SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery...

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Transcript of SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery...

Page 1: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.
Page 2: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

SABLE’S SCOPEWho We Are

• Founded by John R.B. Lighton, Ph.D.• 25 years of scientific discovery• Tools for understanding – with a respirometry focus• Scientists and engineers still active in research• Growing at 25% for last 4 years• Growing at over 45% in 2011• Fueled by Promethion

Page 3: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

SABLE’S GLOBAL INFLUENCE

Page 4: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

Sable’s Promethion InspirationCUSTOMER REQUESTS:

Turnkey Solution

Fully Integrated

Live-in Cages with Bedding

Fully Traceable Data

Running Wheel

Expertise

High Throughput

Scalable

Accurate

User Friendly

No air tight seal

Good Customer Service

Customizable Analysis

No Chemical Desiccants

Page 5: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

MARKET RESEARCH: Competition

• Black box calculations• No raw data storage or data traceability• Customer service• Difficult to use• Very complex to set up

The Good

• Widely used and cited• Integrated system• High Throughput

The Bad

• Small, not live-in cages• No bedding in cages• Very low flow rates (IACUC)• Accuracy concerns• No integrated running wheels

The Ugly

Page 6: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

METABOLIC SCREENING

Page 7: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

EXISTING CUSTOMERS

Page 8: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

THE CAGE…

Page 9: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD INTAKE

Food Intake Monitor

Features

• 3mg resolution• Crumb tray reduces caching• Real-time measurement

• Universal Load Cell• Mouse or Rat hopper

Advantages

• Increased accuracy, versatility• Fine granularity gives insight into behavioral patterns

Page 10: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD INTAKERaw Feeding Data

• Stores hopper mass vs. time• Recorded to disc at 1Hz

One Feeding Episode

• Analyze behavior• Determine individual feeding episode intake rates

Page 11: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD INTAKESummarized Feeding Data

• Identify trends and outliers• Can zoom into any event• Automated uptake analysis• Automated meal analysis

One Feeding Episode

• Analyze behavior• Unprecedented detail available – but only if required

Page 12: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD INTAKEProcessed Feeding Data

• Outputs cumulative intake vs. time• Shows rate of intake, structure• Can output binned data• Integrates with other cage data• Fully traceable

Food Selection

• Determine food preference• Control access to either/both foods• Integrates with other cage data

Page 13: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD INTAKE ANALYSIS

Page 14: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD ACCESS CONTROL

Access Control Module

Features

• Computer controlled access to food• Available for Mouse or Rat food hoppers• Intelligent Obstruction Detection

• Access Control Door• Connects to mass sensor

Advantages

• Reduced technician interaction • Customizable assays (paired/yoked)

Page 15: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

FOOD ACCESS CONTROLUser Friendly Setup

• Select from 8 preset assays• Customize time and duration• Individual cage setup

Select Access Control Type

• Add to your custom assay• Unlimited number of variations

Page 16: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

WATER INTAKE

Water Intake Monitor

Features

• 3 µL resolution• Real-time measurement• Stainless steel case (not shown) reduces animal interaction• Custom sipper tube reduces leakage

• Universal Load Cell• Mouse or Rat dispenser models

Advantages

• Increased accuracy• Increased granularity gives insight into behavioral patterns• Use existing sterilizing systems

Page 17: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

WATER INTAKERaw Drinking Data

• Stores bottle mass vs. time• Recorded to disc at 1Hz

Processed Drinking Data

• Analyze behavior• Mathematical drift elimination

• Determine individual episode intake rates• EthoScan Compatible

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BODY MASS

Body Mass Monitor

Features

• 3mg resolution• Real-time measurement

• Universal load cell• Mouse or Rat models available

Advantages

• Highly accurate• Provides in-cage enrichment• Reduced technician interaction

Page 19: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

BODY MASSRaw Body Mass Data

• Stores bracket mass vs. time• Recorded to disc at 1Hz• Is used about every 15 minutes

Zoomed In

• Track body mass over time

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BODY MASSProcessed Body Mass Data

• Stores most recent body mass for each timestamp• Synchronized with other data

• Diurnal cycle clearly visible

Page 21: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

VOLUNTARY EXERCISE

Wheel-M or Wheel-R

Features

• Real-time measurement• Stainless steel construction• Entirely in cage

• Mouse or Rat Wheel• Magnetic Reed Switch• Optional: Wheel Stop

Advantages

• Increased granularity gives insight into behavioral patterns• Correlates with metabolic data

Page 22: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

VOLUNTARY EXERCISERaw Running Wheel Data

• Stores RPS vs. time• Recorded to disc at 1Hz

Processed Running Wheel Data

• Shows cumulative distance run• Can be binned and synchronized with metabolic data

Page 23: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

TOTAL ACTIVITY

BXYZ-M or BXYZ-R

• XY and Z IR arrays• Mounting bracket

Features

• 0.25cm calculated centroid• Real-time measurement• Intelligent obstruction detection• Rearing captured with Z axis

Advantages

• Highly accurate• Not affected by static obstructions• Correlated with metabolic data

Page 24: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

TOTAL ACTIVITYActivity Analysis

• Total Activity• Total Distance Traveled• Rearing• Activity associated with in-cage devices• In cage position vs. time• Customizable assays• Position histograms

Activity Comparison

• WT vs. ob/ob• Interaction with FH-MB• Time spent time spent near food hopper

Page 25: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

CALORIMETRY

Flow Generators & Gas Analyzers

• Automated calibration • Sequential or continuous monitoring• Can group for 4, 8,16, 24, 32 etc. cages• Expandable and modular• Water vapor dilution correction• Integrated O2, CO2, WVP analyzers

• Pull-mode (negative pressure)

Page 26: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSIS Data Synchronization

• Overlay metabolic data with other continuously monitored parameters

Further Analysis

• All data are perfectly synchronized and can be exported to other programs if required (open formats)

Page 27: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSIS Further Data Synchronization

•Body mass and food intake

Advantages

• Synchronized data yields traceability• Real time measurement improves visibility• Both enable behavioral monitoring

•Body mass and water intake

•Body mass, food intake, water intake, and wheel revolutions

Page 28: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSIS Multiplexed vs. Continuous

• Continuous measurements give unprecedented detail• Multiplexed measurements are adequate for many research topics• You have the choice

Page 29: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

TOTAL ACTIVITYActivity Analysis (II)

• Activity within user-defined areas of any shape• Regions of interest interactively defined on customizable background• Correlate with other data streams as needed

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TOTAL ACTIVITYActivity Analysis (III)

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TOTAL ACTIVITYActivity Analysis (IV)

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DATA ANALYSIS

Page 33: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSIS

Page 34: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSIS

Page 35: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

Multiplexing errors- more information

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Error from multiplexing

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Over and underestimates

Page 38: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

DATA ANALYSISRaw Data Synchronization - Zoomed

• Body mass (blk), food intake (red), wheel (yel), and water intake (blu)

Page 39: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ETHOSCANBehavioral Monitoring

• All cage devices continuously monitored (“focal animal”)• Interactions sequentially processed in data analysis• Output is timestamp, position, duration, amount and activity

Page 40: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ETHOSCAN

Behavioral Transition Matrix

• Statistical analysis of interaction with in-cage devices• Shows probability of behaviors in the top row happening immediately after the behavior in the leftmost column

Page 41: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ETHOSCANTime Budgets

• Shows percentage of time spent exhibiting a specific behavior• Customizable to your cage setup and behaviors you wish to monitor

Ambulatory Budgets

• Two wild type mice –with and without access to a wheel• Note the significant difference in distance travelled

Page 42: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY

Page 43: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY• Time-consuming to set up and test• Just one span per run… But analyzers drift• Propane burn validations may require back-calculation of

span gases (black box!)• Cannot adequately account for water vapor dilution,

especially at low WVP• System integration difficult• Many individual instruments = many failure points and

many companies to deal with• Little or no expandability or modularity

Page 44: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY

Page 45: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY• Raw data not preserved, so - Not auditable• Comparisons between systems problematic• Little emphasis on traceability (pre-Jon Moon)• But – traceability alone will not help• Also need transparency!• Custom “black box” software is proprietary• Software is a priori optimized for

distinguishing between two activities

Page 46: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY• Highly stable O2, CO2 analyzers required

• Low noise (for response correction)• WV dilution is a problem…• Chemicals are impractical…• Typically, chilled condensers are used• But these only “dry” the air to ~650 Pa WVP• At dewpoints < 1 C, they have no effect at all• Plus, FiCO2 changes…

Page 47: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY

FiCO2 changes…

Page 48: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY +

• Minimize O2 drift (SSI O2 analyzers)

• Then, eliminate O2 drift by repeated, interleaved FiO2 measurement (PP)

• For CO2, use interleaved SSI analyzers (PP)

• For eliminating WV dilution, don’t scrub/condense – calculate from WVP, BP! (PP)

• Record all raw data in complete detail

Page 49: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

ROOM CALORIMETRY +• Use computational processing to reassemble

the dry O2 and CO2 data from the interleaved O2, CO2, WVP data, plus BP (PP)

• Apply rigorously neutral smoothing and response correction to data

• All using a traceable, auditable, shareable script

• Because raw data are stored, any kind of response correction you wish can be applied!

Page 50: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION

Page 51: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION

• Analyzers integrated (< time-lags)• All analyzers temperature-controlled• Calibration automated • Analog signal transfer eliminated• System is indefinitely expandable to future

sensors, e.g. bicycle W, treadmill speed/elevation, IR activity, accelerometry, body weight, heart rate, body mass, food intake, etc. etc.

Page 52: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION (room)

• No complex pressure etc. regulators required• Normocapnic, not steno/hypercapnic• High resolution analyzers plus background

baselining = higher flow rate (> 80 L/min)• Leak problems minimized• Single manufacturer = easy, single-point

support + FUD-less, quick setup!• Use for rooms, hoods or masks

Page 53: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION (room)

Page 54: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION• Push-button easy!• Raw data stored at 1 Hz• Any analytical protocol

can be applied• Drill down from processed

data to raw data• Users can share analytical

scripts

Page 55: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION• Additional sensors are in

development• All sensors are sampled at

1 Hz in perfect synchrony with gas exchange data

• Opens the door to many new questions

• Need a feature? Ask!

Page 56: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

PROMETHION

New Horizons

• Data Rate Changes from a trickle to a fire hose• Use as much as you need• Fully modular – add features as you need them• Automates analysis without losing flexibility and traceability• Sable Systems is committed to your success!

METABOLIC SCREENING

Page 57: SABLE’S SCOPE Who We Are Founded by John R.B. Lighton, Ph.D. 25 years of scientific discovery Tools for understanding – with a respirometry focus Scientists.

Questions?

THANK YOU!