Soft Matter Simulation of Cell Motility
Transcript of Soft Matter Simulation of Cell Motility
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Soft Matter Simulation of Cell Motility
Department of Civil and Environmental Engineering
University of California at Berkely
HOUFU FAN and SHAOFAN LI
Banff, Canada, September 1st, 2016
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I. Introduction
Ligand-receptor interactions
Ning Wang et al. Natural Reviews Molecular Cell
Biology [2009]
Liquid like medium
Cytoskeleton
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II. How to model Cytoskeleton ?
Cell cytoskeleton
intermediate
filaments
actin
filaments
microtubules
cytoskeleton
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How to model actin filament:
(ATP) Hydrolysis of Actin filaments
Dynamics of the actin-filaments
cleft
Actin-filament is polarized because the cleft is always towards the minus end.
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Hydrodynamics of active polar gel
liquid
polarity
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Active stress
6
(a) Active Stress (b) Total stress response
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We are modeling microtubles as
liquid crystal elastomer.
Actomyosin molecules in a cell Mesogen in nematic LCE
GTP Hydrolysis
Modeling Microtubles and actin filaments
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III. Multiscale Moving Contact Line Theory
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Conventional mving contact-line theory and
Multiscale moving contact-line theory
Basic Idea
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Multiscale contact/adhesion model
Repulsion Attraction
Kinematics Lennard-Jones Potential
Rapid Decay
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Variational Principle
Principle of virtual Work Interaction Potential
Adhesive Body Forces
Variation
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Method 1 Method 2 : Project volume integration onto surface
Interaction Force Vector
Convert body-to-body interaction into
Surface-to-surface interaction:
Derjaquin Approximation
For LJ potential
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Surface Stress Tensor
Fan and Li [2015] JCP
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Surface stress
An Elasto-hydrodynamics Interface Theory
Morton E. Gurtin A. Ian Murdoch
An Extension of the Gurtin-Murdoch Surface Elasticity Theory
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This equation can be derived from diffused interface theory
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Li and Fan [2015], Proc. R. S.
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A Simple Case
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Cell/Air boundary(surface tension)
0 cell/air, t n n x
The resulting traction,
div n
mean curvature,
1
1 2;T
n F N N C N
unit out-normal,
imbalanced
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Pure Surface Tension Action
Li and Fan [2015], Proc. R. S.
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Comparison of dynamic contact angles between MMCL and MD
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Softer Substrate
Stiffer Substrate
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Fan and Li [2015] BMMB
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(a) 100 Pa gel substrate (b) Collagen coated glass (10 KPa)
(Ms. An-Chi Tsou and Dr. Song Li)
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