Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative...

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Quantitative Genetics Polygenic inheritance Continuous variation Additive alleles Calculating the number of genes Heritability Statistical tools: Mean, variance Broad sense heritability Narrow sense heritability Correlation: Twin Studies and concordance

Transcript of Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative...

Page 1: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Quantitative Genetics• Polygenic inheritanceContinuous variation Additive alleles Calculating the number of

genes

• HeritabilityStatistical tools: Mean,

variance Broad sense heritability Narrow sense heritability Correlation: Twin Studies

and concordance

Page 2: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Polygenic inheritance

• 2 or more genes• Show continuous

variation vsdiscontinuous

• Additive component• Distinct phenotypic

classes• Quantitative traits:

size, weight, height,IQ

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Polygenic inheritance

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Continuous variation

• Kolreuter’s cross

• Dwarf x tall tobacco

• F1 intermediate

• F2 intermediate, normal distribution

Page 5: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Multiple gene hypothesis

• East’s cross of Nicotiana with different corolla length

• Indicates Mendeliansegregation of different phenotypic classes

• Took subsets of F2and crossed.

Page 6: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Multiple factor hypothesis

• Characters quantified• Two or more genes• Additive alleles• Contribute a constant

amount• Non-additive add

nothing• All alleles add equally

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Calculation of number of genes

• (1/4)n= ratio of f2 individuals showing extreme phenotype

• n = (2n +1) phenotypic classes

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Statistical Analysis

• Mean (X) = ∑Xi/n• Variance (s2) = (∑Xi – X)2/n-1• Standard deviation (s) = √s2

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Heritabilty

• Genetic contribution to phenotypic variability

• Broad-sense Heritabilty (H2)• Narrow-sense Heritabilty (h2)• Quantitative trait loci (QTL)

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Broad-sense Heritabilty• H2 = proportion of

total variance caused by genetic variance

• H2 = 1.0, all genetic

• H2 = 0 all variation due to environment

• Vp= phenotypic var

• Vg= genetic var

• VE= enviromental var

• Vp= Vg + VE

• H2= Vg/Vp

Page 11: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Calculation of H2(Broad-Sense)• VE= (3.1 + 3.9)/2

(4.7 + 3.5)/2VE = 4.1

• Vp = 47.7

• Vg = Vp – VE= 47.7-4.1

• H2= Vg/Vp

Mean Var

P1 short

40.4 3.1

P2 tall 93.7 3.9

F1 63.9 4.7

F2 68.7 47.7

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Estimation # of genes

• n = D2 / 8Vg• n = number of genes• D = difference of means of two parents• Vg = genetic variance• Assumes: alleles equal and additive,

assort independently, original parents are homozygous

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Narrow-sense Heritabilty

• Potential response to selection

• Additive variance• Dominance variance

• VG= VA + VD

• h2 = VA/ VE + VA + VD

• High h2 prediction of impact of selection in altering a population.

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Selection• h2 = M2- M/ M1 – M

response/selection differential

• M= mean of parental• M1= mean of selected

segment• M2= mean of offspring• Heritability low for traits

essential for survival

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Narrow-sense Heritabilty

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Twin Studies

H = (Vdz – Vmz)/ Vdz

Page 17: Quantitative Genetics - Western Oregon Universitywou.edu › ~guralnl › 311Quantitative Genetics.pdf · Quantitative Genetics • Polygenic inheritance Continuous variation Additive

Quantitative trait loci (QTL)

• DDT resistance polygenic

• Each chromosome makes a contribution to survival.