Science and Web 2.0: Social Bookmarking (May 2006)
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Social bookmarking
EMBL Centre for Computational Biology
30th of May, 2006Michael Kuhn
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briefly: my motivation
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one year of social
bookmarking
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before: over 100 bookmarks in browser
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now: only 11 (my toolbar)
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over 300 links in
del.icio.us, organized with
tags
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conceptsexamples
science 2.0references
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remember the Yahoo! catalog?
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bookmarks: a similar hierarchy
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taxonomy
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taxonomyfolk
s
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tags
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a tag is a keyword you
assign intuitively
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Hierarchy Tags
Eukaryota Metazoa Chordata Craniata Vertebrata Euteleostomi Mammalia … Hominidae Homo
homoprimateeukaryotevertebratemammal
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ComparisonHierarchy Tags
fixed framework, created
beforehand
dynamic and created on the
spot
logical description
intuitive description
only one categorycan have many
tags
filing is slow tagging is fast
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conceptsexamples
science 2.0references
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analyze tags and cluster
them
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social bookmarking in
academia
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keywords are already there!
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keywords are not in PubMed
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instead:Medical Subject Headings
(MeSH terms)
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let readers describe the paper: tagging
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managing your references:how does it
work?
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CiteULike
Nature Publishing Group
one-man project
links and papers/books
mainly papers/books
partially imports bibliographic data
fully imports bibliographic
data
can keep posts private (optional:
until date)
all posts are public
API to access the data from other
tools no API yet
supports tag intersections
no tag intersections, but can store
PDFs
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there are many social bookmarking
sites
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social bookmarking
and collaboration
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summary of this section
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Social bookmarking:… helps you to manage and
organize your references… lets you follow the
references of people you know or trust
… generates recommendations of interesting references for you (but don’t expect wonders yet)
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conceptsexamples
science 2.0references
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you gain: a fast way to
store and retrieve
information
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you get: assistance in finding new
papers
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you profit:from the insight of other people
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you give: your
bibliography (your selection
of publicly available
information)
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conflict between advancing
knowledge and advancing your
career
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possible disadvantage:
another scientist
discovers an article earlier
(or at all)
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possible disadvantage:someone might
deduce what you are working on
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you have to decide if you
want to contribute
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(but I think it is worth it)
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(also, you can keep your bookmarks
private for some time in Connotea)
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take-home message
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With social bookmarking …
… you can better keep track of your links and references
… you implicitly share knowledge with other scientists
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Next Tuesday:
Stop emailing huge files: How to
jointly edit manuscripts and share data
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conceptsexamples
science 2.0references
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About social bookmarking:
A two-part review and introduction: http://www.dlib.org/dlib/april05/hammond/04hammond.html and http://www.dlib.org/dlib/april05/lund/04lund.html
Wikipedia articles: http://en.wikipedia.org/wiki/Social_bookmarking, http://en.wikipedia.org/wiki/Tags, http://en.wikipedia.org/wiki/Folksonomy
Scientific social bookmarking:
CiteULike: http://www.citeulike.org/
Connotea: http://www.connotea.org/
General social bookmarking services:
del.icio.us: http://del.icio.us
Flickr: http://www.flickr.com/
(plus many others)
Other links:
NCBI taxonomy: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Taxonomy
Medical Subject Headings: http://www.nlm.nih.gov/mesh/