Review for Lab Practical #1 MLAB 352 Dr. Mohamed A. El-Sakhawy.
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Transcript of Review for Lab Practical #1 MLAB 352 Dr. Mohamed A. El-Sakhawy.
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Review for Lab Practical #1
MLAB 352Dr. Mohamed A. El-Sakhawy
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Lecture Outline• Exam format• Biosafety• Staining• Four-way plate streak• Plate counts• Media types• Temperature classification• Oxygen classification• Control with chemicals and antibiotics
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Format of the Lab Practical
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Biosafety
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General Biosafety Rules• NO food or drink in lab.• NO cosmetics in lab.• NO open-toed shoes in lab.• Lab doors will remain closed at all times.• NO mouth pipetting.• Use care when handling potentially hazardous materials.• Wear appropriate personal protective equipment at all
times.• Dispose of all microbiological materials in designated
orange biohazard bags.• Dispose of all sharps and glass in designated sharps
containers.• Notify the instructor immediately when there is an accident
or spill.• Notify the instructor of pertinent medical conditions.
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When You Begin Work for the Day…• Wash your hands.
• Disinfect the surface of your lab table.
• Put on your goggles.
• Put on your lab apron.
• Put on gloves.
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When You Are Finished for the Day…
• Appropriately dispose of all waste.• Disinfect the surface of your lab table.• Remove gloves inside-out and dispose in
biohazard waste.• Remove apron, fold inside-out, and store in
your drawer.• Remove goggles and store in your drawer.• Wash your hands before leaving the lab.
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Staining
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Types of Bacterial Stains
• Simple stain – Stains cells but not background– Heat-fixed (killed) bacteria
• Negative stain – Stains background but not cells– Live bacteria
• Differential stain – Stains only certain types of cells based upon properties
• Basic stain – Positive charge– Attracted to negatively-charged cell wall
• Acidic stain – Negative charge– Repelled by negatively-charged cell wall
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Reagents of a Differential Stain• Primary stain
– First dye used in the staining process– Will initially stain all cells and then be removed from a
subset• Mordant
– Improves the ability of the primary stain to bind cells• Decolorizer
– Removes the primary stain from a subset of cells• Counterstain
– Second dye that stains decolorized cells
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A Smear is Prepared by Spreading Bacteria on a Glass Slide
Figure 4.15
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Heat-Fixing a Bacterial Smear
http://iws2.collin.edu/dcain/CCCCD%20Micro/Heat_fix.htm
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Gram Stain
http://iws2.collin.edu/dcain/CCCCD%20Micro/gram_stain.htm
(primary stain)
(mordant)
(decolorizer)
(counterstain)
http://student.ccbcmd.edu/courses/bio141/lecguide/unit1/prostruct/grmix.html
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Examples of Gram-Positive and Gram-Negative Organisms
GRAM-POSITIVE• Staphylococcus xylosus• Bacillus megaterium
GRAM-NEGATIVE• Escherichia coli
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Capsule Stain
• Alcaligenes faecalis• Enterobacter aerogenes• Klebsiella pneumoniae• Serratia marcescens
http://iws2.collin.edu/dcain/CCCCD%20Micro/capsule_stain.htm
(primary stain)
(decolorizer/counterstain)
NO HEAT FIXATION!
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Acid-Fast Stain
http://iws2.collin.edu/dcain/CCCCD%20Micro/acid_fast.htm
(primary stain)
(decolorizer)
(counterstain)
Figure 4.18
• Mycobacterium smegmatis
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Endospore Stain
http://iws2.collin.edu/dcain/CCCCD%20Micro/endospore.htm
(primary stain)
(decolorizer)
(counterstain)
• Bacillus megaterium
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Four-Way Plate Streak
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Four-Way Plate Streak
http://iws2.collin.edu/dcain/4way.htm
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Plate Counts
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Viable Plate Counts from Serial Dilutions
• TNTC – Too Numerous To Count – More than 300 colonies
• TFTC – Too Few To Count– Less than 30 colonies
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Calculation of CFU/ml for Urine Specimens
• Count colonies– CFU/ml = # colonies/calibrated loop volume
• Threshold: 1 x 105 CFU/ml
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Media Types
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Nutrient Agar (NA)
• Special features:– None
• Used for:– Culture of non-fastidious
organisms
http://commons.wikimedia.org/wiki/File:Agar_Plate.jpg
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Sabouraud Agar/Broth
• Selective media• Special features:
– Acidic pH (5.5)
• Used for:– Culture of fungi (yeasts
and molds)http://iws2.collin.edu/dcain/CCCCD%20Micro/sabouraudagar.htm
http://www.jlindquist.net/generalmicro/dfnewgfbpage.html
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Brain Heart Infusion (BHI) Agar
• Special features:– None
• Used for:– BHI agar deeps used to
determine oxygen classification
http://iws2.collin.edu/dcain/CCCCD%20Micro/bhitubes.htm
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Sodium Thioglycollate Broth
• Special features:– Sodium thioglycollate –
Reduces O2 to H2O
– Resazurin (dye) – Pink when oxidized (O2 present), colorless when reduced (no O2)
• Used for:– Culture of anaerobic
organisms
http://iws2.collin.edu/dcain/CCCCD%20Micro/thioglycollatebroth.htm
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Mannitol Salt Agar (MSA)
• Selective• Differential• Special features:
– 7.5% NaCl– Mannitol (fermentation
substrate)– Phenol red (pH indicator)
• Used for:– Growth of halotolerant
species (esp. Staphylococcus spp.)
– Distinguishing between Staphylococcus spp.
http://iws2.collin.edu/dcain/CCCCD%20Micro/normalskinflora.htm
S. epidermis
S. aureus/S. xylosus
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Blood Agar• Differential• Enriched• Special features:
– Sheep’s blood (nutrients, hemolysis substrate)
• Used for:– Culture of fastidious organisms– Distinguishing between
bacteria by hemolysis patterns (esp. Streptococcus)
http://iws2.collin.edu/dcain/CCCCD%20Micro/hemolysis.htm
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Chocolate Agar
• Enriched• Special features:
– Boiled sheep’s blood (nutrients)
• Used for:– Growth of fastidious
organisms (esp. Neisseria spp.)
– Distinguish Neisseria spp. using oxidase test
http://iws2.collin.edu/dcain/CCCCD%20Micro/normalfloranasopharynx.htm
http://www.medschool.lsuhsc.edu/microbiology/DMIP/bsoxid.jpg
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Mueller-Hinton Tellurite (MHT) Agar
• Differential• Special features:
– Tellurite (metal)
• Used for:– Distinguishing
Corynebacterium spp. (diphtheroids) based on reduction of tellurite to tellurium (black ppt.)
http://iws2.collin.edu/dcain/CCCCD%20Micro/normalskinflora.htm
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Columbia C-NA (CCNA) Agar
• Selective• Differential• Special features:
– Colistin (antibiotic)– Nalidixic acid (antibiotic)– Sheep’s blood
(nutrients/hemolysis substrate)
• Used for:– Selective culture of Gram-
positive species– Distinguishing between
Gram-positives based on hemolysis
http://iws2.collin.edu/dcain/CCCCD%20Micro/columbiacnaagar.htm
E. faecalis E. aerogenes
E. coliS. xylosus
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MacConkey Agar
• Selective• Differential• Special features:
– Crystal violet (dye)– Bile salts– Lactose (fermentation
substrate)– Neutral red (pH indicator)
• Used for:– Selective culture of Gram-
negative organisms– Distinguishing between Gram-
negatives based on lactose fermentationhttp://iws2.collin.edu/dcain/CCCCD%20Micro/macconkeyagar.htm
E. aerogenes E. coli
S. typhimurium S. epidermis
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Eosin Methylene Blue (EMB) Agar
• Selective• Differential• Special features:
– Eosin (dye)– Methylene blue (dye)– Lactose (fermentation
substrate)
• Used for:– Selective culture of Gram-
negative species– Distinguishing between
Gram-negatives based on lactose fermentation
http://iws2.collin.edu/dcain/CCCCD%20Micro/embagar.htm
E. coli P. aeruginosa
S. xylosus E. aerogenes
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Snyder Test Agar
• Selective• Special features:
– Acidic pH (4.8)– 2% glucose (fermentation
substrate)– Bromcresol green (pH
indicator)
• Used for:– Assessing levels of
Lactobacillus spp. organisms in the mouth
– Testing susceptibility to dental caries
http://iws2.collin.edu/dcain/CCCCD%20Micro/snydertest.htm
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Temperature Classification
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All Microbes Have an Optimal Growth Temperature
Figure 6.5
Psychrotrophs
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Incubation at Multiple Temperatures Identifies Temperature Classification
Figure 6.4b
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Examples of Temperature Classifications
Classification Characteristics Examples from Lab
Psychrophile Growth Range: -5 to 20 COptimum Temperature: ~10 C
Pseudomonas fluorescens*(*Actually a psychrotroph)
Mesophile Growth Range: 20 to 45 COptimum Temperature: ~37 C
Escherichia coli, Micrococcus luteus, Serratia marcescens, Saccharomyces
cerevisiae
Thermophile Growth Range: 35 to 80 COptimum Temperature: ~55 C Bacillus stearothermophilus
Hyperthermophile Growth Range: Above 80 COptimum Temperature: variable Archea such as Pyrolobus
http://iws2.collin.edu/dcain/CCCCD%20Micro/temperatureclassification.htm
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Oxygen Classification
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BHI Agar
1. Obligate aerobe2. Microaerophile3. Facultative anaerobe4. Aerotolerant anaerobe5. Obligate anaerobe
http://iws2.collin.edu/dcain/CCCCD%20Micro/bhitubes.htm
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Sodium Thioglycollate Broth
1. Obligate anaerobe2. Obligate aerobe3. Aerotolerant anaerobe4. Facultative anaerobe
http://iws2.collin.edu/dcain/CCCCD%20Micro/thioglycollatebroth.htm
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Control with Chemicals and Antibiotics
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The Disk Diffusion Assay Measures Sensitivity
Figure 10.9
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A Susceptibility Chart is Used to Determine Effects of Antibiotics