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StrainInfo.net
Integrating the Microbiological Commons
Developing Information Commons for Science in EuropeCODATA-Science Commons, The Academy Palace, Brussels, 15th september 2006
Peter DawyndtTom Dedeurwaerdere
WFCC
?
An emerging information jungle
Focus on integration
Focus on integration
specimenknuckle
sequenceknuckle
literatureknuckle
taxonomyknuckle
Divide-and-conquer strategies
specimenknuckle
sequenceknuckle
literatureknuckle
taxonomyknuckle
Divide-and-conquer strategies
specimenknuckle
sequenceknuckle
literatureknuckle
taxonomyknuckle
StrainInfo.net bioportal scope
WFCC
Biodiversity hotspots
T. Gibson (971)
W.W. Ford (13)
original isolate
GUID:new isolate
GUID:NCTC 2599
GUID:ATCC 14579
GUID:Gibson 971
GUID:Ford 13
GUID:NCIMB 9373
first BRC deposit
NCIMB 9373
NCTC 2599
NRRL B-3711
ATCC 14579
strain number equivalence relationstrain deposit history relation
strain number resolution (disambiguation)BRC resolution (online catalogues)
isolate entities culture entities
new isolate
Registration Authority
Accession form
Accession form
Accession form
Accession form
end user
end user
end user
GUID:NRRL B-3711
Domain-specific regulatory bodies
Product Development
Genetic screening
Local users communities
Ecosystems that produce diversity
The science commons in the bio-economyThe science commons in the bio-economy
Social legitimacy : Build trust and new beliefs as a Social legitimacy : Build trust and new beliefs as a basis for cooperation between the actorsbasis for cooperation between the actors
Economic efficiency : Documenting the flow of Economic efficiency : Documenting the flow of resources through the entire innovation chainresources through the entire innovation chain
Institutional design : two tiered system
Licensing negotiation
Copyleft license
Collective management organisation : ex ante
negotiation of the contractual template
Third party
Other open science users
Commercial licenseCommercial
firm
Proprietary R&D
KeyData
Tom Dedeurwaerdere, “The Institutional Economics of Sharing Biological Information”, International Social Science Journal , forthcoming, fall 2006.
Reflexive Governance : organising the feedback of Reflexive Governance : organising the feedback of the actors on the institutional designthe actors on the institutional design
Origin Border authority
or national institutions
BRC / source
End users
Country of origin
1 numerical identifier
Database containing :
• numerical identifiers
• + in metadata : info on country of origin
Example : sector specific negotiation of tracking system (IPEN, Mosaicc, Kew Garden, etc.)
Tom Dedeurwaerdere, "Bioprospecting, intellectual property law and evolutionary economics: the stake of a theory of reflexive governance", in Innovative Roles of Biological Resources Centres, WFCC, 2004..
Jean Swings
Bernard De Baets Peter Dawyndt
Xianhua Zhou
Juncai Ma
S T R A I N I N F O N E T
Paul De Vos
Tom Dedeurwaerdere Philippe Desmeth
Bart Vanbrabant
A “semantic web”-enabled bioportal for integrating microbial information into global
bioinformatics networks