/swine/Illinois/A01271513/2012|H1N2|10/26/2012|Swine|North America|USA|Illinois|12-13|delta1|1B.2.2.2KT924274|Influenza A Virus|A/swine/Iowa/A01795227/2015|H1N2|09/23/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2
KF922774|Influenza A Virus|A/swine/North Carolina/A01290725/2013|H1N2|11/2013|Swine|North America|USA|North Carolina|13-14|delta1|1B.2.2.2KF922759|Influenza A Virus|A/swine/Kansas/A01290646/2013|H1N2|10/14/2013|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.2KT867232|Influenza A Virus|A/swine/Iowa/A02076974/2015|H1N2|09/09/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2KF697082|Influenza A Virus|A/swine/Nebraska/A01399636/2013|H1N2|09/09/2013|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.2
JN652509|Influenza A Virus|A/swine/Arkansas/A01049917/2011|H1N2|05/03/2011|Swine|North America|USA|Arkansas|10-11|delta1|1B.2.2.2HQ896639|Influenza A Virus|A/swine/Minnesota/0913-1/2009|H1N2|09/16/2009|Swine|North America|USA|Minnesota|08-09|delta1|1B.2.2.2CY045599|Influenza A Virus|A/swine/Oklahoma/010226-17/2008(H1N2)|H1N2|2008|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2.2HM570049|Influenza A Virus|A/swine/Minnesota/03023/2010(H1N2)|H1N2|04/26/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2JN652405|Influenza A Virus|A/swine/Oklahoma/A01049500/2011|H1N2|02/03/2011|Swine|North America|USA|Oklahoma|10-11|delta1|1B.2.2.2JX657805|Influenza A Virus|A/swine/Minnesota/A01076183/2009|H1N2|12/28/2009|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1HQ896666|Influenza A Virus|A/swine/Minnesota/8721-1/2010|H1N2|04/14/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1KF704120|Influenza A Virus|A/swine/Iowa/13C094/2013|H1N2|03/26/2013|Swine|North America|USA|Iowa|12-13|delta1|1B.2.2.1KT825123|Influenza A Virus|A/swine/Iowa/A01770929/2015|H1N2|09/01/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.1KU198904|Influenza A Virus|A/swine/Nebraska/A01940285/2015|H1N2|09/02/2015|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.1KX036670|Influenza A Virus|A/swine/Illinois/A01733533/2016|H1N2|03/15/2016|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1KU695705|Influenza A Virus|A/swine/Oklahoma/A01730089/2016|H1N2|01/22/2016|Swine|North America|USA|Oklahoma|15-16|delta1|1B.2.2.1
KJ777467|Influenza A Virus|A/swine/Kansas/A01377287/2014|H1N2|04/01/2014|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.1KU379643|Influenza A Virus|A/swine/Illinois/A01896080/2015|H1N2|11/30/2015|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1
CY099207|Influenza A Virus|A/swine/Minnesota/02324/2008|H1N2|09/10/2008|Swine|North America|USA|Minnesota|-N/A-|delta1|1B.2.2.1CY115896|Influenza A Virus|A/swine/England/00003/2009|H1N2|01/12/2009|Swine|Europe|United Kingdom|-N/A-|08-09|delta-like|1B.2.2
AF085413|Influenza A Virus|A/swine/Scotland/410440/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1AF085414|Influenza A Virus|A/swine/England/438207/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1CY116159|Influenza A Virus|A/swine/England/40280/1996|H1N2|07/09/1996|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116198|Influenza A Virus|A/swine/England/448813/1994|H1N2|04/24/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.1
KR700342|Influenza A Virus|A/swine/Scotland/51190/1999|H1N2|09/30/1999|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116323|Influenza A Virus|A/swine/England/88761/1997|H1N2|02/03/1997|Swine|Europe|United Kingdom|-N/A-|96-97|Other|1B.1.1
KR700493|Influenza A Virus|A/swine/England/038712/2012|H1N2|12/05/2012|Swine|Europe|United Kingdom|-N/A-|12-13|Other|1B.1.1JF297998|Influenza A Virus|A/swine/England/1428/2009|H1N2|12/08/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1JF297997|Influenza A Virus|A/swine/England/1157/2009|H1N2|10/05/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1KR699860|Influenza A Virus|A/swine/England/058879/2011|H1N2|05/16/2011|Swine|Europe|United Kingdom|-N/A-|10-11|Other|1B.1.1
CY115912|Influenza A Virus|A/swine/England/002295/2002|H1N2|12/04/2002|Swine|Europe|United Kingdom|-N/A-|02-03|Other|1B.1.1KR700601|Influenza A Virus|A/swine/England/463180/1994|H1N2|05/12/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.2HQ660233|Influenza A Virus|A/swine/Italy/3592/1999|H1N2|1999|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2CY116487|Influenza A Virus|A/swine/Italy/172336/2001|H1N1|2001|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2
HQ660238|Influenza A Virus|A/swine/Italy/70757/2009|H1N2|2009|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KF305978|Influenza A Virus|A/swine/Italy/20333/2006|H1N2|2006|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KR700193|Influenza A Virus|A/swine/France/CotesdArmor-0198/2011|H1N2|04/11/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3KC295233|Influenza A Virus|A/swine/France/22-120255/2012|H1N2|2012|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3KJ128311|Influenza A Virus|A/swine/France/22-120390/2012|H1N2|11/16/2012|Swine|Europe|France|-N/A-|12-13|Other|1B.1.2.3KC345629|Influenza A Virus|A/swine/France/22-110153/2011|H1N2|03/07/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3
CY116367|Influenza A Virus|A/swine/Cotes d'Armor/1174/2009|H1N2|2009|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3CY116410|Influenza A Virus|A/swine/Cotes d'Armor/790/1997|H1N2|1997|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3EU053148|Influenza A Virus|A/swine/Bakum/1832/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1B.1.2.1AJ344010|Influenza A Virus|A/swine/Italy/1081/00|H1N2|2000|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.1
KR700883|Influenza A Virus|A/swine/Netherlands/De-Lutte-167A/2012|H1N2|04/25/2012|Swine|Europe|Netherlands|-N/A-|11-12|Other|1B.1.2.1CY116550|Influenza A Virus|A/swine/Spain/40564/2002(H1N2)|H1N2|2002|Swine|Europe|Spain|-N/A-|-N/A-|Other|1B.1.2.1CY116442|Influenza A Virus|A/swine/Gent/177/2002|H1N2|2002|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1B.1.2.1
KR699932|Influenza A Virus|A/swine/Belgium/Oostkamp-26/2012|H1N2|01/12/2012|Swine|Europe|Belgium|-N/A-|11-12|Other|1B.1.2.1KR700177|Influenza A Virus|A/swine/Spain/29257/2012|H1N2|01/30/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2KR700592|Influenza A Virus|A/swine/Spain/29262/2012|H1N2|01/31/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2
AF085415|Influenza A Virus|A/swine/England/690421/95|H1N2|1995|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.2KR700057|Influenza A Virus|A/swine/Denmark/10-1958-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KR700049|Influenza A Virus|A/swine/Denmark/10-1725-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
CY116531|Influenza A Virus|A/swine/Lutol/3/2000(H1N1)|H1N1|2000|Swine|Europe|Poland|-N/A-|-N/A-|Other|1C.2.3CY116356|Influenza A Virus|A/swine/Finnistere/800/2004|H1N1|2004|Swine|Europe|France|-N/A-|-N/A-|Other|1C.2.3CY085550|Influenza A Virus|A/swine/Hong Kong/NS129/2003|H1N1|02/06/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
KM028327|Influenza A Virus|A/swine/Guangxi/3612/2011|H1N1|12/11/2011|Swine|Asia|China|-N/A-|-N/A-|Other|1C.2.3KM029167|Influenza A Virus|A/swine/Hong Kong/126/2012|H1N1|01/05/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3KM029311|Influenza A Virus|A/swine/Hong Kong/NS967/2012|H1N1|03/15/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
AM920737|Influenza A Virus|A/swine/Germany/SEk1178/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.2.2GQ161124|Influenza A Virus|A/swine/Haseluenne/IDT2617/2003|H1N1|10/09/2003|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.2JQ301929|Influenza A Virus|A/swine/Spain/16/2009|H1N1|07/2009|Swine|Europe|Spain|-N/A-|08-09|Other|1C.2.2KU517792|Influenza A Virus|A/Poland/wild boar/1951718/2013|H1N1|12/12/2013|Swine|Europe|Poland|-N/A-|13-14|Other|1C.2.2KR700366|Influenza A Virus|A/swine/Germany/Reinberg-IDT14457-1/2012|H1N1|01/02/2012|Swine|Europe|Germany|-N/A-|11-12|Other|1C.2.2
CY009892|Influenza A Virus|A/swine/Spain/50047/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.2GQ161156|Influenza A Virus|A/swine/Greven/IDT2889/2004|H1N1|01/07/2004|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.1
KJ847576|Influenza A Virus|A/swine/Italy/50814/2012|H1N1|01/2012|Swine|Europe|Italy|-N/A-|11-12|Other|1C.2.1KR700891|Influenza A Virus|A/swine/Belgium/Lichtervelde-57/2013|H1N1|03/01/2013|Swine|Europe|Belgium|-N/A-|12-13|Other|1C.2.1
CY116466|Influenza A Virus|A/swine/Italy/151672-3/2003|H1N1|2003|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.2.1CY010572|Influenza A Virus|A/swine/Spain/51915/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1
KR700869|Influenza A Virus|A/swine/Netherlands/Wijhe-371/2012|H1N1|10/24/2012|Swine|Europe|Netherlands|-N/A-|12-13|Other|1C.2.1JX908073|Influenza A Virus|A/swine/Spain/03/2008|H1N1|06/01/2008|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1KR066556|Influenza A Virus|A/swine/Denmark/101081-2/2010|H1N2|05/28/2010|Swine|Europe|Denmark|-N/A-|09-10|Other|1C.2KC900284|Influenza A Virus|A/swine/Denmark/13160-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KC900282|Influenza A Virus|A/swine/Denmark/13772-1/2003|H1N1|2003|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR066560|Influenza A Virus|A/swine/Denmark/10913-1/2009|H1N1|04/2009|Swine|Europe|Denmark|-N/A-|08-09|Other|1C.2KC900270|Influenza A Virus|A/swine/Denmark/13184-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
FJ805962|Influenza A Virus|A/swine/Belgium/1/1998|H1N1|1998|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1C.2CY038023|Influenza A Virus|A/swine/Denmark/WVL9/1993|H1N1|1993|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR700640|Influenza A Virus|A/swine/England/267/2007|H1N1|02/22/2007|Swine|Europe|United Kingdom|-N/A-|06-07|Other|1C.1CY116206|Influenza A Virus|A/swine/England/453/2006|H1N1|05/05/2006|Swine|Europe|United Kingdom|-N/A-|05-06|Other|1C.1
KR701057|Influenza A Virus|A/swine/England/024079/2013|H1N1|08/21/2013|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1CY116074|Influenza A Virus|A/swine/England/26029/1998|H1N1|06/17/1998|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1
CY037999|Influenza A Virus|A/swine/Spain/WVL6/1991|H1N1|1991|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.1AJ344019|Influenza A Virus|A/swine/Italy/1498-2/97|H1N1|1997|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.1AM920728|Influenza A Virus|A/swine/Germany/Vi5698/1995|H1N1|1995|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1
KJ889364|Influenza A Virus|A/swine/Germany/S27/1981|H1N1|1981|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1AF091314|Influenza A Virus|A/swine/Netherlands/3/80|H1N1|1980|Swine|Europe|Netherlands|-N/A-|-N/A-|Other|1C.1KJ889300|Influenza A Virus|A/swine/Arnsberg/1/1979|H1N1|12/07/1979|Swine|Europe|Germany|-N/A-|79-80|Other|1C.1KT715450|Influenza A Virus|A/duck/Schleswig/21/1979|H1N1|1979|Duck/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianKT715445|Influenza A Virus|A/coot/Schleswig/2/1980|H1N1|1980|Common Coot/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianD00839|Influenza A Virus|A/duck/HK/196/1977|H1|1977|Duck/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-Avian
GU066779|Influenza A Virus|A/mallard/Marquenterre/Z237/1983(H1N1)|H1N1|1983|Mallard/Avian|Europe|France|-N/A-|-N/A-|Other|Other-AvianAB271113|Influenza A Virus|A/duck/Miyagi/66/1977|H1N1|1977|Duck/Avian|Asia|Japan|-N/A-|-N/A-|Other|Other-Avian
KP658029|Influenza A Virus|A/duck/Hainan/Q221/2012|H1N2|2012|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-AvianKP658037|Influenza A Virus|A/duck/Fujian/89/2013|H1N8|2013|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-Avian
EF679200|Influenza A Virus|A/chicken/Hong Kong/14/1976|H1N1|1976|Chicken/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-AvianCY094927|Influenza A Virus|A/duck/Victoria/2b/1980|H1N1|1980|Duck/Avian|Oceania|Australia|-N/A-|-N/A-|Other|Other-AvianCY179139|Influenza A Virus|A/thick-billed murre/Alaska/335/1976|H1N6|1976|Murre/Avian|North America|USA|Alaska|-N/A-|Other|Other-Avian
CY178994|Influenza A Virus|A/blue-winged teal/Wisconsin/336/1976|H1N1|1976|Blue-Winged Teal/Avian|North America|USA|Wisconsin|-N/A-|Other|Other-AvianCY004507|Influenza A Virus|A/mallard/ALB/201/1998|H1N1|08/11/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
AF091310|Influenza A Virus|A/turkey/Minnesota/1661/81|H1N1|1981|Turkey/Avian|North America|USA|Minnesota|-N/A-|Other|Other-AvianCY136973|Influenza A Virus|A/mallard/Alberta/119/1998|H1N1|08/06/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
CY146085|Influenza A Virus|A/ruddy turnstone/New Jersey/AI09-618/2009|H1N9|05/26/2009|Ruddy Turnstone/Avian|North America|USA|New Jersey|08-09|Other|Other-AvianCY186648|Influenza A Virus|A/blue-winged teal/Illinois/12OS4788/2012|H1N1|10/20/2012|Blue-Winged Teal/Avian|North America|USA|Illinois|12-13|Other|Other-Avian
0.1
GU052518|Influenza A Virus|A/chicken/Scotland/1959|H5N1|1959|Chicken/Avian|-N/A-|United Kingdom|-N/A-|-N/A-|Outgroup|OutgroupCY147406|Influenza A Virus|A/swine/JY2/1931(H1N1)|H1N1|1931|Swine|-N/A-|Unknown|-N/A-|-N/A-|alpha|1A.1EU139824|Influenza A Virus|A/swine/Iowa/1945|H1N1|1945|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY027291|Influenza A Virus|A/swine/Ohio/23/1935|H1N1|1935|Swine|North America|USA|Ohio|-N/A-|alpha|1A.1
CY022437|Influenza A Virus|A/swine/Wisconsin/2/1970|H1N1|1970|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1EU139826|Influenza A Virus|A/swine/Iowa/1973|H1N1|1973|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
AB620186|Influenza A Virus|A/swine/Saraburi/NIAH116625-17/2009|H1N1|11/2009|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1CY022421|Influenza A Virus|A/swine/Wisconsin/11/1980|H1N1|1980|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1
JN043430|Influenza A Virus|A/swine/Korea/VDS3/2009|H1N1|09/2009|Swine|Asia|South Korea|-N/A-|08-09|alpha|1A.1.1JF713826|Influenza A Virus|A/swine/QC/370/2009|H1N1|05/08/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF713904|Influenza A Virus|A/swine/QC/1697-2/2009|H1N1|05/15/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF714129|Influenza A Virus|A/swine/QC/729-B/2009|H1N1|09/04/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1CY194974|Influenza A Virus|A/swine/Manitoba/D0290/2013|H1N2|11/20/2013|Swine|North America|Canada|-N/A-|13-14|alpha|1A.1.1CY195551|Influenza A Virus|A/swine/Manitoba/D0378/2015|H1N2|04/14/2015|Swine|North America|Canada|-N/A-|14-15|alpha|1A.1.1CY194365|Influenza A Virus|A/swine/Manitoba/D0175/2012|H1N1|10/23/2012|Swine|North America|Canada|-N/A-|12-13|alpha|1A.1.1
CY085590|Influenza A Virus|A/swine/Hong Kong/1304/2003|H1N2|09/28/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.1FJ752514|Influenza A Virus|A/swine/Taichung/E3/1992(H1N1)|H1N1|09/08/1992|Swine|Asia|Taiwan|-N/A-|-N/A-|alpha|1A.1.1
CY028788|Influenza A Virus|A/swine/Iowa/1/1986|H1N1|1986|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY022317|Influenza A Virus|A/swine/Iowa/1/1985|H1N1|1985|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
KJ162037|Influenza A Virus|A/swine/Thailand/CU-S3350N/2012|H1N1|02/13/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KM355368|Influenza A Virus|A/swine/Thailand/CU-S3631N/2012|H1N2|12/06/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
AB434288|Influenza A Virus|A/swine/Ratchaburi/NIAH1481/2000|H1N1|2000|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KC610049|Influenza A Virus|A/swine/Thailand/CU-SPL4/2010|H1N1|08/10/2010|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KJ162044|Influenza A Virus|A/swine/Thailand/CU-S3340N/2012|H1N1|01/24/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
GQ229261|Influenza A Virus|A/swine/Hong Kong/NS837/2001(H1N1)|H1N1|04/09/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1CY027155|Influenza A Virus|A/swine/Iowa/24297/1991|H1N1|1991|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY028780|Influenza A Virus|A/swine/California/T9001707/1991|H1N1|1991|Swine|North America|USA|California|-N/A-|alpha|1A.1KF057118|Influenza A Virus|A/swine/Beijing/216/1992(H1N1)|H1N1|1992|Swine|Asia|China|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085073|Influenza A Virus|A/swine/Hong Kong/1286/1993|H1N1|11/29/1993|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3
CY085350|Influenza A Virus|A/swine/Hong Kong/NS143/2000|H1N1|09/15/2000|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085478|Influenza A Virus|A/swine/Hong Kong/NS1680/2001|H1N1|12/28/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.3
JN375115|Influenza A Virus|A/swine/Guangdong/603/2010(H1N2)|H1N2|02/27/2010|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3KM029815|Influenza A Virus|A/swine/Guangdong/NS3155/2012|H1N2|09/13/2012|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3
CY087088|Influenza A Virus|A/swine/Hong Kong/2503/1994|H1N1|04/25/1994|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1GU086033|Influenza A Virus|A/swine/Guangdong/446/2006(H1N1)|H1N1|2006|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1FJ536842|Influenza A Virus|A/swine/Guangdong/1/2005|H1N1|2005|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1
KU976666|Influenza A Virus|A/swine/Mexico/AVX3/2011|H1N1|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976612|Influenza A Virus|A/swine/Mexico/AVX42/2012|H1N1|11/26/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976570|Influenza A Virus|A/swine/Mexico/AVX11/2012|H1N1|03/13/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1
CY159249|Influenza A Virus|A/swine/Minnesota/SG1470/2004|H1N1|08/13/2004|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2KU752363|Influenza A Virus|A/swine/Oklahoma/A01730424/2016|H1N1|01/22/2016|Swine|North America|USA|Oklahoma|15-16|beta|1A.2KF712462|Influenza A Virus|A/swine/Nebraska/A01399492/2013|H1N1|09/05/2013|Swine|North America|USA|Nebraska|-N/A-|beta|1A.2KC445220|Influenza A Virus|A/swine/Nebraska/A01277829/2012|H1N1|11/27/2012|Swine|North America|USA|Nebraska|12-13|beta|1A.2
AF455679|Influenza A Virus|A/Swine/Iowa/930/01|H1N2|2001|Swine|North America|USA|Iowa|-N/A-|beta|1A.2AF455678|Influenza A Virus|A/Swine/Minnesota/55551/00|H1N2|2000|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2CY098476|Influenza A Virus|A/swine/North Carolina/47834/2000|H1N1|2000|Swine|North America|USA|North Carolina|-N/A-|beta|1A.2CY040545|Influenza A Virus|A/swine/North Carolina/7571/2003|H1N1|2003|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3CY157935|Influenza A Virus|A/swine/North Carolina/01169/2006|H1N2|06/22/2006|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3
CY157743|Influenza A Virus|A/swine/Tennessee/00264/2004|H1N1|03/11/2004|Swine|North America|USA|Tennessee|03-04|gamma2|1A.3JQ906888|Influenza A Virus|A/swine/Minnesota/A01201429/2011|H1N2|01/27/2011|Swine|North America|USA|Minnesota|10-11|gamma2|1A.3.2
CY159613|Influenza A Virus|A/swine/Texas/SG1187/2004|H1N1|02/25/2004|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY159761|Influenza A Virus|A/swine/Texas/00525/2005|H1N1|03/08/2005|Swine|North America|USA|Texas|04-05|gamma2|1A.3.2
KC134375|Influenza A Virus|A/swine/Illinois/A01203922/2012|H1N1|10/2012|Swine|North America|USA|Illinois|12-13|gamma2|1A.3.2JQ922326|Influenza A Virus|A/swine/Oklahoma/A01134908/2011|H1N1|03/24/2011|Swine|North America|USA|Oklahoma|10-11|gamma2|1A.3.2
CY157631|Influenza A Virus|A/swine/Texas/00195/2003|H1N1|10/15/2003|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY098516|Influenza A Virus|A/swine/North Carolina/18161/2002|H1N1|2002|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3.3CY157647|Influenza A Virus|A/swine/Kentucky/SG1167/2003|H1N1|01/22/2003|Swine|North America|USA|Kentucky|02-03|gamma-npdm-like|1A.3.3
AF250124|Influenza A Virus|A/Swine/Indiana/9K035/99|H1N2|1999|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3AF455681|Influenza A Virus|A/Swine/Illinois/100085A/01|H1N2|2001|Swine|North America|USA|Illinois|-N/A-|gamma|1A.3.3.3
KJ640283|Influenza A Virus|A/swine/Indiana/13TOSU1052/2013|H1N2|07/01/2013|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3KX036706|Influenza A Virus|A/swine/Illinois/A01733206/2016|H1N1|03/10/2016|Swine|North America|USA|Illinois|15-16|gamma|1A.3.3.3KT767634|Influenza A Virus|A/swine/Iowa/A02025552/2015|H1N1|08/13/2015|Swine|North America|USA|Iowa|-N/A-|gamma|1A.3.3.3
CY107827|Influenza A Virus|A/swine/Korea/1130/2009|H1N2|01/2009|Swine|Asia|South Korea|-N/A-|08-09|gamma|1A.3.3.3AF455675|Influenza A Virus|A/Swine/Ohio/891/01|H1N2|2001|Swine|North America|USA|Ohio|-N/A-|gamma|1A.3.3.3AF455680|Influenza A Virus|A/Swine/Indiana/P12439/00|H1N2|2000|Swine|North America|USA|Indiana|-N/A-|npdm|1A.3.3
KU976628|Influenza A Virus|A/swine/Mexico/AVX27/2012|H1N1|08/02/2012|Swine|North America|Mexico|-N/A-|-N/A-|npdm|1A.3.3.2HQ424885|Influenza A Virus|A/swine/Iowa/44837-1/2009(H1N1)|H1N1|11/08/2009|Swine|North America|USA|Iowa|09-10|npdm|1A.3.3.2
JF279888|Influenza A Virus|A/swine/Costa Rica/000125-14/2010|H1N1|11/01/2010|Swine|North America|Costa Rica|-N/A-|-N/A-|npdm|1A.3.3.2KC222556|Influenza A Virus|A/swine/Freren/IDT13837-1/2011|H1N2|08/31/2011|Swine|Europe|Germany|-N/A-|-N/A-|npdm|1A.3.3.2CY114996|Influenza A Virus|A/swine/Pennsylvania/A01134526/2011|H1N1|02/14/2011|Swine|North America|USA|Pennsylvania|10-11|npdm|1A.3.3.2HQ291549|Influenza A Virus|A/swine/IL/27486-2/2010(H1N1)|H1N1|06/02/2010|Swine|North America|USA|Illinois|-N/A-|npdm|1A.3.3.2KU666855|Influenza A Virus|A/swine/Nebraska/A01729687/2016|H1N1|01/15/2016|Swine|North America|USA|Nebraska|15-16|npdm|1A.3.3.2
CY057462|Influenza A Virus|A/Wisconsin/629-D00839/2009(H1N1)|H1N1|09/22/2009|Human|North America|USA|Wisconsin|08-09|npdm|NAJF714082|Influenza A Virus|A/swine/MB/36/2009|H1N1|10/06/2009|Swine|North America|Canada|-N/A-|09-10|npdm|1A.3.3.2KM027967|Influenza A Virus|A/swine/Guangxi/NS2777/2010|H1N2|11/07/2010|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3KM028087|Influenza A Virus|A/swine/Guangxi/2891/2011|H1N2|10/09/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3
GQ229333|Influenza A Virus|A/swine/Hong Kong/1562/2005(H1N2)|H1N2|11/11/2005|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085998|Influenza A Virus|A/swine/Hong Kong/NS252/2009|H1N2|03/19/2009|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1KM027639|Influenza A Virus|A/swine/Guangdong/3583/2011|H1N2|10/27/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
GQ229365|Influenza A Virus|A/swine/Hong Kong/NS623/2002(H1N2)|H1N2|07/09/2002|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085622|Influenza A Virus|A/swine/Hong Kong/NS30/2004|H1N2|01/06/2004|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1EF556199|Influenza A Virus|A/swine/Guangxi/13/2006|H1N2|2006|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
KM028935|Influenza A Virus|A/swine/Hong Kong/4083/2011|H1N2|10/20/2011|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1GQ229309|Influenza A Virus|A/swine/Hong Kong/78/2003(H1N2)|H1N2|01/23/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|gamma-npdm-like|1A.3.3
AF116575|Influenza A Virus|A/Brevig Mission/1/1918|H1N1|1918|Human|North America|USA|Alaska|-N/A-|Other|Other-HumanD00837|Influenza A Virus|A/swine/Cambridge/1939|H1N1|1939|Swine|Europe|United Kingdom|-N/A-|-N/A-|ND|Other-Human
CY019755|Influenza A Virus|A/Memphis/49/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY021029|Influenza A Virus|A/Baylor/4052/1981|H1N1|1981|Human|North America|USA|Texas|-N/A-|Other|Other-HumanCY017235|Influenza A Virus|A/Memphis/29/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY020189|Influenza A Virus|A/New Zealand/7/1983|H1N1|1983|Human|Oceania|New Zealand|-N/A-|-N/A-|Other|Other-HumanCY020565|Influenza A Virus|A/Texas/2922-3/1986|H1N1|1986|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2DQ508873|Influenza A Virus|A/Taiwan/01/1986|H1N1|1986|Human|Asia|Taiwan|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY045852|Influenza A Virus|A/Siena/4/1987(H1N1)|H1N1|1987|Human|Europe|Italy|-N/A-|-N/A-|delta-like|Other-Human-1B.2JX477159|Influenza A Virus|A/Florida/2/1993(H1N1)|H1N1|1993|Human|North America|USA|Florida|-N/A-|delta-like|Other-Human-1B.2JX477164|Influenza A Virus|A/Wellington/47/1992|H1N1|1992|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125084|Influenza A Virus|A/Moscow/13/1998|H1N1|1998|Human|Europe|Russia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY117691|Influenza A Virus|A/Malaysia/06768/1995|H1N1|05/16/1995|Human|Asia|Malaysia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY016963|Influenza A Virus|A/New York/633/1995|H1N1|12/15/1995|Human|North America|USA|New York|95-96|delta-like|Other-Human-1B.2
CY009316|Influenza A Virus|A/Texas/36/91|H1N1|1991|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2CY033614|Influenza A Virus|A/Beijing/262/1995|H1N1|1995|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125076|Influenza A Virus|A/Shanghai/2/1997|H1N1|1997|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2GU646016|Influenza A Virus|A/swine/Fujian/0325/2008|H1N1|03/25/2008|Swine|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2EU097934|Influenza A Virus|A/Denmark/3/2001|H1N1|2001|Human|Europe|Denmark|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KU976716|Influenza A Virus|A/swine/Mexico/AVX7/2011|H1N2|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2KU976748|Influenza A Virus|A/swine/Mexico/AVX49/2013|H1N2|03/25/2013|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KP456570|Influenza A Virus|A/Canterbury/23/2000|H1N1|08/03/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY022149|Influenza A Virus|A/Auckland/579/2000|H1N1|08/30/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY086839|Influenza A Virus|A/swine/Hong Kong/1435/2006|H1N1|10/12/2006|Swine|Asia|Hong Kong|-N/A-|-N/A-|delta-like|Other-Human-1B.2AB628080|Influenza A Virus|A/swine/Binh Doung/02_16/2010|H1N2|2010|Swine|Asia|Viet Nam|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY104020|Influenza A Virus|A/HaNoi/BM898/2003|H1N1|10/14/2003|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2-delta-like|Other-Human-1B.2CY002984|Influenza A Virus|A/New York/221/2003|H1N1|03/21/2003|Human|North America|USA|New York|02-03|delta2|Other-Human-1B.2CY104822|Influenza A Virus|A/Hanoi/ISBM31/2005|H1N1|04/08/2005|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2|Other-Human-1B.2CY075856|Influenza A Virus|A/swine/Argentina/CIP051-BsAs76/2009|H1N1|10/2009|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2KR863479|Influenza A Virus|A/swine/Argentina/CIP051-C05-M1-1/2012|H1N2|12/05/2012|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2
HQ896649|Influenza A Virus|A/swine/Minnesota/6004-1/2009|H1N1|11/19/2009|Swine|North America|USA|Minnesota|09-10|delta2|Other-Human-1B.2KP457752|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|NAEU100706|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|Other-Human-1B.2CY159409|Influenza A Virus|A/swine/North Carolina/01550/2007|H1N1|04/04/2007|Swine|North America|USA|North Carolina|06-07|delta2|1B.2.1
KU598293|Influenza A Virus|A/swine/Indiana/A01729197/2016|H1N2|01/07/2016|Swine|North America|USA|Indiana|15-16|delta2|1B.2.1KU752378|Influenza A Virus|A/swine/North Carolina/A01730690/2016|H1N2|01/28/2016|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1KT000052|Influenza A Virus|A/swine/North Carolina/A02077509/2015|H1N2|05/06/2015|Swine|North America|USA|North Carolina|14-15|delta2|1B.2.1KU160750|Influenza A Virus|A/swine/North Carolina/A01945825/2015|H1N2|10/22/2015|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1
FJ638298|Influenza A Virus|A/swine/IL/00685/2005(H1N1)|H1N1|2005|Swine|North America|USA|Illinois|-N/A-|delta2|1B.2.1CY099151|Influenza A Virus|A/swine/North Carolina/00839/2005(H1N1)|H1N1|10/27/2005|Swine|North America|USA|North Carolina|05-06|delta2|1B.2.1HQ896632|Influenza A Virus|A/swine/Indiana/0582-3/2009|H1N2|08/04/2009|Swine|North America|USA|Indiana|08-09|delta2|1B.2.1
CY098509|Influenza A Virus|A/swine/North Carolina/38448-1/2005|H1N1|2005|Swine|North America|USA|North Carolina|-N/A-|delta2|1B.2.1KP027593|Influenza A Virus|A/swine/Brazil/G2P2/2013(H1N2)|H1N2|06/05/2013|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KM507519|Influenza A Virus|A/swine/Brazil/185-11-7/2011|H1N2|07/06/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KF680296|Influenza A Virus|A/swine/Brazil/31_11_1/2011|H1N2|02/25/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2CY075864|Influenza A Virus|A/swine/Argentina/CIP051-StaFeN2/2010|H1N2|05/2010|Swine|South America|Argentina|-N/A-|-N/A-|delta-like|1B.2.2
DQ280236|Influenza A Virus|A/swine/Ontario/48235/04|H1N2|2004|Swine|North America|Canada|-N/A-|-N/A-|delta-like|1B.2.2JN652497|Influenza A Virus|A/swine/Iowa/A01049766/2011|H1N2|03/29/2011|Swine|North America|USA|Iowa|10-11|delta-like|1B.2.2JX975013|Influenza A Virus|A/swine/Oklahoma/A01203865/2012|H1N2|09/2012|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2JQ023762|Influenza A Virus|A/swine/Minnesota/0745/2010|H1N2|03/03/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2KC333087|Influenza A Virus|A/swine/Illinois/A01271513/2012|H1N2|10/26/2012|Swine|North America|USA|Illinois|12-13|delta1|1B.2.2.2KT924274|Influenza A Virus|A/swine/Iowa/A01795227/2015|H1N2|09/23/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2
KF922774|Influenza A Virus|A/swine/North Carolina/A01290725/2013|H1N2|11/2013|Swine|North America|USA|North Carolina|13-14|delta1|1B.2.2.2KF922759|Influenza A Virus|A/swine/Kansas/A01290646/2013|H1N2|10/14/2013|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.2KT867232|Influenza A Virus|A/swine/Iowa/A02076974/2015|H1N2|09/09/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2KF697082|Influenza A Virus|A/swine/Nebraska/A01399636/2013|H1N2|09/09/2013|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.2
JN652509|Influenza A Virus|A/swine/Arkansas/A01049917/2011|H1N2|05/03/2011|Swine|North America|USA|Arkansas|10-11|delta1|1B.2.2.2HQ896639|Influenza A Virus|A/swine/Minnesota/0913-1/2009|H1N2|09/16/2009|Swine|North America|USA|Minnesota|08-09|delta1|1B.2.2.2CY045599|Influenza A Virus|A/swine/Oklahoma/010226-17/2008(H1N2)|H1N2|2008|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2.2HM570049|Influenza A Virus|A/swine/Minnesota/03023/2010(H1N2)|H1N2|04/26/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2JN652405|Influenza A Virus|A/swine/Oklahoma/A01049500/2011|H1N2|02/03/2011|Swine|North America|USA|Oklahoma|10-11|delta1|1B.2.2.2JX657805|Influenza A Virus|A/swine/Minnesota/A01076183/2009|H1N2|12/28/2009|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1HQ896666|Influenza A Virus|A/swine/Minnesota/8721-1/2010|H1N2|04/14/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1KF704120|Influenza A Virus|A/swine/Iowa/13C094/2013|H1N2|03/26/2013|Swine|North America|USA|Iowa|12-13|delta1|1B.2.2.1KT825123|Influenza A Virus|A/swine/Iowa/A01770929/2015|H1N2|09/01/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.1KU198904|Influenza A Virus|A/swine/Nebraska/A01940285/2015|H1N2|09/02/2015|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.1KX036670|Influenza A Virus|A/swine/Illinois/A01733533/2016|H1N2|03/15/2016|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1KU695705|Influenza A Virus|A/swine/Oklahoma/A01730089/2016|H1N2|01/22/2016|Swine|North America|USA|Oklahoma|15-16|delta1|1B.2.2.1
KJ777467|Influenza A Virus|A/swine/Kansas/A01377287/2014|H1N2|04/01/2014|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.1KU379643|Influenza A Virus|A/swine/Illinois/A01896080/2015|H1N2|11/30/2015|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1
CY099207|Influenza A Virus|A/swine/Minnesota/02324/2008|H1N2|09/10/2008|Swine|North America|USA|Minnesota|-N/A-|delta1|1B.2.2.1CY115896|Influenza A Virus|A/swine/England/00003/2009|H1N2|01/12/2009|Swine|Europe|United Kingdom|-N/A-|08-09|delta-like|1B.2.2
AF085413|Influenza A Virus|A/swine/Scotland/410440/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1AF085414|Influenza A Virus|A/swine/England/438207/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1CY116159|Influenza A Virus|A/swine/England/40280/1996|H1N2|07/09/1996|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116198|Influenza A Virus|A/swine/England/448813/1994|H1N2|04/24/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.1
KR700342|Influenza A Virus|A/swine/Scotland/51190/1999|H1N2|09/30/1999|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116323|Influenza A Virus|A/swine/England/88761/1997|H1N2|02/03/1997|Swine|Europe|United Kingdom|-N/A-|96-97|Other|1B.1.1
KR700493|Influenza A Virus|A/swine/England/038712/2012|H1N2|12/05/2012|Swine|Europe|United Kingdom|-N/A-|12-13|Other|1B.1.1JF297998|Influenza A Virus|A/swine/England/1428/2009|H1N2|12/08/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1JF297997|Influenza A Virus|A/swine/England/1157/2009|H1N2|10/05/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1KR699860|Influenza A Virus|A/swine/England/058879/2011|H1N2|05/16/2011|Swine|Europe|United Kingdom|-N/A-|10-11|Other|1B.1.1
CY115912|Influenza A Virus|A/swine/England/002295/2002|H1N2|12/04/2002|Swine|Europe|United Kingdom|-N/A-|02-03|Other|1B.1.1KR700601|Influenza A Virus|A/swine/England/463180/1994|H1N2|05/12/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.2HQ660233|Influenza A Virus|A/swine/Italy/3592/1999|H1N2|1999|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2CY116487|Influenza A Virus|A/swine/Italy/172336/2001|H1N1|2001|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2
HQ660238|Influenza A Virus|A/swine/Italy/70757/2009|H1N2|2009|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KF305978|Influenza A Virus|A/swine/Italy/20333/2006|H1N2|2006|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KR700193|Influenza A Virus|A/swine/France/CotesdArmor-0198/2011|H1N2|04/11/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3KC295233|Influenza A Virus|A/swine/France/22-120255/2012|H1N2|2012|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3KJ128311|Influenza A Virus|A/swine/France/22-120390/2012|H1N2|11/16/2012|Swine|Europe|France|-N/A-|12-13|Other|1B.1.2.3KC345629|Influenza A Virus|A/swine/France/22-110153/2011|H1N2|03/07/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3
CY116367|Influenza A Virus|A/swine/Cotes d'Armor/1174/2009|H1N2|2009|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3CY116410|Influenza A Virus|A/swine/Cotes d'Armor/790/1997|H1N2|1997|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3EU053148|Influenza A Virus|A/swine/Bakum/1832/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1B.1.2.1AJ344010|Influenza A Virus|A/swine/Italy/1081/00|H1N2|2000|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.1
KR700883|Influenza A Virus|A/swine/Netherlands/De-Lutte-167A/2012|H1N2|04/25/2012|Swine|Europe|Netherlands|-N/A-|11-12|Other|1B.1.2.1CY116550|Influenza A Virus|A/swine/Spain/40564/2002(H1N2)|H1N2|2002|Swine|Europe|Spain|-N/A-|-N/A-|Other|1B.1.2.1CY116442|Influenza A Virus|A/swine/Gent/177/2002|H1N2|2002|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1B.1.2.1
KR699932|Influenza A Virus|A/swine/Belgium/Oostkamp-26/2012|H1N2|01/12/2012|Swine|Europe|Belgium|-N/A-|11-12|Other|1B.1.2.1KR700177|Influenza A Virus|A/swine/Spain/29257/2012|H1N2|01/30/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2KR700592|Influenza A Virus|A/swine/Spain/29262/2012|H1N2|01/31/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2
AF085415|Influenza A Virus|A/swine/England/690421/95|H1N2|1995|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.2KR700057|Influenza A Virus|A/swine/Denmark/10-1958-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KR700049|Influenza A Virus|A/swine/Denmark/10-1725-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
CY116531|Influenza A Virus|A/swine/Lutol/3/2000(H1N1)|H1N1|2000|Swine|Europe|Poland|-N/A-|-N/A-|Other|1C.2.3CY116356|Influenza A Virus|A/swine/Finnistere/800/2004|H1N1|2004|Swine|Europe|France|-N/A-|-N/A-|Other|1C.2.3CY085550|Influenza A Virus|A/swine/Hong Kong/NS129/2003|H1N1|02/06/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
KM028327|Influenza A Virus|A/swine/Guangxi/3612/2011|H1N1|12/11/2011|Swine|Asia|China|-N/A-|-N/A-|Other|1C.2.3KM029167|Influenza A Virus|A/swine/Hong Kong/126/2012|H1N1|01/05/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3KM029311|Influenza A Virus|A/swine/Hong Kong/NS967/2012|H1N1|03/15/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
AM920737|Influenza A Virus|A/swine/Germany/SEk1178/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.2.2GQ161124|Influenza A Virus|A/swine/Haseluenne/IDT2617/2003|H1N1|10/09/2003|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.2JQ301929|Influenza A Virus|A/swine/Spain/16/2009|H1N1|07/2009|Swine|Europe|Spain|-N/A-|08-09|Other|1C.2.2KU517792|Influenza A Virus|A/Poland/wild boar/1951718/2013|H1N1|12/12/2013|Swine|Europe|Poland|-N/A-|13-14|Other|1C.2.2KR700366|Influenza A Virus|A/swine/Germany/Reinberg-IDT14457-1/2012|H1N1|01/02/2012|Swine|Europe|Germany|-N/A-|11-12|Other|1C.2.2
CY009892|Influenza A Virus|A/swine/Spain/50047/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.2GQ161156|Influenza A Virus|A/swine/Greven/IDT2889/2004|H1N1|01/07/2004|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.1
KJ847576|Influenza A Virus|A/swine/Italy/50814/2012|H1N1|01/2012|Swine|Europe|Italy|-N/A-|11-12|Other|1C.2.1KR700891|Influenza A Virus|A/swine/Belgium/Lichtervelde-57/2013|H1N1|03/01/2013|Swine|Europe|Belgium|-N/A-|12-13|Other|1C.2.1
CY116466|Influenza A Virus|A/swine/Italy/151672-3/2003|H1N1|2003|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.2.1CY010572|Influenza A Virus|A/swine/Spain/51915/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1
KR700869|Influenza A Virus|A/swine/Netherlands/Wijhe-371/2012|H1N1|10/24/2012|Swine|Europe|Netherlands|-N/A-|12-13|Other|1C.2.1JX908073|Influenza A Virus|A/swine/Spain/03/2008|H1N1|06/01/2008|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1KR066556|Influenza A Virus|A/swine/Denmark/101081-2/2010|H1N2|05/28/2010|Swine|Europe|Denmark|-N/A-|09-10|Other|1C.2KC900284|Influenza A Virus|A/swine/Denmark/13160-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KC900282|Influenza A Virus|A/swine/Denmark/13772-1/2003|H1N1|2003|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR066560|Influenza A Virus|A/swine/Denmark/10913-1/2009|H1N1|04/2009|Swine|Europe|Denmark|-N/A-|08-09|Other|1C.2KC900270|Influenza A Virus|A/swine/Denmark/13184-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
FJ805962|Influenza A Virus|A/swine/Belgium/1/1998|H1N1|1998|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1C.2CY038023|Influenza A Virus|A/swine/Denmark/WVL9/1993|H1N1|1993|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR700640|Influenza A Virus|A/swine/England/267/2007|H1N1|02/22/2007|Swine|Europe|United Kingdom|-N/A-|06-07|Other|1C.1CY116206|Influenza A Virus|A/swine/England/453/2006|H1N1|05/05/2006|Swine|Europe|United Kingdom|-N/A-|05-06|Other|1C.1
KR701057|Influenza A Virus|A/swine/England/024079/2013|H1N1|08/21/2013|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1CY116074|Influenza A Virus|A/swine/England/26029/1998|H1N1|06/17/1998|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1
CY037999|Influenza A Virus|A/swine/Spain/WVL6/1991|H1N1|1991|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.1AJ344019|Influenza A Virus|A/swine/Italy/1498-2/97|H1N1|1997|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.1AM920728|Influenza A Virus|A/swine/Germany/Vi5698/1995|H1N1|1995|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1
KJ889364|Influenza A Virus|A/swine/Germany/S27/1981|H1N1|1981|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1AF091314|Influenza A Virus|A/swine/Netherlands/3/80|H1N1|1980|Swine|Europe|Netherlands|-N/A-|-N/A-|Other|1C.1KJ889300|Influenza A Virus|A/swine/Arnsberg/1/1979|H1N1|12/07/1979|Swine|Europe|Germany|-N/A-|79-80|Other|1C.1KT715450|Influenza A Virus|A/duck/Schleswig/21/1979|H1N1|1979|Duck/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianKT715445|Influenza A Virus|A/coot/Schleswig/2/1980|H1N1|1980|Common Coot/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianD00839|Influenza A Virus|A/duck/HK/196/1977|H1|1977|Duck/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-Avian
GU066779|Influenza A Virus|A/mallard/Marquenterre/Z237/1983(H1N1)|H1N1|1983|Mallard/Avian|Europe|France|-N/A-|-N/A-|Other|Other-AvianAB271113|Influenza A Virus|A/duck/Miyagi/66/1977|H1N1|1977|Duck/Avian|Asia|Japan|-N/A-|-N/A-|Other|Other-Avian
KP658029|Influenza A Virus|A/duck/Hainan/Q221/2012|H1N2|2012|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-AvianKP658037|Influenza A Virus|A/duck/Fujian/89/2013|H1N8|2013|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-Avian
EF679200|Influenza A Virus|A/chicken/Hong Kong/14/1976|H1N1|1976|Chicken/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-AvianCY094927|Influenza A Virus|A/duck/Victoria/2b/1980|H1N1|1980|Duck/Avian|Oceania|Australia|-N/A-|-N/A-|Other|Other-AvianCY179139|Influenza A Virus|A/thick-billed murre/Alaska/335/1976|H1N6|1976|Murre/Avian|North America|USA|Alaska|-N/A-|Other|Other-Avian
CY178994|Influenza A Virus|A/blue-winged teal/Wisconsin/336/1976|H1N1|1976|Blue-Winged Teal/Avian|North America|USA|Wisconsin|-N/A-|Other|Other-AvianCY004507|Influenza A Virus|A/mallard/ALB/201/1998|H1N1|08/11/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
AF091310|Influenza A Virus|A/turkey/Minnesota/1661/81|H1N1|1981|Turkey/Avian|North America|USA|Minnesota|-N/A-|Other|Other-AvianCY136973|Influenza A Virus|A/mallard/Alberta/119/1998|H1N1|08/06/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
CY146085|Influenza A Virus|A/ruddy turnstone/New Jersey/AI09-618/2009|H1N9|05/26/2009|Ruddy Turnstone/Avian|North America|USA|New Jersey|08-09|Other|Other-AvianCY186648|Influenza A Virus|A/blue-winged teal/Illinois/12OS4788/2012|H1N1|10/20/2012|Blue-Winged Teal/Avian|North America|USA|Illinois|12-13|Other|Other-Avian
0.1
LEGENDUS Clade
LEGENDGlobal Clade
A B C
Sequence Identifier
Global Swine H1 Clade Classification (SOP) US Swine H1 Clade Classification (SOP)
Clade Assignment Unified Tree Tree Viewer Clade Assignment Unified Tree Tree Viewer
2016054341 1B.2.2.1 Download View Tree delta1 Download View Tree
400183 1B.2.1 Download View Tree delta2 Download View Tree
63709BNot H1 Sequence. Unable to determine classification.
Not H1 Sequence. Unable to determine classification.
33325Not H1 Sequence. Unable to determine classification.
Not H1 Sequence. Unable to determine classification.
Swine H1 Clade Classification Report
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Release Date: Sep 29, 2016
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials.This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
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Swine H1 Clade Classification Report
Sequence Identifier Clade Assignment Unified Tree Tree Viewer
2016054341|HA|swine|USA|Indiana|2016 delta1 Download View Tree
402352|HA|swine|Mexico||2010 npdm Download View Tree
63709A|HA|swine|USA|North_Carolina|2015 gamma Download View Tree
400183|HA|swine|USA|Iowa|2015 delta2 Download View Tree
74112|HA|swine|USA|Indiana|2016 delta1 Download View Tree
17581|HA|swine|USA|Illinois|2015 Not H1 Sequence - Unable to determine classification
404009|HA|swine|Canada|Alberta|2015 Not H1 Sequence - Unable to determine classification
63709B|HA|swine|USA|North_Carolina|2015 Not H1 Sequence - Unable to determine classification
33325|HA|swine|USA|Missouri|2015 Not H1 Sequence - Unable to determine classification
Home Swine H1 Clade Classification Results
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• Rename “Swine H1 Clade” to “US Swine H1 Clade”• Add SOP for US Swine H1 Clade• Add “Global Swine H1 Clade (SOP)”
GU052518|Influenza A Virus|A/chicken/Scotland/1959|H5N1|1959|Chicken/Avian|-N/A-|United Kingdom|-N/A-|-N/A-|Outgroup|OutgroupCY147406|Influenza A Virus|A/swine/JY2/1931(H1N1)|H1N1|1931|Swine|-N/A-|Unknown|-N/A-|-N/A-|alpha|1A.1EU139824|Influenza A Virus|A/swine/Iowa/1945|H1N1|1945|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY027291|Influenza A Virus|A/swine/Ohio/23/1935|H1N1|1935|Swine|North America|USA|Ohio|-N/A-|alpha|1A.1
CY022437|Influenza A Virus|A/swine/Wisconsin/2/1970|H1N1|1970|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1EU139826|Influenza A Virus|A/swine/Iowa/1973|H1N1|1973|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
AB620186|Influenza A Virus|A/swine/Saraburi/NIAH116625-17/2009|H1N1|11/2009|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1CY022421|Influenza A Virus|A/swine/Wisconsin/11/1980|H1N1|1980|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1
JN043430|Influenza A Virus|A/swine/Korea/VDS3/2009|H1N1|09/2009|Swine|Asia|South Korea|-N/A-|08-09|alpha|1A.1.1JF713826|Influenza A Virus|A/swine/QC/370/2009|H1N1|05/08/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF713904|Influenza A Virus|A/swine/QC/1697-2/2009|H1N1|05/15/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF714129|Influenza A Virus|A/swine/QC/729-B/2009|H1N1|09/04/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1CY194974|Influenza A Virus|A/swine/Manitoba/D0290/2013|H1N2|11/20/2013|Swine|North America|Canada|-N/A-|13-14|alpha|1A.1.1CY195551|Influenza A Virus|A/swine/Manitoba/D0378/2015|H1N2|04/14/2015|Swine|North America|Canada|-N/A-|14-15|alpha|1A.1.1CY194365|Influenza A Virus|A/swine/Manitoba/D0175/2012|H1N1|10/23/2012|Swine|North America|Canada|-N/A-|12-13|alpha|1A.1.1
CY085590|Influenza A Virus|A/swine/Hong Kong/1304/2003|H1N2|09/28/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.1FJ752514|Influenza A Virus|A/swine/Taichung/E3/1992(H1N1)|H1N1|09/08/1992|Swine|Asia|Taiwan|-N/A-|-N/A-|alpha|1A.1.1
CY028788|Influenza A Virus|A/swine/Iowa/1/1986|H1N1|1986|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY022317|Influenza A Virus|A/swine/Iowa/1/1985|H1N1|1985|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
KJ162037|Influenza A Virus|A/swine/Thailand/CU-S3350N/2012|H1N1|02/13/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KM355368|Influenza A Virus|A/swine/Thailand/CU-S3631N/2012|H1N2|12/06/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
AB434288|Influenza A Virus|A/swine/Ratchaburi/NIAH1481/2000|H1N1|2000|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KC610049|Influenza A Virus|A/swine/Thailand/CU-SPL4/2010|H1N1|08/10/2010|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KJ162044|Influenza A Virus|A/swine/Thailand/CU-S3340N/2012|H1N1|01/24/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
GQ229261|Influenza A Virus|A/swine/Hong Kong/NS837/2001(H1N1)|H1N1|04/09/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1CY027155|Influenza A Virus|A/swine/Iowa/24297/1991|H1N1|1991|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY028780|Influenza A Virus|A/swine/California/T9001707/1991|H1N1|1991|Swine|North America|USA|California|-N/A-|alpha|1A.1KF057118|Influenza A Virus|A/swine/Beijing/216/1992(H1N1)|H1N1|1992|Swine|Asia|China|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085073|Influenza A Virus|A/swine/Hong Kong/1286/1993|H1N1|11/29/1993|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3
CY085350|Influenza A Virus|A/swine/Hong Kong/NS143/2000|H1N1|09/15/2000|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085478|Influenza A Virus|A/swine/Hong Kong/NS1680/2001|H1N1|12/28/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.3
JN375115|Influenza A Virus|A/swine/Guangdong/603/2010(H1N2)|H1N2|02/27/2010|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3KM029815|Influenza A Virus|A/swine/Guangdong/NS3155/2012|H1N2|09/13/2012|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3
CY087088|Influenza A Virus|A/swine/Hong Kong/2503/1994|H1N1|04/25/1994|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1GU086033|Influenza A Virus|A/swine/Guangdong/446/2006(H1N1)|H1N1|2006|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1FJ536842|Influenza A Virus|A/swine/Guangdong/1/2005|H1N1|2005|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1
KU976666|Influenza A Virus|A/swine/Mexico/AVX3/2011|H1N1|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976612|Influenza A Virus|A/swine/Mexico/AVX42/2012|H1N1|11/26/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976570|Influenza A Virus|A/swine/Mexico/AVX11/2012|H1N1|03/13/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1
CY159249|Influenza A Virus|A/swine/Minnesota/SG1470/2004|H1N1|08/13/2004|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2KU752363|Influenza A Virus|A/swine/Oklahoma/A01730424/2016|H1N1|01/22/2016|Swine|North America|USA|Oklahoma|15-16|beta|1A.2KF712462|Influenza A Virus|A/swine/Nebraska/A01399492/2013|H1N1|09/05/2013|Swine|North America|USA|Nebraska|-N/A-|beta|1A.2KC445220|Influenza A Virus|A/swine/Nebraska/A01277829/2012|H1N1|11/27/2012|Swine|North America|USA|Nebraska|12-13|beta|1A.2
AF455679|Influenza A Virus|A/Swine/Iowa/930/01|H1N2|2001|Swine|North America|USA|Iowa|-N/A-|beta|1A.2AF455678|Influenza A Virus|A/Swine/Minnesota/55551/00|H1N2|2000|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2CY098476|Influenza A Virus|A/swine/North Carolina/47834/2000|H1N1|2000|Swine|North America|USA|North Carolina|-N/A-|beta|1A.2CY040545|Influenza A Virus|A/swine/North Carolina/7571/2003|H1N1|2003|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3CY157935|Influenza A Virus|A/swine/North Carolina/01169/2006|H1N2|06/22/2006|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3
CY157743|Influenza A Virus|A/swine/Tennessee/00264/2004|H1N1|03/11/2004|Swine|North America|USA|Tennessee|03-04|gamma2|1A.3JQ906888|Influenza A Virus|A/swine/Minnesota/A01201429/2011|H1N2|01/27/2011|Swine|North America|USA|Minnesota|10-11|gamma2|1A.3.2
CY159613|Influenza A Virus|A/swine/Texas/SG1187/2004|H1N1|02/25/2004|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY159761|Influenza A Virus|A/swine/Texas/00525/2005|H1N1|03/08/2005|Swine|North America|USA|Texas|04-05|gamma2|1A.3.2
KC134375|Influenza A Virus|A/swine/Illinois/A01203922/2012|H1N1|10/2012|Swine|North America|USA|Illinois|12-13|gamma2|1A.3.2JQ922326|Influenza A Virus|A/swine/Oklahoma/A01134908/2011|H1N1|03/24/2011|Swine|North America|USA|Oklahoma|10-11|gamma2|1A.3.2
CY157631|Influenza A Virus|A/swine/Texas/00195/2003|H1N1|10/15/2003|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY098516|Influenza A Virus|A/swine/North Carolina/18161/2002|H1N1|2002|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3.3CY157647|Influenza A Virus|A/swine/Kentucky/SG1167/2003|H1N1|01/22/2003|Swine|North America|USA|Kentucky|02-03|gamma-npdm-like|1A.3.3
AF250124|Influenza A Virus|A/Swine/Indiana/9K035/99|H1N2|1999|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3AF455681|Influenza A Virus|A/Swine/Illinois/100085A/01|H1N2|2001|Swine|North America|USA|Illinois|-N/A-|gamma|1A.3.3.3
KJ640283|Influenza A Virus|A/swine/Indiana/13TOSU1052/2013|H1N2|07/01/2013|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3KX036706|Influenza A Virus|A/swine/Illinois/A01733206/2016|H1N1|03/10/2016|Swine|North America|USA|Illinois|15-16|gamma|1A.3.3.3KT767634|Influenza A Virus|A/swine/Iowa/A02025552/2015|H1N1|08/13/2015|Swine|North America|USA|Iowa|-N/A-|gamma|1A.3.3.3
CY107827|Influenza A Virus|A/swine/Korea/1130/2009|H1N2|01/2009|Swine|Asia|South Korea|-N/A-|08-09|gamma|1A.3.3.3AF455675|Influenza A Virus|A/Swine/Ohio/891/01|H1N2|2001|Swine|North America|USA|Ohio|-N/A-|gamma|1A.3.3.3AF455680|Influenza A Virus|A/Swine/Indiana/P12439/00|H1N2|2000|Swine|North America|USA|Indiana|-N/A-|npdm|1A.3.3
KU976628|Influenza A Virus|A/swine/Mexico/AVX27/2012|H1N1|08/02/2012|Swine|North America|Mexico|-N/A-|-N/A-|npdm|1A.3.3.2HQ424885|Influenza A Virus|A/swine/Iowa/44837-1/2009(H1N1)|H1N1|11/08/2009|Swine|North America|USA|Iowa|09-10|npdm|1A.3.3.2
JF279888|Influenza A Virus|A/swine/Costa Rica/000125-14/2010|H1N1|11/01/2010|Swine|North America|Costa Rica|-N/A-|-N/A-|npdm|1A.3.3.2KC222556|Influenza A Virus|A/swine/Freren/IDT13837-1/2011|H1N2|08/31/2011|Swine|Europe|Germany|-N/A-|-N/A-|npdm|1A.3.3.2CY114996|Influenza A Virus|A/swine/Pennsylvania/A01134526/2011|H1N1|02/14/2011|Swine|North America|USA|Pennsylvania|10-11|npdm|1A.3.3.2HQ291549|Influenza A Virus|A/swine/IL/27486-2/2010(H1N1)|H1N1|06/02/2010|Swine|North America|USA|Illinois|-N/A-|npdm|1A.3.3.2KU666855|Influenza A Virus|A/swine/Nebraska/A01729687/2016|H1N1|01/15/2016|Swine|North America|USA|Nebraska|15-16|npdm|1A.3.3.2
CY057462|Influenza A Virus|A/Wisconsin/629-D00839/2009(H1N1)|H1N1|09/22/2009|Human|North America|USA|Wisconsin|08-09|npdm|NAJF714082|Influenza A Virus|A/swine/MB/36/2009|H1N1|10/06/2009|Swine|North America|Canada|-N/A-|09-10|npdm|1A.3.3.2KM027967|Influenza A Virus|A/swine/Guangxi/NS2777/2010|H1N2|11/07/2010|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3KM028087|Influenza A Virus|A/swine/Guangxi/2891/2011|H1N2|10/09/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3
GQ229333|Influenza A Virus|A/swine/Hong Kong/1562/2005(H1N2)|H1N2|11/11/2005|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085998|Influenza A Virus|A/swine/Hong Kong/NS252/2009|H1N2|03/19/2009|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1KM027639|Influenza A Virus|A/swine/Guangdong/3583/2011|H1N2|10/27/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
GQ229365|Influenza A Virus|A/swine/Hong Kong/NS623/2002(H1N2)|H1N2|07/09/2002|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085622|Influenza A Virus|A/swine/Hong Kong/NS30/2004|H1N2|01/06/2004|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1EF556199|Influenza A Virus|A/swine/Guangxi/13/2006|H1N2|2006|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
KM028935|Influenza A Virus|A/swine/Hong Kong/4083/2011|H1N2|10/20/2011|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1GQ229309|Influenza A Virus|A/swine/Hong Kong/78/2003(H1N2)|H1N2|01/23/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|gamma-npdm-like|1A.3.3
AF116575|Influenza A Virus|A/Brevig Mission/1/1918|H1N1|1918|Human|North America|USA|Alaska|-N/A-|Other|Other-HumanD00837|Influenza A Virus|A/swine/Cambridge/1939|H1N1|1939|Swine|Europe|United Kingdom|-N/A-|-N/A-|ND|Other-Human
CY019755|Influenza A Virus|A/Memphis/49/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY021029|Influenza A Virus|A/Baylor/4052/1981|H1N1|1981|Human|North America|USA|Texas|-N/A-|Other|Other-HumanCY017235|Influenza A Virus|A/Memphis/29/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY020189|Influenza A Virus|A/New Zealand/7/1983|H1N1|1983|Human|Oceania|New Zealand|-N/A-|-N/A-|Other|Other-HumanCY020565|Influenza A Virus|A/Texas/2922-3/1986|H1N1|1986|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2DQ508873|Influenza A Virus|A/Taiwan/01/1986|H1N1|1986|Human|Asia|Taiwan|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY045852|Influenza A Virus|A/Siena/4/1987(H1N1)|H1N1|1987|Human|Europe|Italy|-N/A-|-N/A-|delta-like|Other-Human-1B.2JX477159|Influenza A Virus|A/Florida/2/1993(H1N1)|H1N1|1993|Human|North America|USA|Florida|-N/A-|delta-like|Other-Human-1B.2JX477164|Influenza A Virus|A/Wellington/47/1992|H1N1|1992|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125084|Influenza A Virus|A/Moscow/13/1998|H1N1|1998|Human|Europe|Russia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY117691|Influenza A Virus|A/Malaysia/06768/1995|H1N1|05/16/1995|Human|Asia|Malaysia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY016963|Influenza A Virus|A/New York/633/1995|H1N1|12/15/1995|Human|North America|USA|New York|95-96|delta-like|Other-Human-1B.2
CY009316|Influenza A Virus|A/Texas/36/91|H1N1|1991|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2CY033614|Influenza A Virus|A/Beijing/262/1995|H1N1|1995|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125076|Influenza A Virus|A/Shanghai/2/1997|H1N1|1997|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2GU646016|Influenza A Virus|A/swine/Fujian/0325/2008|H1N1|03/25/2008|Swine|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2EU097934|Influenza A Virus|A/Denmark/3/2001|H1N1|2001|Human|Europe|Denmark|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KU976716|Influenza A Virus|A/swine/Mexico/AVX7/2011|H1N2|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2KU976748|Influenza A Virus|A/swine/Mexico/AVX49/2013|H1N2|03/25/2013|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KP456570|Influenza A Virus|A/Canterbury/23/2000|H1N1|08/03/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY022149|Influenza A Virus|A/Auckland/579/2000|H1N1|08/30/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY086839|Influenza A Virus|A/swine/Hong Kong/1435/2006|H1N1|10/12/2006|Swine|Asia|Hong Kong|-N/A-|-N/A-|delta-like|Other-Human-1B.2AB628080|Influenza A Virus|A/swine/Binh Doung/02_16/2010|H1N2|2010|Swine|Asia|Viet Nam|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY104020|Influenza A Virus|A/HaNoi/BM898/2003|H1N1|10/14/2003|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2-delta-like|Other-Human-1B.2CY002984|Influenza A Virus|A/New York/221/2003|H1N1|03/21/2003|Human|North America|USA|New York|02-03|delta2|Other-Human-1B.2CY104822|Influenza A Virus|A/Hanoi/ISBM31/2005|H1N1|04/08/2005|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2|Other-Human-1B.2CY075856|Influenza A Virus|A/swine/Argentina/CIP051-BsAs76/2009|H1N1|10/2009|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2KR863479|Influenza A Virus|A/swine/Argentina/CIP051-C05-M1-1/2012|H1N2|12/05/2012|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2
HQ896649|Influenza A Virus|A/swine/Minnesota/6004-1/2009|H1N1|11/19/2009|Swine|North America|USA|Minnesota|09-10|delta2|Other-Human-1B.2KP457752|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|NAEU100706|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|Other-Human-1B.2CY159409|Influenza A Virus|A/swine/North Carolina/01550/2007|H1N1|04/04/2007|Swine|North America|USA|North Carolina|06-07|delta2|1B.2.1
KU598293|Influenza A Virus|A/swine/Indiana/A01729197/2016|H1N2|01/07/2016|Swine|North America|USA|Indiana|15-16|delta2|1B.2.1KU752378|Influenza A Virus|A/swine/North Carolina/A01730690/2016|H1N2|01/28/2016|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1KT000052|Influenza A Virus|A/swine/North Carolina/A02077509/2015|H1N2|05/06/2015|Swine|North America|USA|North Carolina|14-15|delta2|1B.2.1KU160750|Influenza A Virus|A/swine/North Carolina/A01945825/2015|H1N2|10/22/2015|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1
FJ638298|Influenza A Virus|A/swine/IL/00685/2005(H1N1)|H1N1|2005|Swine|North America|USA|Illinois|-N/A-|delta2|1B.2.1CY099151|Influenza A Virus|A/swine/North Carolina/00839/2005(H1N1)|H1N1|10/27/2005|Swine|North America|USA|North Carolina|05-06|delta2|1B.2.1HQ896632|Influenza A Virus|A/swine/Indiana/0582-3/2009|H1N2|08/04/2009|Swine|North America|USA|Indiana|08-09|delta2|1B.2.1
CY098509|Influenza A Virus|A/swine/North Carolina/38448-1/2005|H1N1|2005|Swine|North America|USA|North Carolina|-N/A-|delta2|1B.2.1KP027593|Influenza A Virus|A/swine/Brazil/G2P2/2013(H1N2)|H1N2|06/05/2013|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KM507519|Influenza A Virus|A/swine/Brazil/185-11-7/2011|H1N2|07/06/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KF680296|Influenza A Virus|A/swine/Brazil/31_11_1/2011|H1N2|02/25/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2CY075864|Influenza A Virus|A/swine/Argentina/CIP051-StaFeN2/2010|H1N2|05/2010|Swine|South America|Argentina|-N/A-|-N/A-|delta-like|1B.2.2
DQ280236|Influenza A Virus|A/swine/Ontario/48235/04|H1N2|2004|Swine|North America|Canada|-N/A-|-N/A-|delta-like|1B.2.2JN652497|Influenza A Virus|A/swine/Iowa/A01049766/2011|H1N2|03/29/2011|Swine|North America|USA|Iowa|10-11|delta-like|1B.2.2JX975013|Influenza A Virus|A/swine/Oklahoma/A01203865/2012|H1N2|09/2012|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2JQ023762|Influenza A Virus|A/swine/Minnesota/0745/2010|H1N2|03/03/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2KC333087|Influenza A Virus|A/swine/Illinois/A01271513/2012|H1N2|10/26/2012|Swine|North America|USA|Illinois|12-13|delta1|1B.2.2.2KT924274|Influenza A Virus|A/swine/Iowa/A01795227/2015|H1N2|09/23/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2
KF922774|Influenza A Virus|A/swine/North Carolina/A01290725/2013|H1N2|11/2013|Swine|North America|USA|North Carolina|13-14|delta1|1B.2.2.2KF922759|Influenza A Virus|A/swine/Kansas/A01290646/2013|H1N2|10/14/2013|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.2KT867232|Influenza A Virus|A/swine/Iowa/A02076974/2015|H1N2|09/09/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2KF697082|Influenza A Virus|A/swine/Nebraska/A01399636/2013|H1N2|09/09/2013|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.2
JN652509|Influenza A Virus|A/swine/Arkansas/A01049917/2011|H1N2|05/03/2011|Swine|North America|USA|Arkansas|10-11|delta1|1B.2.2.2HQ896639|Influenza A Virus|A/swine/Minnesota/0913-1/2009|H1N2|09/16/2009|Swine|North America|USA|Minnesota|08-09|delta1|1B.2.2.2CY045599|Influenza A Virus|A/swine/Oklahoma/010226-17/2008(H1N2)|H1N2|2008|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2.2HM570049|Influenza A Virus|A/swine/Minnesota/03023/2010(H1N2)|H1N2|04/26/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2JN652405|Influenza A Virus|A/swine/Oklahoma/A01049500/2011|H1N2|02/03/2011|Swine|North America|USA|Oklahoma|10-11|delta1|1B.2.2.2JX657805|Influenza A Virus|A/swine/Minnesota/A01076183/2009|H1N2|12/28/2009|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1HQ896666|Influenza A Virus|A/swine/Minnesota/8721-1/2010|H1N2|04/14/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1KF704120|Influenza A Virus|A/swine/Iowa/13C094/2013|H1N2|03/26/2013|Swine|North America|USA|Iowa|12-13|delta1|1B.2.2.1KT825123|Influenza A Virus|A/swine/Iowa/A01770929/2015|H1N2|09/01/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.1KU198904|Influenza A Virus|A/swine/Nebraska/A01940285/2015|H1N2|09/02/2015|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.1KX036670|Influenza A Virus|A/swine/Illinois/A01733533/2016|H1N2|03/15/2016|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1KU695705|Influenza A Virus|A/swine/Oklahoma/A01730089/2016|H1N2|01/22/2016|Swine|North America|USA|Oklahoma|15-16|delta1|1B.2.2.1
KJ777467|Influenza A Virus|A/swine/Kansas/A01377287/2014|H1N2|04/01/2014|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.1KU379643|Influenza A Virus|A/swine/Illinois/A01896080/2015|H1N2|11/30/2015|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1
CY099207|Influenza A Virus|A/swine/Minnesota/02324/2008|H1N2|09/10/2008|Swine|North America|USA|Minnesota|-N/A-|delta1|1B.2.2.1CY115896|Influenza A Virus|A/swine/England/00003/2009|H1N2|01/12/2009|Swine|Europe|United Kingdom|-N/A-|08-09|delta-like|1B.2.2
AF085413|Influenza A Virus|A/swine/Scotland/410440/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1AF085414|Influenza A Virus|A/swine/England/438207/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1CY116159|Influenza A Virus|A/swine/England/40280/1996|H1N2|07/09/1996|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116198|Influenza A Virus|A/swine/England/448813/1994|H1N2|04/24/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.1
KR700342|Influenza A Virus|A/swine/Scotland/51190/1999|H1N2|09/30/1999|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116323|Influenza A Virus|A/swine/England/88761/1997|H1N2|02/03/1997|Swine|Europe|United Kingdom|-N/A-|96-97|Other|1B.1.1
KR700493|Influenza A Virus|A/swine/England/038712/2012|H1N2|12/05/2012|Swine|Europe|United Kingdom|-N/A-|12-13|Other|1B.1.1JF297998|Influenza A Virus|A/swine/England/1428/2009|H1N2|12/08/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1JF297997|Influenza A Virus|A/swine/England/1157/2009|H1N2|10/05/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1KR699860|Influenza A Virus|A/swine/England/058879/2011|H1N2|05/16/2011|Swine|Europe|United Kingdom|-N/A-|10-11|Other|1B.1.1
CY115912|Influenza A Virus|A/swine/England/002295/2002|H1N2|12/04/2002|Swine|Europe|United Kingdom|-N/A-|02-03|Other|1B.1.1KR700601|Influenza A Virus|A/swine/England/463180/1994|H1N2|05/12/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.2HQ660233|Influenza A Virus|A/swine/Italy/3592/1999|H1N2|1999|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2CY116487|Influenza A Virus|A/swine/Italy/172336/2001|H1N1|2001|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2
HQ660238|Influenza A Virus|A/swine/Italy/70757/2009|H1N2|2009|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KF305978|Influenza A Virus|A/swine/Italy/20333/2006|H1N2|2006|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KR700193|Influenza A Virus|A/swine/France/CotesdArmor-0198/2011|H1N2|04/11/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3KC295233|Influenza A Virus|A/swine/France/22-120255/2012|H1N2|2012|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3KJ128311|Influenza A Virus|A/swine/France/22-120390/2012|H1N2|11/16/2012|Swine|Europe|France|-N/A-|12-13|Other|1B.1.2.3KC345629|Influenza A Virus|A/swine/France/22-110153/2011|H1N2|03/07/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3
CY116367|Influenza A Virus|A/swine/Cotes d'Armor/1174/2009|H1N2|2009|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3CY116410|Influenza A Virus|A/swine/Cotes d'Armor/790/1997|H1N2|1997|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3EU053148|Influenza A Virus|A/swine/Bakum/1832/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1B.1.2.1AJ344010|Influenza A Virus|A/swine/Italy/1081/00|H1N2|2000|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.1
KR700883|Influenza A Virus|A/swine/Netherlands/De-Lutte-167A/2012|H1N2|04/25/2012|Swine|Europe|Netherlands|-N/A-|11-12|Other|1B.1.2.1CY116550|Influenza A Virus|A/swine/Spain/40564/2002(H1N2)|H1N2|2002|Swine|Europe|Spain|-N/A-|-N/A-|Other|1B.1.2.1CY116442|Influenza A Virus|A/swine/Gent/177/2002|H1N2|2002|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1B.1.2.1
KR699932|Influenza A Virus|A/swine/Belgium/Oostkamp-26/2012|H1N2|01/12/2012|Swine|Europe|Belgium|-N/A-|11-12|Other|1B.1.2.1KR700177|Influenza A Virus|A/swine/Spain/29257/2012|H1N2|01/30/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2KR700592|Influenza A Virus|A/swine/Spain/29262/2012|H1N2|01/31/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2
AF085415|Influenza A Virus|A/swine/England/690421/95|H1N2|1995|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.2KR700057|Influenza A Virus|A/swine/Denmark/10-1958-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KR700049|Influenza A Virus|A/swine/Denmark/10-1725-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
CY116531|Influenza A Virus|A/swine/Lutol/3/2000(H1N1)|H1N1|2000|Swine|Europe|Poland|-N/A-|-N/A-|Other|1C.2.3CY116356|Influenza A Virus|A/swine/Finnistere/800/2004|H1N1|2004|Swine|Europe|France|-N/A-|-N/A-|Other|1C.2.3CY085550|Influenza A Virus|A/swine/Hong Kong/NS129/2003|H1N1|02/06/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
KM028327|Influenza A Virus|A/swine/Guangxi/3612/2011|H1N1|12/11/2011|Swine|Asia|China|-N/A-|-N/A-|Other|1C.2.3KM029167|Influenza A Virus|A/swine/Hong Kong/126/2012|H1N1|01/05/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3KM029311|Influenza A Virus|A/swine/Hong Kong/NS967/2012|H1N1|03/15/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
AM920737|Influenza A Virus|A/swine/Germany/SEk1178/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.2.2GQ161124|Influenza A Virus|A/swine/Haseluenne/IDT2617/2003|H1N1|10/09/2003|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.2JQ301929|Influenza A Virus|A/swine/Spain/16/2009|H1N1|07/2009|Swine|Europe|Spain|-N/A-|08-09|Other|1C.2.2KU517792|Influenza A Virus|A/Poland/wild boar/1951718/2013|H1N1|12/12/2013|Swine|Europe|Poland|-N/A-|13-14|Other|1C.2.2KR700366|Influenza A Virus|A/swine/Germany/Reinberg-IDT14457-1/2012|H1N1|01/02/2012|Swine|Europe|Germany|-N/A-|11-12|Other|1C.2.2
CY009892|Influenza A Virus|A/swine/Spain/50047/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.2GQ161156|Influenza A Virus|A/swine/Greven/IDT2889/2004|H1N1|01/07/2004|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.1
KJ847576|Influenza A Virus|A/swine/Italy/50814/2012|H1N1|01/2012|Swine|Europe|Italy|-N/A-|11-12|Other|1C.2.1KR700891|Influenza A Virus|A/swine/Belgium/Lichtervelde-57/2013|H1N1|03/01/2013|Swine|Europe|Belgium|-N/A-|12-13|Other|1C.2.1
CY116466|Influenza A Virus|A/swine/Italy/151672-3/2003|H1N1|2003|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.2.1CY010572|Influenza A Virus|A/swine/Spain/51915/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1
KR700869|Influenza A Virus|A/swine/Netherlands/Wijhe-371/2012|H1N1|10/24/2012|Swine|Europe|Netherlands|-N/A-|12-13|Other|1C.2.1JX908073|Influenza A Virus|A/swine/Spain/03/2008|H1N1|06/01/2008|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1KR066556|Influenza A Virus|A/swine/Denmark/101081-2/2010|H1N2|05/28/2010|Swine|Europe|Denmark|-N/A-|09-10|Other|1C.2KC900284|Influenza A Virus|A/swine/Denmark/13160-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KC900282|Influenza A Virus|A/swine/Denmark/13772-1/2003|H1N1|2003|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR066560|Influenza A Virus|A/swine/Denmark/10913-1/2009|H1N1|04/2009|Swine|Europe|Denmark|-N/A-|08-09|Other|1C.2KC900270|Influenza A Virus|A/swine/Denmark/13184-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
FJ805962|Influenza A Virus|A/swine/Belgium/1/1998|H1N1|1998|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1C.2CY038023|Influenza A Virus|A/swine/Denmark/WVL9/1993|H1N1|1993|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR700640|Influenza A Virus|A/swine/England/267/2007|H1N1|02/22/2007|Swine|Europe|United Kingdom|-N/A-|06-07|Other|1C.1CY116206|Influenza A Virus|A/swine/England/453/2006|H1N1|05/05/2006|Swine|Europe|United Kingdom|-N/A-|05-06|Other|1C.1
KR701057|Influenza A Virus|A/swine/England/024079/2013|H1N1|08/21/2013|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1CY116074|Influenza A Virus|A/swine/England/26029/1998|H1N1|06/17/1998|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1
CY037999|Influenza A Virus|A/swine/Spain/WVL6/1991|H1N1|1991|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.1AJ344019|Influenza A Virus|A/swine/Italy/1498-2/97|H1N1|1997|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.1AM920728|Influenza A Virus|A/swine/Germany/Vi5698/1995|H1N1|1995|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1
KJ889364|Influenza A Virus|A/swine/Germany/S27/1981|H1N1|1981|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1AF091314|Influenza A Virus|A/swine/Netherlands/3/80|H1N1|1980|Swine|Europe|Netherlands|-N/A-|-N/A-|Other|1C.1KJ889300|Influenza A Virus|A/swine/Arnsberg/1/1979|H1N1|12/07/1979|Swine|Europe|Germany|-N/A-|79-80|Other|1C.1KT715450|Influenza A Virus|A/duck/Schleswig/21/1979|H1N1|1979|Duck/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianKT715445|Influenza A Virus|A/coot/Schleswig/2/1980|H1N1|1980|Common Coot/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianD00839|Influenza A Virus|A/duck/HK/196/1977|H1|1977|Duck/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-Avian
GU066779|Influenza A Virus|A/mallard/Marquenterre/Z237/1983(H1N1)|H1N1|1983|Mallard/Avian|Europe|France|-N/A-|-N/A-|Other|Other-AvianAB271113|Influenza A Virus|A/duck/Miyagi/66/1977|H1N1|1977|Duck/Avian|Asia|Japan|-N/A-|-N/A-|Other|Other-Avian
KP658029|Influenza A Virus|A/duck/Hainan/Q221/2012|H1N2|2012|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-AvianKP658037|Influenza A Virus|A/duck/Fujian/89/2013|H1N8|2013|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-Avian
EF679200|Influenza A Virus|A/chicken/Hong Kong/14/1976|H1N1|1976|Chicken/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-AvianCY094927|Influenza A Virus|A/duck/Victoria/2b/1980|H1N1|1980|Duck/Avian|Oceania|Australia|-N/A-|-N/A-|Other|Other-AvianCY179139|Influenza A Virus|A/thick-billed murre/Alaska/335/1976|H1N6|1976|Murre/Avian|North America|USA|Alaska|-N/A-|Other|Other-Avian
CY178994|Influenza A Virus|A/blue-winged teal/Wisconsin/336/1976|H1N1|1976|Blue-Winged Teal/Avian|North America|USA|Wisconsin|-N/A-|Other|Other-AvianCY004507|Influenza A Virus|A/mallard/ALB/201/1998|H1N1|08/11/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
AF091310|Influenza A Virus|A/turkey/Minnesota/1661/81|H1N1|1981|Turkey/Avian|North America|USA|Minnesota|-N/A-|Other|Other-AvianCY136973|Influenza A Virus|A/mallard/Alberta/119/1998|H1N1|08/06/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
CY146085|Influenza A Virus|A/ruddy turnstone/New Jersey/AI09-618/2009|H1N9|05/26/2009|Ruddy Turnstone/Avian|North America|USA|New Jersey|08-09|Other|Other-AvianCY186648|Influenza A Virus|A/blue-winged teal/Illinois/12OS4788/2012|H1N1|10/20/2012|Blue-Winged Teal/Avian|North America|USA|Illinois|12-13|Other|Other-Avian
0.1
GU052518|Influenza A Virus|A/chicken/Scotland/1959|H5N1|1959|Chicken/Avian|-N/A-|United Kingdom|-N/A-|-N/A-|Outgroup|OutgroupCY147406|Influenza A Virus|A/swine/JY2/1931(H1N1)|H1N1|1931|Swine|-N/A-|Unknown|-N/A-|-N/A-|alpha|1A.1EU139824|Influenza A Virus|A/swine/Iowa/1945|H1N1|1945|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY027291|Influenza A Virus|A/swine/Ohio/23/1935|H1N1|1935|Swine|North America|USA|Ohio|-N/A-|alpha|1A.1
CY022437|Influenza A Virus|A/swine/Wisconsin/2/1970|H1N1|1970|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1EU139826|Influenza A Virus|A/swine/Iowa/1973|H1N1|1973|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
AB620186|Influenza A Virus|A/swine/Saraburi/NIAH116625-17/2009|H1N1|11/2009|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1CY022421|Influenza A Virus|A/swine/Wisconsin/11/1980|H1N1|1980|Swine|North America|USA|Wisconsin|-N/A-|alpha|1A.1
JN043430|Influenza A Virus|A/swine/Korea/VDS3/2009|H1N1|09/2009|Swine|Asia|South Korea|-N/A-|08-09|alpha|1A.1.1JF713826|Influenza A Virus|A/swine/QC/370/2009|H1N1|05/08/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF713904|Influenza A Virus|A/swine/QC/1697-2/2009|H1N1|05/15/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1JF714129|Influenza A Virus|A/swine/QC/729-B/2009|H1N1|09/04/2009|Swine|North America|Canada|-N/A-|08-09|alpha|1A.1.1CY194974|Influenza A Virus|A/swine/Manitoba/D0290/2013|H1N2|11/20/2013|Swine|North America|Canada|-N/A-|13-14|alpha|1A.1.1CY195551|Influenza A Virus|A/swine/Manitoba/D0378/2015|H1N2|04/14/2015|Swine|North America|Canada|-N/A-|14-15|alpha|1A.1.1CY194365|Influenza A Virus|A/swine/Manitoba/D0175/2012|H1N1|10/23/2012|Swine|North America|Canada|-N/A-|12-13|alpha|1A.1.1
CY085590|Influenza A Virus|A/swine/Hong Kong/1304/2003|H1N2|09/28/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.1FJ752514|Influenza A Virus|A/swine/Taichung/E3/1992(H1N1)|H1N1|09/08/1992|Swine|Asia|Taiwan|-N/A-|-N/A-|alpha|1A.1.1
CY028788|Influenza A Virus|A/swine/Iowa/1/1986|H1N1|1986|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY022317|Influenza A Virus|A/swine/Iowa/1/1985|H1N1|1985|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1
KJ162037|Influenza A Virus|A/swine/Thailand/CU-S3350N/2012|H1N1|02/13/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KM355368|Influenza A Virus|A/swine/Thailand/CU-S3631N/2012|H1N2|12/06/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
AB434288|Influenza A Virus|A/swine/Ratchaburi/NIAH1481/2000|H1N1|2000|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KC610049|Influenza A Virus|A/swine/Thailand/CU-SPL4/2010|H1N1|08/10/2010|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2KJ162044|Influenza A Virus|A/swine/Thailand/CU-S3340N/2012|H1N1|01/24/2012|Swine|Asia|Thailand|-N/A-|-N/A-|alpha|1A.1.2
GQ229261|Influenza A Virus|A/swine/Hong Kong/NS837/2001(H1N1)|H1N1|04/09/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1CY027155|Influenza A Virus|A/swine/Iowa/24297/1991|H1N1|1991|Swine|North America|USA|Iowa|-N/A-|alpha|1A.1CY028780|Influenza A Virus|A/swine/California/T9001707/1991|H1N1|1991|Swine|North America|USA|California|-N/A-|alpha|1A.1KF057118|Influenza A Virus|A/swine/Beijing/216/1992(H1N1)|H1N1|1992|Swine|Asia|China|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085073|Influenza A Virus|A/swine/Hong Kong/1286/1993|H1N1|11/29/1993|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3
CY085350|Influenza A Virus|A/swine/Hong Kong/NS143/2000|H1N1|09/15/2000|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1.3CY085478|Influenza A Virus|A/swine/Hong Kong/NS1680/2001|H1N1|12/28/2001|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha|1A.1.3
JN375115|Influenza A Virus|A/swine/Guangdong/603/2010(H1N2)|H1N2|02/27/2010|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3KM029815|Influenza A Virus|A/swine/Guangdong/NS3155/2012|H1N2|09/13/2012|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1.3
CY087088|Influenza A Virus|A/swine/Hong Kong/2503/1994|H1N1|04/25/1994|Swine|Asia|Hong Kong|-N/A-|-N/A-|alpha-beta-gamma2-like|1A.1GU086033|Influenza A Virus|A/swine/Guangdong/446/2006(H1N1)|H1N1|2006|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1FJ536842|Influenza A Virus|A/swine/Guangdong/1/2005|H1N1|2005|Swine|Asia|China|-N/A-|-N/A-|alpha|1A.1
KU976666|Influenza A Virus|A/swine/Mexico/AVX3/2011|H1N1|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976612|Influenza A Virus|A/swine/Mexico/AVX42/2012|H1N1|11/26/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1KU976570|Influenza A Virus|A/swine/Mexico/AVX11/2012|H1N1|03/13/2012|Swine|North America|Mexico|-N/A-|-N/A-|gamma2-beta-like|1A.3.1
CY159249|Influenza A Virus|A/swine/Minnesota/SG1470/2004|H1N1|08/13/2004|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2KU752363|Influenza A Virus|A/swine/Oklahoma/A01730424/2016|H1N1|01/22/2016|Swine|North America|USA|Oklahoma|15-16|beta|1A.2KF712462|Influenza A Virus|A/swine/Nebraska/A01399492/2013|H1N1|09/05/2013|Swine|North America|USA|Nebraska|-N/A-|beta|1A.2KC445220|Influenza A Virus|A/swine/Nebraska/A01277829/2012|H1N1|11/27/2012|Swine|North America|USA|Nebraska|12-13|beta|1A.2
AF455679|Influenza A Virus|A/Swine/Iowa/930/01|H1N2|2001|Swine|North America|USA|Iowa|-N/A-|beta|1A.2AF455678|Influenza A Virus|A/Swine/Minnesota/55551/00|H1N2|2000|Swine|North America|USA|Minnesota|-N/A-|beta|1A.2CY098476|Influenza A Virus|A/swine/North Carolina/47834/2000|H1N1|2000|Swine|North America|USA|North Carolina|-N/A-|beta|1A.2CY040545|Influenza A Virus|A/swine/North Carolina/7571/2003|H1N1|2003|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3CY157935|Influenza A Virus|A/swine/North Carolina/01169/2006|H1N2|06/22/2006|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3
CY157743|Influenza A Virus|A/swine/Tennessee/00264/2004|H1N1|03/11/2004|Swine|North America|USA|Tennessee|03-04|gamma2|1A.3JQ906888|Influenza A Virus|A/swine/Minnesota/A01201429/2011|H1N2|01/27/2011|Swine|North America|USA|Minnesota|10-11|gamma2|1A.3.2
CY159613|Influenza A Virus|A/swine/Texas/SG1187/2004|H1N1|02/25/2004|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY159761|Influenza A Virus|A/swine/Texas/00525/2005|H1N1|03/08/2005|Swine|North America|USA|Texas|04-05|gamma2|1A.3.2
KC134375|Influenza A Virus|A/swine/Illinois/A01203922/2012|H1N1|10/2012|Swine|North America|USA|Illinois|12-13|gamma2|1A.3.2JQ922326|Influenza A Virus|A/swine/Oklahoma/A01134908/2011|H1N1|03/24/2011|Swine|North America|USA|Oklahoma|10-11|gamma2|1A.3.2
CY157631|Influenza A Virus|A/swine/Texas/00195/2003|H1N1|10/15/2003|Swine|North America|USA|Texas|03-04|gamma2|1A.3.2CY098516|Influenza A Virus|A/swine/North Carolina/18161/2002|H1N1|2002|Swine|North America|USA|North Carolina|-N/A-|gamma2|1A.3.3CY157647|Influenza A Virus|A/swine/Kentucky/SG1167/2003|H1N1|01/22/2003|Swine|North America|USA|Kentucky|02-03|gamma-npdm-like|1A.3.3
AF250124|Influenza A Virus|A/Swine/Indiana/9K035/99|H1N2|1999|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3AF455681|Influenza A Virus|A/Swine/Illinois/100085A/01|H1N2|2001|Swine|North America|USA|Illinois|-N/A-|gamma|1A.3.3.3
KJ640283|Influenza A Virus|A/swine/Indiana/13TOSU1052/2013|H1N2|07/01/2013|Swine|North America|USA|Indiana|-N/A-|gamma|1A.3.3.3KX036706|Influenza A Virus|A/swine/Illinois/A01733206/2016|H1N1|03/10/2016|Swine|North America|USA|Illinois|15-16|gamma|1A.3.3.3KT767634|Influenza A Virus|A/swine/Iowa/A02025552/2015|H1N1|08/13/2015|Swine|North America|USA|Iowa|-N/A-|gamma|1A.3.3.3
CY107827|Influenza A Virus|A/swine/Korea/1130/2009|H1N2|01/2009|Swine|Asia|South Korea|-N/A-|08-09|gamma|1A.3.3.3AF455675|Influenza A Virus|A/Swine/Ohio/891/01|H1N2|2001|Swine|North America|USA|Ohio|-N/A-|gamma|1A.3.3.3AF455680|Influenza A Virus|A/Swine/Indiana/P12439/00|H1N2|2000|Swine|North America|USA|Indiana|-N/A-|npdm|1A.3.3
KU976628|Influenza A Virus|A/swine/Mexico/AVX27/2012|H1N1|08/02/2012|Swine|North America|Mexico|-N/A-|-N/A-|npdm|1A.3.3.2HQ424885|Influenza A Virus|A/swine/Iowa/44837-1/2009(H1N1)|H1N1|11/08/2009|Swine|North America|USA|Iowa|09-10|npdm|1A.3.3.2
JF279888|Influenza A Virus|A/swine/Costa Rica/000125-14/2010|H1N1|11/01/2010|Swine|North America|Costa Rica|-N/A-|-N/A-|npdm|1A.3.3.2KC222556|Influenza A Virus|A/swine/Freren/IDT13837-1/2011|H1N2|08/31/2011|Swine|Europe|Germany|-N/A-|-N/A-|npdm|1A.3.3.2CY114996|Influenza A Virus|A/swine/Pennsylvania/A01134526/2011|H1N1|02/14/2011|Swine|North America|USA|Pennsylvania|10-11|npdm|1A.3.3.2HQ291549|Influenza A Virus|A/swine/IL/27486-2/2010(H1N1)|H1N1|06/02/2010|Swine|North America|USA|Illinois|-N/A-|npdm|1A.3.3.2KU666855|Influenza A Virus|A/swine/Nebraska/A01729687/2016|H1N1|01/15/2016|Swine|North America|USA|Nebraska|15-16|npdm|1A.3.3.2
CY057462|Influenza A Virus|A/Wisconsin/629-D00839/2009(H1N1)|H1N1|09/22/2009|Human|North America|USA|Wisconsin|08-09|npdm|NAJF714082|Influenza A Virus|A/swine/MB/36/2009|H1N1|10/06/2009|Swine|North America|Canada|-N/A-|09-10|npdm|1A.3.3.2KM027967|Influenza A Virus|A/swine/Guangxi/NS2777/2010|H1N2|11/07/2010|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3KM028087|Influenza A Virus|A/swine/Guangxi/2891/2011|H1N2|10/09/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3
GQ229333|Influenza A Virus|A/swine/Hong Kong/1562/2005(H1N2)|H1N2|11/11/2005|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085998|Influenza A Virus|A/swine/Hong Kong/NS252/2009|H1N2|03/19/2009|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1KM027639|Influenza A Virus|A/swine/Guangdong/3583/2011|H1N2|10/27/2011|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
GQ229365|Influenza A Virus|A/swine/Hong Kong/NS623/2002(H1N2)|H1N2|07/09/2002|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1CY085622|Influenza A Virus|A/swine/Hong Kong/NS30/2004|H1N2|01/06/2004|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1EF556199|Influenza A Virus|A/swine/Guangxi/13/2006|H1N2|2006|Swine|Asia|China|-N/A-|-N/A-|npdm|1A.3.3.1
KM028935|Influenza A Virus|A/swine/Hong Kong/4083/2011|H1N2|10/20/2011|Swine|Asia|Hong Kong|-N/A-|-N/A-|npdm|1A.3.3.1GQ229309|Influenza A Virus|A/swine/Hong Kong/78/2003(H1N2)|H1N2|01/23/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|gamma-npdm-like|1A.3.3
AF116575|Influenza A Virus|A/Brevig Mission/1/1918|H1N1|1918|Human|North America|USA|Alaska|-N/A-|Other|Other-HumanD00837|Influenza A Virus|A/swine/Cambridge/1939|H1N1|1939|Swine|Europe|United Kingdom|-N/A-|-N/A-|ND|Other-Human
CY019755|Influenza A Virus|A/Memphis/49/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY021029|Influenza A Virus|A/Baylor/4052/1981|H1N1|1981|Human|North America|USA|Texas|-N/A-|Other|Other-HumanCY017235|Influenza A Virus|A/Memphis/29/1983|H1N1|1983|Human|North America|USA|Tennessee|-N/A-|Other|Other-HumanCY020189|Influenza A Virus|A/New Zealand/7/1983|H1N1|1983|Human|Oceania|New Zealand|-N/A-|-N/A-|Other|Other-HumanCY020565|Influenza A Virus|A/Texas/2922-3/1986|H1N1|1986|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2DQ508873|Influenza A Virus|A/Taiwan/01/1986|H1N1|1986|Human|Asia|Taiwan|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY045852|Influenza A Virus|A/Siena/4/1987(H1N1)|H1N1|1987|Human|Europe|Italy|-N/A-|-N/A-|delta-like|Other-Human-1B.2JX477159|Influenza A Virus|A/Florida/2/1993(H1N1)|H1N1|1993|Human|North America|USA|Florida|-N/A-|delta-like|Other-Human-1B.2JX477164|Influenza A Virus|A/Wellington/47/1992|H1N1|1992|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125084|Influenza A Virus|A/Moscow/13/1998|H1N1|1998|Human|Europe|Russia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY117691|Influenza A Virus|A/Malaysia/06768/1995|H1N1|05/16/1995|Human|Asia|Malaysia|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY016963|Influenza A Virus|A/New York/633/1995|H1N1|12/15/1995|Human|North America|USA|New York|95-96|delta-like|Other-Human-1B.2
CY009316|Influenza A Virus|A/Texas/36/91|H1N1|1991|Human|North America|USA|Texas|-N/A-|delta-like|Other-Human-1B.2CY033614|Influenza A Virus|A/Beijing/262/1995|H1N1|1995|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY125076|Influenza A Virus|A/Shanghai/2/1997|H1N1|1997|Human|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2GU646016|Influenza A Virus|A/swine/Fujian/0325/2008|H1N1|03/25/2008|Swine|Asia|China|-N/A-|-N/A-|delta-like|Other-Human-1B.2EU097934|Influenza A Virus|A/Denmark/3/2001|H1N1|2001|Human|Europe|Denmark|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KU976716|Influenza A Virus|A/swine/Mexico/AVX7/2011|H1N2|03/18/2011|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2KU976748|Influenza A Virus|A/swine/Mexico/AVX49/2013|H1N2|03/25/2013|Swine|North America|Mexico|-N/A-|-N/A-|delta-like|Other-Human-1B.2
KP456570|Influenza A Virus|A/Canterbury/23/2000|H1N1|08/03/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2CY022149|Influenza A Virus|A/Auckland/579/2000|H1N1|08/30/2000|Human|Oceania|New Zealand|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY086839|Influenza A Virus|A/swine/Hong Kong/1435/2006|H1N1|10/12/2006|Swine|Asia|Hong Kong|-N/A-|-N/A-|delta-like|Other-Human-1B.2AB628080|Influenza A Virus|A/swine/Binh Doung/02_16/2010|H1N2|2010|Swine|Asia|Viet Nam|-N/A-|-N/A-|delta-like|Other-Human-1B.2
CY104020|Influenza A Virus|A/HaNoi/BM898/2003|H1N1|10/14/2003|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2-delta-like|Other-Human-1B.2CY002984|Influenza A Virus|A/New York/221/2003|H1N1|03/21/2003|Human|North America|USA|New York|02-03|delta2|Other-Human-1B.2CY104822|Influenza A Virus|A/Hanoi/ISBM31/2005|H1N1|04/08/2005|Human|Asia|Viet Nam|-N/A-|-N/A-|delta2|Other-Human-1B.2CY075856|Influenza A Virus|A/swine/Argentina/CIP051-BsAs76/2009|H1N1|10/2009|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2KR863479|Influenza A Virus|A/swine/Argentina/CIP051-C05-M1-1/2012|H1N2|12/05/2012|Swine|South America|Argentina|-N/A-|-N/A-|delta2|Other-Human-1B.2
HQ896649|Influenza A Virus|A/swine/Minnesota/6004-1/2009|H1N1|11/19/2009|Swine|North America|USA|Minnesota|09-10|delta2|Other-Human-1B.2KP457752|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|NAEU100706|Influenza A Virus|A/Iowa/02/2006|H1N1|12/29/2006|Human|North America|USA|Iowa|06-07|delta2|Other-Human-1B.2CY159409|Influenza A Virus|A/swine/North Carolina/01550/2007|H1N1|04/04/2007|Swine|North America|USA|North Carolina|06-07|delta2|1B.2.1
KU598293|Influenza A Virus|A/swine/Indiana/A01729197/2016|H1N2|01/07/2016|Swine|North America|USA|Indiana|15-16|delta2|1B.2.1KU752378|Influenza A Virus|A/swine/North Carolina/A01730690/2016|H1N2|01/28/2016|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1KT000052|Influenza A Virus|A/swine/North Carolina/A02077509/2015|H1N2|05/06/2015|Swine|North America|USA|North Carolina|14-15|delta2|1B.2.1KU160750|Influenza A Virus|A/swine/North Carolina/A01945825/2015|H1N2|10/22/2015|Swine|North America|USA|North Carolina|15-16|delta2|1B.2.1
FJ638298|Influenza A Virus|A/swine/IL/00685/2005(H1N1)|H1N1|2005|Swine|North America|USA|Illinois|-N/A-|delta2|1B.2.1CY099151|Influenza A Virus|A/swine/North Carolina/00839/2005(H1N1)|H1N1|10/27/2005|Swine|North America|USA|North Carolina|05-06|delta2|1B.2.1HQ896632|Influenza A Virus|A/swine/Indiana/0582-3/2009|H1N2|08/04/2009|Swine|North America|USA|Indiana|08-09|delta2|1B.2.1
CY098509|Influenza A Virus|A/swine/North Carolina/38448-1/2005|H1N1|2005|Swine|North America|USA|North Carolina|-N/A-|delta2|1B.2.1KP027593|Influenza A Virus|A/swine/Brazil/G2P2/2013(H1N2)|H1N2|06/05/2013|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KM507519|Influenza A Virus|A/swine/Brazil/185-11-7/2011|H1N2|07/06/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2KF680296|Influenza A Virus|A/swine/Brazil/31_11_1/2011|H1N2|02/25/2011|Swine|South America|Brazil|-N/A-|-N/A-|delta-like|1B.2.2CY075864|Influenza A Virus|A/swine/Argentina/CIP051-StaFeN2/2010|H1N2|05/2010|Swine|South America|Argentina|-N/A-|-N/A-|delta-like|1B.2.2
DQ280236|Influenza A Virus|A/swine/Ontario/48235/04|H1N2|2004|Swine|North America|Canada|-N/A-|-N/A-|delta-like|1B.2.2JN652497|Influenza A Virus|A/swine/Iowa/A01049766/2011|H1N2|03/29/2011|Swine|North America|USA|Iowa|10-11|delta-like|1B.2.2JX975013|Influenza A Virus|A/swine/Oklahoma/A01203865/2012|H1N2|09/2012|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2JQ023762|Influenza A Virus|A/swine/Minnesota/0745/2010|H1N2|03/03/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2KC333087|Influenza A Virus|A/swine/Illinois/A01271513/2012|H1N2|10/26/2012|Swine|North America|USA|Illinois|12-13|delta1|1B.2.2.2KT924274|Influenza A Virus|A/swine/Iowa/A01795227/2015|H1N2|09/23/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2
KF922774|Influenza A Virus|A/swine/North Carolina/A01290725/2013|H1N2|11/2013|Swine|North America|USA|North Carolina|13-14|delta1|1B.2.2.2KF922759|Influenza A Virus|A/swine/Kansas/A01290646/2013|H1N2|10/14/2013|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.2KT867232|Influenza A Virus|A/swine/Iowa/A02076974/2015|H1N2|09/09/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.2KF697082|Influenza A Virus|A/swine/Nebraska/A01399636/2013|H1N2|09/09/2013|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.2
JN652509|Influenza A Virus|A/swine/Arkansas/A01049917/2011|H1N2|05/03/2011|Swine|North America|USA|Arkansas|10-11|delta1|1B.2.2.2HQ896639|Influenza A Virus|A/swine/Minnesota/0913-1/2009|H1N2|09/16/2009|Swine|North America|USA|Minnesota|08-09|delta1|1B.2.2.2CY045599|Influenza A Virus|A/swine/Oklahoma/010226-17/2008(H1N2)|H1N2|2008|Swine|North America|USA|Oklahoma|-N/A-|delta1|1B.2.2.2HM570049|Influenza A Virus|A/swine/Minnesota/03023/2010(H1N2)|H1N2|04/26/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.2JN652405|Influenza A Virus|A/swine/Oklahoma/A01049500/2011|H1N2|02/03/2011|Swine|North America|USA|Oklahoma|10-11|delta1|1B.2.2.2JX657805|Influenza A Virus|A/swine/Minnesota/A01076183/2009|H1N2|12/28/2009|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1HQ896666|Influenza A Virus|A/swine/Minnesota/8721-1/2010|H1N2|04/14/2010|Swine|North America|USA|Minnesota|09-10|delta1|1B.2.2.1KF704120|Influenza A Virus|A/swine/Iowa/13C094/2013|H1N2|03/26/2013|Swine|North America|USA|Iowa|12-13|delta1|1B.2.2.1KT825123|Influenza A Virus|A/swine/Iowa/A01770929/2015|H1N2|09/01/2015|Swine|North America|USA|Iowa|-N/A-|delta1|1B.2.2.1KU198904|Influenza A Virus|A/swine/Nebraska/A01940285/2015|H1N2|09/02/2015|Swine|North America|USA|Nebraska|-N/A-|delta1|1B.2.2.1KX036670|Influenza A Virus|A/swine/Illinois/A01733533/2016|H1N2|03/15/2016|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1KU695705|Influenza A Virus|A/swine/Oklahoma/A01730089/2016|H1N2|01/22/2016|Swine|North America|USA|Oklahoma|15-16|delta1|1B.2.2.1
KJ777467|Influenza A Virus|A/swine/Kansas/A01377287/2014|H1N2|04/01/2014|Swine|North America|USA|Kansas|13-14|delta1|1B.2.2.1KU379643|Influenza A Virus|A/swine/Illinois/A01896080/2015|H1N2|11/30/2015|Swine|North America|USA|Illinois|15-16|delta1|1B.2.2.1
CY099207|Influenza A Virus|A/swine/Minnesota/02324/2008|H1N2|09/10/2008|Swine|North America|USA|Minnesota|-N/A-|delta1|1B.2.2.1CY115896|Influenza A Virus|A/swine/England/00003/2009|H1N2|01/12/2009|Swine|Europe|United Kingdom|-N/A-|08-09|delta-like|1B.2.2
AF085413|Influenza A Virus|A/swine/Scotland/410440/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1AF085414|Influenza A Virus|A/swine/England/438207/94|H1N2|1994|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1CY116159|Influenza A Virus|A/swine/England/40280/1996|H1N2|07/09/1996|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116198|Influenza A Virus|A/swine/England/448813/1994|H1N2|04/24/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.1
KR700342|Influenza A Virus|A/swine/Scotland/51190/1999|H1N2|09/30/1999|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.1CY116323|Influenza A Virus|A/swine/England/88761/1997|H1N2|02/03/1997|Swine|Europe|United Kingdom|-N/A-|96-97|Other|1B.1.1
KR700493|Influenza A Virus|A/swine/England/038712/2012|H1N2|12/05/2012|Swine|Europe|United Kingdom|-N/A-|12-13|Other|1B.1.1JF297998|Influenza A Virus|A/swine/England/1428/2009|H1N2|12/08/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1JF297997|Influenza A Virus|A/swine/England/1157/2009|H1N2|10/05/2009|Swine|Europe|United Kingdom|-N/A-|09-10|Other|1B.1.1KR699860|Influenza A Virus|A/swine/England/058879/2011|H1N2|05/16/2011|Swine|Europe|United Kingdom|-N/A-|10-11|Other|1B.1.1
CY115912|Influenza A Virus|A/swine/England/002295/2002|H1N2|12/04/2002|Swine|Europe|United Kingdom|-N/A-|02-03|Other|1B.1.1KR700601|Influenza A Virus|A/swine/England/463180/1994|H1N2|05/12/1994|Swine|Europe|United Kingdom|-N/A-|93-94|Other|1B.1.2HQ660233|Influenza A Virus|A/swine/Italy/3592/1999|H1N2|1999|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2CY116487|Influenza A Virus|A/swine/Italy/172336/2001|H1N1|2001|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2
HQ660238|Influenza A Virus|A/swine/Italy/70757/2009|H1N2|2009|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KF305978|Influenza A Virus|A/swine/Italy/20333/2006|H1N2|2006|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.2KR700193|Influenza A Virus|A/swine/France/CotesdArmor-0198/2011|H1N2|04/11/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3KC295233|Influenza A Virus|A/swine/France/22-120255/2012|H1N2|2012|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3KJ128311|Influenza A Virus|A/swine/France/22-120390/2012|H1N2|11/16/2012|Swine|Europe|France|-N/A-|12-13|Other|1B.1.2.3KC345629|Influenza A Virus|A/swine/France/22-110153/2011|H1N2|03/07/2011|Swine|Europe|France|-N/A-|10-11|Other|1B.1.2.3
CY116367|Influenza A Virus|A/swine/Cotes d'Armor/1174/2009|H1N2|2009|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3CY116410|Influenza A Virus|A/swine/Cotes d'Armor/790/1997|H1N2|1997|Swine|Europe|France|-N/A-|-N/A-|Other|1B.1.2.3EU053148|Influenza A Virus|A/swine/Bakum/1832/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1B.1.2.1AJ344010|Influenza A Virus|A/swine/Italy/1081/00|H1N2|2000|Swine|Europe|Italy|-N/A-|-N/A-|Other|1B.1.2.1
KR700883|Influenza A Virus|A/swine/Netherlands/De-Lutte-167A/2012|H1N2|04/25/2012|Swine|Europe|Netherlands|-N/A-|11-12|Other|1B.1.2.1CY116550|Influenza A Virus|A/swine/Spain/40564/2002(H1N2)|H1N2|2002|Swine|Europe|Spain|-N/A-|-N/A-|Other|1B.1.2.1CY116442|Influenza A Virus|A/swine/Gent/177/2002|H1N2|2002|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1B.1.2.1
KR699932|Influenza A Virus|A/swine/Belgium/Oostkamp-26/2012|H1N2|01/12/2012|Swine|Europe|Belgium|-N/A-|11-12|Other|1B.1.2.1KR700177|Influenza A Virus|A/swine/Spain/29257/2012|H1N2|01/30/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2KR700592|Influenza A Virus|A/swine/Spain/29262/2012|H1N2|01/31/2012|Swine|Europe|Spain|-N/A-|11-12|Other|1B.1.2
AF085415|Influenza A Virus|A/swine/England/690421/95|H1N2|1995|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1B.1.2KR700057|Influenza A Virus|A/swine/Denmark/10-1958-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KR700049|Influenza A Virus|A/swine/Denmark/10-1725-1/2011|H1N2|2011|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
CY116531|Influenza A Virus|A/swine/Lutol/3/2000(H1N1)|H1N1|2000|Swine|Europe|Poland|-N/A-|-N/A-|Other|1C.2.3CY116356|Influenza A Virus|A/swine/Finnistere/800/2004|H1N1|2004|Swine|Europe|France|-N/A-|-N/A-|Other|1C.2.3CY085550|Influenza A Virus|A/swine/Hong Kong/NS129/2003|H1N1|02/06/2003|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
KM028327|Influenza A Virus|A/swine/Guangxi/3612/2011|H1N1|12/11/2011|Swine|Asia|China|-N/A-|-N/A-|Other|1C.2.3KM029167|Influenza A Virus|A/swine/Hong Kong/126/2012|H1N1|01/05/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3KM029311|Influenza A Virus|A/swine/Hong Kong/NS967/2012|H1N1|03/15/2012|Swine|Asia|Hong Kong|-N/A-|-N/A-|Other|1C.2.3
AM920737|Influenza A Virus|A/swine/Germany/SEk1178/2000|H1N2|2000|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.2.2GQ161124|Influenza A Virus|A/swine/Haseluenne/IDT2617/2003|H1N1|10/09/2003|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.2JQ301929|Influenza A Virus|A/swine/Spain/16/2009|H1N1|07/2009|Swine|Europe|Spain|-N/A-|08-09|Other|1C.2.2KU517792|Influenza A Virus|A/Poland/wild boar/1951718/2013|H1N1|12/12/2013|Swine|Europe|Poland|-N/A-|13-14|Other|1C.2.2KR700366|Influenza A Virus|A/swine/Germany/Reinberg-IDT14457-1/2012|H1N1|01/02/2012|Swine|Europe|Germany|-N/A-|11-12|Other|1C.2.2
CY009892|Influenza A Virus|A/swine/Spain/50047/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.2GQ161156|Influenza A Virus|A/swine/Greven/IDT2889/2004|H1N1|01/07/2004|Swine|Europe|Germany|-N/A-|03-04|Other|1C.2.1
KJ847576|Influenza A Virus|A/swine/Italy/50814/2012|H1N1|01/2012|Swine|Europe|Italy|-N/A-|11-12|Other|1C.2.1KR700891|Influenza A Virus|A/swine/Belgium/Lichtervelde-57/2013|H1N1|03/01/2013|Swine|Europe|Belgium|-N/A-|12-13|Other|1C.2.1
CY116466|Influenza A Virus|A/swine/Italy/151672-3/2003|H1N1|2003|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.2.1CY010572|Influenza A Virus|A/swine/Spain/51915/2003|H1N1|2003|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1
KR700869|Influenza A Virus|A/swine/Netherlands/Wijhe-371/2012|H1N1|10/24/2012|Swine|Europe|Netherlands|-N/A-|12-13|Other|1C.2.1JX908073|Influenza A Virus|A/swine/Spain/03/2008|H1N1|06/01/2008|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.2.1KR066556|Influenza A Virus|A/swine/Denmark/101081-2/2010|H1N2|05/28/2010|Swine|Europe|Denmark|-N/A-|09-10|Other|1C.2KC900284|Influenza A Virus|A/swine/Denmark/13160-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2KC900282|Influenza A Virus|A/swine/Denmark/13772-1/2003|H1N1|2003|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR066560|Influenza A Virus|A/swine/Denmark/10913-1/2009|H1N1|04/2009|Swine|Europe|Denmark|-N/A-|08-09|Other|1C.2KC900270|Influenza A Virus|A/swine/Denmark/13184-1/2004|H1N1|2004|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
FJ805962|Influenza A Virus|A/swine/Belgium/1/1998|H1N1|1998|Swine|Europe|Belgium|-N/A-|-N/A-|Other|1C.2CY038023|Influenza A Virus|A/swine/Denmark/WVL9/1993|H1N1|1993|Swine|Europe|Denmark|-N/A-|-N/A-|Other|1C.2
KR700640|Influenza A Virus|A/swine/England/267/2007|H1N1|02/22/2007|Swine|Europe|United Kingdom|-N/A-|06-07|Other|1C.1CY116206|Influenza A Virus|A/swine/England/453/2006|H1N1|05/05/2006|Swine|Europe|United Kingdom|-N/A-|05-06|Other|1C.1
KR701057|Influenza A Virus|A/swine/England/024079/2013|H1N1|08/21/2013|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1CY116074|Influenza A Virus|A/swine/England/26029/1998|H1N1|06/17/1998|Swine|Europe|United Kingdom|-N/A-|-N/A-|Other|1C.1
CY037999|Influenza A Virus|A/swine/Spain/WVL6/1991|H1N1|1991|Swine|Europe|Spain|-N/A-|-N/A-|Other|1C.1AJ344019|Influenza A Virus|A/swine/Italy/1498-2/97|H1N1|1997|Swine|Europe|Italy|-N/A-|-N/A-|Other|1C.1AM920728|Influenza A Virus|A/swine/Germany/Vi5698/1995|H1N1|1995|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1
KJ889364|Influenza A Virus|A/swine/Germany/S27/1981|H1N1|1981|Swine|Europe|Germany|-N/A-|-N/A-|Other|1C.1AF091314|Influenza A Virus|A/swine/Netherlands/3/80|H1N1|1980|Swine|Europe|Netherlands|-N/A-|-N/A-|Other|1C.1KJ889300|Influenza A Virus|A/swine/Arnsberg/1/1979|H1N1|12/07/1979|Swine|Europe|Germany|-N/A-|79-80|Other|1C.1KT715450|Influenza A Virus|A/duck/Schleswig/21/1979|H1N1|1979|Duck/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianKT715445|Influenza A Virus|A/coot/Schleswig/2/1980|H1N1|1980|Common Coot/Avian|Europe|Germany|-N/A-|-N/A-|Other|Other-AvianD00839|Influenza A Virus|A/duck/HK/196/1977|H1|1977|Duck/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-Avian
GU066779|Influenza A Virus|A/mallard/Marquenterre/Z237/1983(H1N1)|H1N1|1983|Mallard/Avian|Europe|France|-N/A-|-N/A-|Other|Other-AvianAB271113|Influenza A Virus|A/duck/Miyagi/66/1977|H1N1|1977|Duck/Avian|Asia|Japan|-N/A-|-N/A-|Other|Other-Avian
KP658029|Influenza A Virus|A/duck/Hainan/Q221/2012|H1N2|2012|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-AvianKP658037|Influenza A Virus|A/duck/Fujian/89/2013|H1N8|2013|Duck/Avian|Asia|China|-N/A-|-N/A-|Other|Other-Avian
EF679200|Influenza A Virus|A/chicken/Hong Kong/14/1976|H1N1|1976|Chicken/Avian|Asia|Hong Kong|-N/A-|-N/A-|Other|Other-AvianCY094927|Influenza A Virus|A/duck/Victoria/2b/1980|H1N1|1980|Duck/Avian|Oceania|Australia|-N/A-|-N/A-|Other|Other-AvianCY179139|Influenza A Virus|A/thick-billed murre/Alaska/335/1976|H1N6|1976|Murre/Avian|North America|USA|Alaska|-N/A-|Other|Other-Avian
CY178994|Influenza A Virus|A/blue-winged teal/Wisconsin/336/1976|H1N1|1976|Blue-Winged Teal/Avian|North America|USA|Wisconsin|-N/A-|Other|Other-AvianCY004507|Influenza A Virus|A/mallard/ALB/201/1998|H1N1|08/11/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
AF091310|Influenza A Virus|A/turkey/Minnesota/1661/81|H1N1|1981|Turkey/Avian|North America|USA|Minnesota|-N/A-|Other|Other-AvianCY136973|Influenza A Virus|A/mallard/Alberta/119/1998|H1N1|08/06/1998|Mallard/Avian|North America|Canada|-N/A-|-N/A-|Other|Other-Avian
CY146085|Influenza A Virus|A/ruddy turnstone/New Jersey/AI09-618/2009|H1N9|05/26/2009|Ruddy Turnstone/Avian|North America|USA|New Jersey|08-09|Other|Other-AvianCY186648|Influenza A Virus|A/blue-winged teal/Illinois/12OS4788/2012|H1N1|10/20/2012|Blue-Winged Teal/Avian|North America|USA|Illinois|12-13|Other|Other-Avian
0.1
LEGENDUS Clade
LEGENDGlobal Clade
1B
1C
1A
H1 reference tree
Global Swine H1 Classification & IRD
www.fludb.orgPublic influenza virus database and analysis resource
Tight integration of a wide variety of different data types
Novel derived data only available in IRD
A broad array of analysis and visualization tools
Individual personal online workbenches
Large user community• 1534 sessions/week (2017 average)
• 41% from U.S.• 59% international (UK, China, Japan, India, Germany, South Korea, Canada, etc.)
• 529 citations in scientific publications (20JUN2017)
6/20/2017 Influenza Research Database - Influenza genome database with visualization and analysis tools
https://www.fludb.org/brc/home.spg?decorator=influenza 1/2
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What's New with FluGlobal Swine H1 Classification In collaboration with Tavis Anderson and AmyVincent at USDA, the newly proposed GlobalSwine H1 Classification scheme has beenimplemented in IRD. Major functions include:
Clade classification of all H1 sequences inIRD regardless of host.
Sequence search based on H1 cladeannotations.
Clade assignment tool for userprovided H1sequences.
Phylogenetic tree decoration based on H1clade annotations.
Comparison of H1 sequences by MetaCATSusing H1 clade metadata.
Previous Scientific Reports
IRD will search in data fields associated withgenomic sequence, protein, strain andsurveillance data. (Details including wildcardusage)
Ex: CY042246, China, H3N2...
GenBank data downloaded daily.Data Aggregated by IRD (Source)Strains (GenBank) 120,903
Sequences (GenBank) 539,753
Proteins (GenBank and UniProt) 869,351
3D Protein Structures (PDB) 667
Sequences & Strains
Animal Surveillance
Sequence Feature Variant Types
Immune epitope data
3D protein structures
Host Factor Data
Antiviral Drugs
Sequence Alignment
Phylogenetic Tree
Sequence Variation (SNP)
Metadatadriven Comparative Analysis
HPAI H5N1 Clade Classification
Swine H1 Clade Classification
BLAST
Store and share data
Combine working sets
Integrate your data with IRD data
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IRD Workshop Dates: February 25, 2017 Location: 2017 American Association of SwineVeterinarians Annual Meeting, Denver, Colorado
Influenza Vaccines for the World – IVW 2017 Dates: April 1921, 2017 Location: Lausanne, Switzerland
IRD/VPR Handson Workshop Dates: May 29, 2017 Location: Erasmus University Medical Center,Netherlands
4th Annual Short Course for Emerging Leaders in
Medical Virology of the Global Virus Network Dates: August 1319, 2017 Location: University of Maryland School of Medicine,Baltimore, Maryland Application deadline: June 1, 2017
Matrix Protein 2 extracellular domain (M2e) is a
candidate for developing a universal Influenza A
vaccine. However poor immunogenicity presents a
roadblock. Two recently published platforms for
delivering M2e epitopes show promise. Recombinant adenoviruses displaying matrix 2
ectodomain epitopes (M2e) on their fiber proteins
as universal influenza vaccines.Tang et al.introduced conserved M2e epitopes into the HI loop ofchimpanzee adenovirus fiber protein. The insertion waswell tolerated and M2e epitopes were expressed on thevirion surface. One recombinant adenovirus, AdC68F3M2e(H1H5H7), induced robust M2especificantibody responses in BALB/c mice and conferredefficient protection against homologous andheterologous virus challenges. Consensus M2e peptide conjugated to gold
nanoparticles confers protection against H1N1,
H3N2 and H5N1 influenza A viruses. Tao, et al.
Highlights
The IRD Workbench allows users to save 'working sets' of
sessions in their own private workspace. Users can share
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Phylogenetic TreesIRD uses PhyML (Guindon and Gascuel, 2003) and offersmultiple evolutionary models to infer phylogenies.Decoration options let you color tree leaves by metadata.Export image and legend, or download trees as Newick orPhyloXml files for other viewing software.
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Quick Tree produces an accurate topology for >1,000 sequences. Custom Tree lets you choose anevolutionary model and parameter values.ModelCompare (Custom Tree) suggests anevolutionary model to best fit the data.Specify metadata for the leaves (strain name, etc.)
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Data Summary Updated June 18, 2017
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H1 Clade Classification Tool4/18/2017 Influenza Research Database - Swine H1 Clade Classification
https://www.fludb.org/brc/h1CladeClassifier.spg?method=ShowCleanInputPage&decorator=influenza 1/1
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Release Date: Mar 16, 2017
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to law
enforcement officials.
This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between Northrop
Grumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
ANALYSIS NAME
Analyze my custom sequences only. Upload a file containing my sequences in FASTA format.
Paste sequences in FASTA format.
Analyze my custom sequences and associated metadata with IRDsequences.
INPUT SEQUENCES
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Swine H1 Clade Classification Tool
The swine H1 clade classification tool classifies the clade of the HA/H1 viruses from any host and for any NA subtype, with reference to the global swine H1 clade scheme(Anderson et al., 2016 ) the US swine H1 classification scheme. This tool infers the clade for a query sequence from its position within the reference tree. It is a collaborationbetween Catherine Macken at IRD and Tavis Anderson and others at the USDA.
SOP for global swine H1 clade classification
Global Swine H1 Clade Classification Reference Tree
Global Swine H1 Clade Classification Reference Sequences
SOP for US swine H1 clade classification
US Swine H1 Clade Classification Reference Tree
Description of US clades with name that include "like"
Sequences from other serotypes of HA, or other segments will yield unpredictable and likely incorrect results. If unsure of your sequence's segment or serotype, we suggest youuse the IRD Sequence Annotation Tool (Analyze & Visualize > Annotate Nucleotide Sequences).
Home Swine H1 Clade Classification
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6/21/2017 Influenza Research Database - Swine H1 Clade Classification
https://www.fludb.org/brc/h1CladeClassifier.spg?decorator=influenza&method=RetrieveResults&ticketNumber=HC_813246458358# 1/1
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Release Date: May 23, 2017
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials. This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
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Swine H1 Clade Classification Report
Sequence Identifier Global Swine H1 Clade Classification (SOP) US Swine H1 Clade Classification (SOP)
Clade Assignment Unified Tree Tree Viewer Clade Assignment Unified Tree Tree Viewer
KP461621 1B.2.1 Download View Tree delta2 Download View Tree
KX151021 1B.2.1 Download View Tree delta2 Download View Tree
Home Swine H1 Clade Classification Results
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Comprehensive H1 Clade Annotations in IRD
4/18/2017 Influenza Research Database - A/Minnesota/14/2012 - HA Hemagglutinin - KJ620415
https://www.fludb.org/brc/fluSegmentDetails.spg?ncbiGenomicAccession=KJ620415&decorator=influenza 1/3
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Complete Genome Set: Yes
Organism Name: Influenza A Virus
Strain Name: A/Minnesota/14/2012 View Strain Details
Subtype: H1N2
Global Swine H1 Clade(SOP):
1B.2.2.2
US Swine H1 Clade(SOP): delta1
2009 Pandemic H1N1like(SOP) ?:
Mixed Positive and Negative Segments
Host: Human
Collection Date: 12/2012
Flu Season (SOP): 1213
Isolation Country: USA
GenBank SubmissionDate:
04/19/2014
NCBI Taxon ID: 1479037
GenBank Header Notes:
GenBank Accession Numbers KJ620412KJ620419 represent sequences from the 8segments of Influenza A virus(A/Minnesota/14/2012(H1N2)).##AssemblyDataSTART## AssemblyMethod :: Lasergene DNA Star v. 10Sequencing Technology :: ABI 3730xl DNAAnalyzers ##AssemblyDataEND##
SNP (SOP)SNP Details
Consensus # insertions comparedwith consensus
# deletions comparedwith consensus
# mismatches comparedwith consensus
Host: Human; Subtype: H1N2; Segment: 4 0 0 68
Influenza Segment/Protein Details
Segment: KJ620415
Strain Information | Segment Information | SNP Details | Annotation | References | Data Sources |
Protein: HA Hemagglutinin
Protein Information | Isoelectric Pt/Molecular Weight | Pfam Domain | Pfam Motifs | Predicted Epitopes | Gene Ontologies | Database Cross References | Our curation pipeline has not identified potential sequence artifacts in KJ620415 by alignment to A/4/H1 profile.
Strain Information*1
Segment Information*1
Genbank Source SequenceAccession:
KJ620415
Definition: Influenza A virus (A/Minnesota/14/2012(H1N2)) segment 4hemagglutinin (HA) gene, complete cds.
Authors: Duff,M.A., Ma,J., Ma,J., Hesse,R.A., Sloan,H. and Ma,W.
Segment Number: 4
Segment Length: 1698
Complete Coding Sequence: Complete
2009 Pandemic H1N1like (SOP) ? No
Sequence: View Sequence and design PCR primers
Segment Annotation*1Protein Name Complete Sequence CDS Start CDS End Protein Length (aa) Source View Sequence and Design Primers
HA Hemagglutinin Complete 1 1698 565 GenBank Nucleotide
Home Swine H1... Results Strain Details (A/Minnesota/14/2012) Segment Details (A/Minnesota/14/2012 Seg. 4)
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1A 1B 1C Other
1A.3.3.2 (pdm09)1A.3.3.3
…
1B.2.11B.2.2.11B.2.2.2
Other-Human-1B.2 …
1C.2.11C.2.3
…
22167 H1 viruses of all hosts
Sequence Search by H1 Clade6/20/2017 Influenza Research Database - Sequence Search
https://www.fludb.org/brc/influenza_sequence_search_segment_display.spg?method=ModifySearch&selectionContext=1498011283147 1/1
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Release Date: May 23, 2017
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials. This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
DATA TYPEGenome SegmentsProteinStrain
VIRUS TYPEABCProvisional Influenza D
(PMID:24595369)
SUBTYPE
* Use comma to separate multipleentries.Ex: H1N1, H7, H3N2.
STRAIN NAME
* Use comma to separate multipleentries. Ex: A/chicken/Israel/1055/2008,A/chicken/Laos/16/2008.
DATE RANGEFrom: YYYY To: YYYY
To add month to search, seeAdvance Options: Month Range
Complete Genome Only
COMPLETE GENOME
SELECT SEGMENTS Complete?
All PB2 PB1 PA HA NP NA MP NS
CLADE CLASSIFICATION None Global H1 Clade (SOP)
US H1 Clade (SOP) H5 Clade (SOP) 2009 pH1N1 Sequence Similarity
(SOP)
HOST GEOGRAPHIC GROUPING
COUNTRY
ADVANCED OPTIONS
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Results matching your criteria: 1,514
Tip: To select multiple or deselect, Ctrlclick (Windows) or Cmdclick (MacOS)
Show All
Nucleotide Sequence Search Search for influenza sequences, proteins, and strains using two types of searches. Use the advanced search to allow you to refine your search with the more fine grainedsearch, and you can pick your viewing options.
1B.2.2 1B.2.2.1
1B.2.2.2 1B.2.2like
Swine North America
South America
Choose a Country...
Home Nucleotide Sequence Search
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6/20/2017 Influenza Research Database - Sequence Search
https://www.fludb.org/brc/influenza_sequence_search_segment_display.spg?method=ModifySearch&selectionContext=1498011283147 1/1
Loading Influenza Research Database...
Release Date: May 23, 2017
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials. This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
DATA TYPEGenome SegmentsProteinStrain
VIRUS TYPEABCProvisional Influenza D
(PMID:24595369)
SUBTYPE
* Use comma to separate multipleentries.Ex: H1N1, H7, H3N2.
STRAIN NAME
* Use comma to separate multipleentries. Ex: A/chicken/Israel/1055/2008,A/chicken/Laos/16/2008.
DATE RANGEFrom: YYYY To: YYYY
To add month to search, seeAdvance Options: Month Range
Complete Genome Only
COMPLETE GENOME
SELECT SEGMENTS Complete?
All PB2 PB1 PA HA NP NA MP NS
CLADE CLASSIFICATION None Global H1 Clade (SOP)
US H1 Clade (SOP) H5 Clade (SOP) 2009 pH1N1 Sequence Similarity
(SOP)
HOST GEOGRAPHIC GROUPING
COUNTRY
ADVANCED OPTIONS
SearchClear
Results matching your criteria: 1,514
Tip: To select multiple or deselect, Ctrlclick (Windows) or Cmdclick (MacOS)
Show All
Nucleotide Sequence Search Search for influenza sequences, proteins, and strains using two types of searches. Use the advanced search to allow you to refine your search with the more fine grainedsearch, and you can pick your viewing options.
1B.2.2 1B.2.2.1
1B.2.2.2 1B.2.2like
Swine North America
South America
Choose a Country...
Home Nucleotide Sequence Search
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Data Analysis and Visualization Based on H1 Clade
6/21/2017 Influenza Research Database - Metadata-driven Comparative Analysis Tool (meta-CATS) - Setup Subset
https://www.fludb.org/brc/mgc.spg 1/1
Loading Influenza Research Database...
Release Date: May 23, 2017
This system is provided for authorized users only. Anyone using this system expressly consents to monitoring while using the system. Improper use of this system may be referred to lawenforcement officials. This project is funded by the National Institute of Allergy and Infectious Diseases (NIH / DHHS) under Contract No. HHSN272201400028C and is a collaboration between NorthropGrumman Health IT, J. Craig Venter Institute, and Vecna Technologies.
113 sequencesAdd | Remove
126 sequencesAdd | Remove
RunClear
MAIN LIST OF SEQUENCESHA|N/A|N/A|A/swine/Iowa/A01932394/2017|ARJ63955HA|N/A|N/A|A/swine/Iowa/A02214243/2017|ARU07169
LIST OF SEQUENCES GROUP 1
LIST OF SEQUENCES GROUP 2
HA|N/A|N/A|A/Wisconsin/88/2016|APH11078HA|N/A|N/A|A/Montana/54/2016|APH11102HA|N/A|N/A|A/Montana/51/2016|APH11145HA|N/A|N/A|A/California/138/2016|APH11198HA|N/A|N/A|A/Wyoming/31/2016|APH11241HA|N/A|N/A|A/Delaware/29/2016|APO20313HA|N/A|N/A|A/Pennsylvania/91/2016|APO20335
HA|N/A|N/A|A/swine/South Dakota/A01678471/2016|APF29921HA|N/A|N/A|A/swine/Iowa/A01782389/2016|APG56845HA|N/A|N/A|A/swine/Iowa/A01782580/2016|APG56857HA|N/A|N/A|A/swine/North Carolina/A01782500/2016|APG56863HA|N/A|N/A|A/swine/Iowa/A01782237/2016|APG56871HA|N/A|N/A|A/swine/Iowa/A01782394/2016|APG56875HA|N/A|N/A|A/swine/Minnesota/A01782585/2016|APG56827
Metadata-driven Comparative Analysis Tool (meta-CATS) - Setup SubsetMouse click on the sequences to select them, Ctrl and/or shift key enable the multiple selection. After selecting the sequences, click on "Add" to move into the group. "Remove"will send the selected sequences back to the main list.
Auto grouping on: Global Swine H1 CladeGroup1: 1A.3.3.2 113
Group2: 1A.3.3.3 126
Home Protein Sequence Search Results Metadatadriven Comparative Analysis Tool for Sequences (metaCATS)
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Christian Zmasek. Archaeopteryx.js. Monday 9:45-10 pm, Viral evolution and Ecology I - W37-10
Summary
A web-based, automated H1 clade classification tool
Comprehensive H1 clade annotations
H1 clade based analysis and visualization
Acknowledgements
Amy VincentTavis Anderson
Catherine Macken
Nicola Lewis
Thomas SmithEd Klem
Richard Scheuermann
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