Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik,...

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Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität Münster

Transcript of Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik,...

Page 1: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

Some Aspects of Surface Diffusion

Martin Burger

Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS

Westfälische Willhelms-Universität Münster

Page 2: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Outline Introduction: Motivation, Applications of Surface Diffusion

Strong anisotropies: Including strong anisotropies, curvature regularization, equilibria, dynamics, numerical simulation

Adatom diffusion: Change from 4th order to 2nd order system, change of equilibria, numerical simulation

Chemotaxis: limiting behaviour of packed cell densities

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Frank Hausser, Christina Stöcker, Axel Voigt (CAESAR Bonn)

Christian Schmeiser, Yasmin Dolak-Struss (Universität Wien)

Collaborations

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Surface diffusion processes appear in various materials science applications, in particular in the (self-assembled) growth of nanostructures

Schematic description: particles are deposited on a surface and become adsorbed (adatoms). They diffuse around the surface and can be bound to the surface. Vice versa, unbinding and desorption happens.

Introduction

Page 5: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Various fundamental surface growth mechanisms can determine the dynamics, most important:

- Attachment / Detachment of atoms to / from surfaces

- Diffusion of adatoms on surfaces

Growth Mechanisms

Page 6: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Other effects influencing dynamics:- Anisotropy

- Bulk diffusion of atoms (phase separation)

- Exchange of atoms between surface and bulk

- Elastic Relaxation in the bulk

- Surface Stresses

Growth Mechanisms

Page 7: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Other effects influencing dynamics:

- Deposition of atoms on surfaces

- Effects induced by electromagnetic forces (Electromigration)

Growth Mechanisms

Page 8: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Isotropic Surface Diffusion Simple model for surface diffusion in the isotropic case:

Normal motion of the surface by minus surfaceLaplacian of mean curvature

Can be derived as limit of Cahn-Hilliard model with degenerate diffusivity (ask Harald Garcke)

Page 9: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Level Set / Graph Formulation Level set function or graph parametrization u of surface determined from

-

(graph)

(level set)

@tu = ¡ div(P r · )

· = div( r uQ)

P =Q(I r uQ

­ r uQ)

Q=p1+ jr uj2

Q = jr uj

Page 10: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Level Set Formulation We have to deal with fourth-order equation, no maximum principle

No global level set formulation

Efficient computations and proofs still widely open (One of the „major mathematical challenges in materials science“, Jean Taylor, AMS, 2002 / Robert Kohn, SIAM, 2002)

Page 11: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Applications: Nanostructures SiGe/Si Quantum Dots

Bauer et. al. 99

Page 12: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Applications: Nanostructures SiGe/Si Quantum Dots

Page 13: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Applications: NanostructuresInAs/GaAs Quantum Dots

Page 14: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Applications: Nano / Micro Electromigration of voids in electrical circuits

Nix et. Al. 92

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Applications: Macro Formation of Basalt Columns:

Giant‘s Causeway

Panska Skala (Northern Ireland) (Czech Republic)

See: http://physics.peter-kohlert.de/grinfeld.htmld

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The energy of the system is composed of various terms:

Total Energy =

(Anisotropic) Surface Energy +

(Anisotropic) Elastic Energy +

Compositional Energy +

.....

We start with first term only

Energy

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Surface energy is given by

Standard model for surface free energy

Surface Energy

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Chemical potential is the change of energy when adding / removing single atoms

In a continuum model, the chemical potential can be represented as a surface gradient of the energy (obtained as the variation of total energy with respect to the surface)

For surfaces represented by a graph, the chemical potential is the functional derivative of the energy

Chemical Potential

Page 19: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Surface diffusion appears in many important applications - in particular in material and nano science

Growth of a surface with velocity

Surface Diffusion

Page 20: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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F ... Deposition flux Ds .. Diffusion coefficient... Atomic volume ... Surface density k ... Boltzmann constant T ... Temperature n ... Unit outer normal ... Chemical potential =

energy variation

Surface Diffusion

Page 21: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Isotropic / Weakly Anisotropic:- Existence results Elliott-Garcke 1996

- Numerical simulation Bänsch-Morin-Nocchetto 2003, Deckelnick-Dziuk-Elliott 2004

Anisotropic: - Studies of equilibrium structures, Gurtin 1993, Spencer 2003, Cecil-Osher 2004

- Numerical simulation of asymptotic model (obtained from long-wave expansion), Golovin-Davies-Nepomnyaschy 2002 / 2003

Analysis and Simulation

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In several situations, the surface free energy (respectively its one-homogeneous extension) is not convex. Nonconvex energies can result from different reasons:

- Special materials with strong anisotropy: Gjostein 1963, Cahn-Hoffmann1974

- Strained Vicinal Surfaces: Shenoy-Freund 2003

Surface Energy

Page 23: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Effective surface free energy of a compressively strained vicinal surface (Shenoy 2004)

Surface Energy

Page 24: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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In order to regularize problem (and possibly since higher order terms become important in atomistic homogenization), curvature regularization has beeen proposed by several authors (DiCarlo-Gurtin-Podio-Guidugli 1993, Gurtin-Jabbour 2002, Tersoff, Spencer, Rastelli, Von Kähnel 2003)

Curvature Regularization

Page 25: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Cubic anisotropy

surface energy becomes non-convex for

> 1/3

- Faceting of the surface

- Microstructure possible without curvature term

- Equilibria are local energy minimizers only

Anisotropic Surface energy°0(n) = 1+²

Pn4j

Page 26: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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We obtain

Energy variation corresponds to fourth-order term (due to curvature variation)

Chemical Potential

Page 27: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Derivative

with matrix

Curvature Term

Page 28: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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SD can be obtained as the limit ( →0) of minimization

subject to

Minimizing Movement: SD

Page 29: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Level set version:

subject to

Minimizing Movement: SD

Page 30: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Basic idea: Semi-implicit time discretization +

Splitting into two / three second-order equations +

Finite element discretization in space

Natural variables for splitting:

Height u, Mean Curvature , Chemical potential (denoted u, v, w in the following)

Numerical Solution

Page 31: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Based on variational principle, minimizing movement

subject to

Time Discretization

Page 32: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Quadratic approximation of the convex terms in the energy, linear approximation of the non-convex terms around u(t)

Rewrite local variational problem as minimization over u, v, and w With constraints defining v and w

KKT condition yields indefinite linear system,

Lagrangian variables are multiples of v and w

Time Discretization

Page 33: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Discretization of the variational problem in space by piecewise linear finite elements

and P(u) are piecewise constant on the triangularization, all integrals needed for stiffness matrix and right-hand side can be computed exactly

Spatial Discretization

Page 34: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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After few manipulations we obtain indefinite linear system for the nodal values

A stiffness matrix from diffusion coefficient 1/Q B stiffness matrix from diffusion coefficient P/Q M mass matrix for identity, C mass matrix for 1/Q

Iterative solution by multigrid-precond. GMRES

Discrete Problem

Page 35: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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SD = 3.5, = 0.02,

Page 36: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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SD = 1.5, = 0.02,

Page 37: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Faceting Graph Simulation: mb JCP 04, Level Set Simulation: mb-Hausser-Stöcker-Voigt 06

Adaptive FE grid around zero level set

Page 38: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Faceting Anisotropic mean curvature flow

Page 39: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Faceting of Thin Films Anisotropic

Mean Curvature

Anisotropic Surface Diffusion

mb 04, mb-Hausser-

Stöcker-Voigt-05

Page 40: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Faceting of Bulk Crystals Anisotropic surface diffusion

Page 41: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Standard surface diffusion models have some strange aspects, in particular for nanostructures / epitaxy: - No kinetic effects

- Problems with topology change (atoms can only hop on single surface, not on a second one, even for small distances)- They do not correspond to the atomistic picture

Modelling Aspects

Page 42: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Standard Description (e.g. Pimpinelli-Villain):

- (Free) Adatoms hop on surfaces

- Coupled with attachment detachment kinetics

for the surface atoms on a crystal lattice

Atomistic Models on (Nano-)Surfaces

Page 43: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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From Caflisch et. Al. 1999

Atomistic Models on (Nano-)Surfaces

Page 44: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Need two equations for two coupled processes

Need diffusion equation for adatoms

Modelling

Page 45: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Explicit model for surface diffusion including adatoms Fried-Gurtin 2004, mb 2006 Adatom density , chemical potential , normal velocity V, tangential velocity v, mean curvature , bulk density

Kinetic coefficient b, diffusion coefficient L, deposition term r

Modelling

Page 46: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Surface free energy is a function of the adatom density Chemical potential is the free energy variation

Surface energy:

Surface Free Energy

Page 47: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Relation to standard surface diffusion: convergence as the cost of free adatoms (in the surface free energy tends to infinity)

Modelling

Page 48: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Equilibrium shapes minimize the surface energy

at constant mass

Equilibrium Shapes

Page 49: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Equilibrium films: minimum at vanishing adatom density, flat surface. Same as without adatoms.

Equilibrium crystals: Wulff shape with vanishing adatom density is NEVER an equilibrium ! Isotropic equilibrium has nonzero adatom density and smaller radius than Wulff shape

Equilibrium Shapes

Page 50: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Model free energy

Parameter measures the cost of free adatoms

Equilibrium Crystals (Isotropic)

Page 51: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Equilibrium radius

Equilibrium Crystals (Isotropic)

Page 52: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Different regimes for surface energy:

- Convex for small adatom densities and shapes close to equilibrium

- Nonconvex for large adatom densities and shapes far away from equilibrium. The surface energy is consequently not lower semicontinuous

Surface Energy

Page 53: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation

Page 54: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation

Page 55: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation

Page 56: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation Flat initial shape, nonhomogeneous deposition

Page 57: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation - Surfaces

Page 58: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Numerical Simulation - Surfaces

Page 59: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Keller-Segel Model with small diffusion and logistic sensitivity

Sensitivity function for quorum sensing derived by Painter and Hillen 2003 from microscopic model

Page 60: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Keller-Segel Model with small diffusion and logistic sensitivity: Plateau formation

Page 61: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Keller-Segel Model with small diffusion and logistic sensitivity: Plateau motion

Page 62: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Keller-Segel Model with small diffusion and logistic sensitivity

Asymptotics at hyperbolic time-scale

Page 63: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Limit is a nonlinear, nonlocal conservation law: we need entropy solutions

Entropy inequality

Page 64: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Stationary solutions

These are entropy solutions iff

Page 65: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Asymptotics for large time by time rescaling

Look for limiting solutions

Page 66: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Asymptotic expansion in interfacial layer (as for Cahn-Hilliard)

Note: entropy condition

Page 67: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis We obtain a surface diffusion law with diffusivity

and chemical potential

Corresponding energy functional

D = ¡ 2@n S

¹ = ¡ S2 = ¡ S[­ ]

2

Page 68: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Flow is volume conserving

Flow has energy dissipation property

Page 69: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Stability of stationary solutions can be studied based on second (shape) variations on the energy functional

Stability condition for normal perturbation

Instability without entropy condition ! Otherwise high-frequency stability, possible low-frequency instability

Page 70: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Instability

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Chemotaxis Instability

Page 72: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Instability

Page 73: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Surface Diffusion

Page 74: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Surface Diffusion

Page 75: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Chemotaxis Surface Diffusion, 3D

Page 76: Some Aspects of Surface Diffusion Martin Burger Institut für Numerische und Angewandte Mathematik, Center for Nonlinear Science CeNoS Westfälische Willhelms-Universität.

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Download and Contact Papers and Talks: Anisotropy: mb, JCP 2005

mb-Hausser-Stöcker-Voigt JCP 2007

Adatoms: mb, Comm. Math. Sci. 2006

Chemotaxis: mb-DiFrancesco-DolakStruss, SIMA 2007 mb-DolakStruss-Schmeiser, Preprint, 2006

www.math.uni-muenster.de/u/burger

e-mail: [email protected]