Reference Standards DNA & FFPE...

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Reference Standards DNA & FFPE Samples

Transcript of Reference Standards DNA & FFPE...

Page 1: Reference Standards DNA & FFPE Samplesams-resources.supremeclients.com/Presentation/Reference-Standar… · Slides Intra-Block Inter-Block Hematoxylin & Eosin Stained Hematoxylin

Reference Standards

DNA & FFPE Samples

Page 2: Reference Standards DNA & FFPE Samplesams-resources.supremeclients.com/Presentation/Reference-Standar… · Slides Intra-Block Inter-Block Hematoxylin & Eosin Stained Hematoxylin

Mutation Cell Lines

CRIPSR-Cas9 for Footprint-Free Genome Editing

Homologous

Directed Repair

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Custom Cell Line Engineering

Cell Type Modification Type

Cancel Cell Lines

KO

Point Mutation

Insertion

Human iPSCs

KO

Point Mutation

Insertion

Human ES Insertion

Primate iPSCs Insertion

Human Primary CellsKO

Insertion

Human Fibroblasts Point Mutation

Mouse Fibroblasts Point Mutation

Rat Thycrocytes KO

Selected lines from >100 distinct parental cell lines engineered:

A-549 BEAS-2B BT-474 HaCaT HBE Huh7 MCF-10A OCCM-30 RPE-1

SK-MEL-31 Tert-RPE U-2 OS 786-O CHLA-10 A-375 Gist-T1 DLD-1

HCT-116 HEK293 HEK293T HeLa HepG2 4T1 C2C12 cTEC ES Cells

iPSCs MWCL-1 BCWM-1 H929 Jurkat K562 KHYG-1 LAD2 MM.1s MWCL-1 NCI-H929 T2 cells TF-1 HT1080 HT29 KBM-7 KM12-Luc LnCaP MDA-MB231 NCI-H2228

RKO TC32 SCC35 SH-SY5Y

>400 Gene Edited Cell Lines Generated

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Isogenic Cell Line – Engineering Workflow

• Clonally Homogeneous

Isogen

ic Pair

• Genetically Validated

• Homozygous Modification

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Bio-Relevant Specimens

FFPE Cell Blocks

Tumor Xenografts

Amplicons

Plasmids

Genomic DNA

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Engineering Clinically Relevant Mutations

Example 1: Point Mutation Example 2: Small Insertion Example 3: Deletion

150+ point mutations engineered across 15+ genes

KRAS EGFR BRAF NRAS HRAS PIK3CA IDH2 FGFR3 TP53 ESR1 FLT3 APC CTNNB1 PTEN BRCA1

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Focused on MAPK Pathway

Exon 19 Mutation Panel

• 22 Deletion Mutations• In-frame mutations that occur within kinase domain• Target TKI’s therapeutics• 21 of 22 mutations are unique to ASC

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114 Off-the-Shelf Mutations

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Molecular Reference Standards

Assay Development • Optimize sample processing protocols• Establish limit of detection (LOD)• Identify and validate optimal reagents• Monitor the impact of workflow changes on results

Quality Control and Assay Reproducibility • Accurately evaluate batch-to-batch variability • Easily transfer workflows across labs or institutions

CE-Seq

NGS PCR

FISH

IHC

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Reference Standards

Largest Cell Line Panel of EGFR Mutations

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Molecular Reference Standards – FFPE Blocks and Slides

Intra-Block Inter-Block

Hematoxylin & Eosin Stained

Hematoxylin Stained

Apps

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Molecular Reference Standards – FFPE Scrolls

Apps

• Simulate processing of biological specimens • Perfect for optimizing DNA extraction or

assay development

BRAF V600E TaqMan Assay

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FFPE Scrolls

Tailored to your assay development needs

EGFR T790M mutant cell lines fixed and diluted into WT parental cells at targeted allelic frequencies of 50%, 10%, and 1% T790M

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Accelerate Discovery Through Innovative Life Science