Stem cells (SC): low frequency, not accessible to direct observation
description
Transcript of Stem cells (SC): low frequency, not accessible to direct observation
Stem cells (SC): low frequency, not accessible to direct observation
provide inexhaustible supply of cells
Progenitor cells (PC): immediate downstream of SC, identifiable with cell surface markers, provide a quick proliferative response
Terminally differentiated cells: mature cells, represent a final cell type, do not divide
All cell types are susceptible to death
Renewing Cell Population
Example of renewing cell systems
• Development of Oligodendrocytes
• Kinetics of Leukemic cells
To: Stem cell
T1: Glial-restricted precursor (GRP)
T2: oligodendrocyte/type-2 astrocyte (O-2A)/oligodendrocyte precursor cell (OPC) (O-2A/OPC)
To: Leukemic stem cell (LSC)
T1: Leukemic progenitor (LP)
T2: Leukemic blast (LB)
Age-dependent Branching Process of Progenitor Cell Evolution without Immigration
• Evolution of an individual PC from birth to leavingEvery PC with probability p has a random life-time
with probability 1 - p it differentiates into another cell type
At the end of its life, every PC gives rise to v offsprings
v characterized by pgf
generally,
it takes a random time for differentiation to occur
• Stochastic processes Z(t), Z(t, x)
Z(t) ~ total number of PCs
Z(t, x) ~ number of PCs of
note that if then,
• pgfs of Z(t) , Z(t, x)
• Applying the law of total probability (LTP)
• Using notations:
with initial conditions:
• From (1) and (2):
with initial conditions :
• (3) is a renewal type equation with solution:
where,
and is the k-fold convolution
renewal function
Renewal-type Non-homogeneous Immigration• Let Y(t) be the number of PCs at time t with the same ev
olution of Z(t) in the presence of immigration
Y(t, x) number of PCs of
• pgfs of Y(t) and Y(t, x)
with initial conditions• time periods between the successive events of immig
ration: i.i.d, r.v.’s with c.d.f.
at any given t, number of immigrants is random with distribution
• pgf of number of immigrants at time t
mean number of immigrants at time t
• Applying LTP
(10)
(11)
with initial conditions:
•
(12)
(13)
with initial conditions: • Whenever is bounde
d, (12) has a unique solution which is bounded on any finite interval
• The solution is:
where is the renewal function
Neurogenic Cascade
d apoptosis rate
rate of G2M in
ANP2
differentiating into
NB
Modeling of Neurogenesis
11 11
12 12
13 13
21 21
22 22
23 23 23
31 31
32 32
33 33
4
0 1 0 0
0 1 0 0
0 2(1 ) 0 0
0 1 0 0
0 1 0 0
0 2(1 )(1 ) 0 2 (1 )
0 1 0 0
0 1 0
0 2(1 )
0
0 0 0
d d
d d
d d
d d
d d
m d d d
d d
d d
d d
d
The m matrix where mik is the expected number of progeny of type k at time t of a cell of type i
dij is the probability of its corresponding type of cells committed to apoptosis, is the chance that cell differentiated to NB directly from the phase G2M in the process of ANP2
232 (1 )d
Model Construction
• We obtain the fundamental solution of the model
where M is a matrix, with number of cells at time t in compartment j,
given the population was seeded by a single cell in compartment i
*
00
1
( ) [ ( , ) ] * [ ( , )]
= ( ( ))
tk
k
t
x
M t x G t x m I G x d
I m I G d
,
0
* )(*)(k
k GIGmM
under physiological conditions, the system is fed by a stationary influx of freshly activated ANPs, which may be represented by a Poisson process with constant intensity ω per unit of time, thus we obtain
~
11 11
~
12 12
~
13 13
~
21 21
~
22 22
~ ~ ~
23 23 23
~
31 31
~
32 32
~
33 33
4
1 0 0
1 0 0
1 2 0 0
1 0 0
1 0 0
1 2 0 2
1 0 0
1 0
1 2
1
0 1
d d
d d
d d
d d
d d
I m d d d
d d
d d
d d
d
To calculate the stationary distribution of M we need to derive the inverse matrix of I-m
The inverse of an upper triangular matrix is also an upper triangular matrix
1 2 3 4 5 6 7 8 9 1
3 5 6 7 8 92 42
1 1 1 1 1 1 1 1 1
3 5 6 7 8 943
2 2 2 2 2 2 2 2
5 6 7 8 944
3 3 3 3 3 3 3
5 6 7 8 95
4 4 4 4 4 4
6 7 8 916
5 5 5 5 5
7 8
6
1
0 1
0 1
0 1
0 1
0 1( )
0 1
A A A A A A A A A B C
A A A A A AA A BC
A A A A A A A A A
A A A A A AA BC
A A A A A A A A
A A A A AA BC
A A A A A A A
A A A A A BC
A A A A A A
A A A A BCI m
A A A A A
A A
A
97
6 6
8 98
7 7
99
8
4
0 1
0 1
0 1
0 0 1
AC
A A
A AC
A A
AC
A
d
~
1 11
~ ~
2 11 12
~ ~ ~
3 11 12 13
~ ~
4 11 21
~ ~
5 11 22
~ ~ ~
6 11 23
~ ~ ~
7 11 31
~ ~ ~
8 11 32
~ ~ ~
9 11 33
~ ~ ~
11 23
2
2
2
4
4
4
4
4
A d
A d d
A d d d
A d d
A d d
A d d
A d d
A d d
A d d
B d d
1 11
2 1 12
3 2 13
4 3 21
5 4 22
6 5 23
7 6 31
8 7 32
9 8 33
10 9 4
11 4
D d
D Ad
D A d
D A d
D A d
D A d
D A d
D A d
D A d
D A d
D Bd
11
11
11
221
11
332
11
443
11
554
11
665
10
776
10
887
9 9 108
1
1
1
1
1
1
1
1( )
ii
ii
ii
ii
ii
ii
ii
ii
C D
C DA
C DA
C DA
C DA
C DA
C DA
C DA
C D DA
Parameters in the inverse matrix are defined as
Example
• A computational example in simulating pulse labeling experiment with parameters
T1=10 hr, T2=8 hr, T3=4 hr, T4=96 hr, T5=1hr, dij=0.15, α=0.5
Total Number of Cells Labeled
0
500
1000
1500
2000
2500
3000
6h 18h 2d 4d 6d 8d 10d 12d
Time
Nu
mb
er
of C
ells
-500
0
500
1000
1500
2000
2500
2h 12h 1d 2d 3d 5d 7d 10d 15d 30d
BrdU total
QNPs/astros
ANPs
NBs
GCs
Number of cel l s l abel ed
0
500
1000
1500
2000
2500
3000
1 26 51 76 101 126 151 176 201 226 251 276
ti me/ hrs
# ce
lls NB
ANeuronANPs
Comparison suggests non-identical distribution of the mitotic cycle duration for amplifying neuroprogenitors (ANP) and unevenly distributed cell death rates