Quantifying Protein Mobility in Living Drosophila Embryos...
Transcript of Quantifying Protein Mobility in Living Drosophila Embryos...
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Quantifying Protein Mobility in Living Drosophila Embryos Using
Fluorescence Recovery After Photobleaching
(FRAP)
William DempseyShima
Hajimirza
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Overview
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Days 1 and 2•
Drosophila Introduction
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Protocol•
Results
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Conclusions•
Future Propositions
•
References•
Acknowledgements
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Fluorescence Microscopy
Calibration E. Coli
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Gel Electrophoresis
LadderLadder Kpn1/HindIII Kpn1 Lambda EcoR1
Vector Control HindIII Lambda Control
10 Kilobases
5 Kilobases
3 Kilobases
1.5 Kilobases
1 Kilobases
2 Kilobases
0.5 Kilobases
Appx. 42ng
42ng
Ladder Info from: http://www.neb.com/nebecomm/products/productN3232.asp
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FRAP Overview
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Excite Green Fluorescent Protein (GFP) fluorophore
with low energy 488nm Argon
laser–
Detect emission of a lower wavelength signal
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Maximum laser power is used to photobleach
GFP for analysis
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Returning to low energy emission allows quantification of the remaining unbleached GFP-coupled proteins
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Drosophila Embryos
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FRAP assay performed on two transgenic types:–
Wild-type embryos ubiquitously expressing histone
(H2A-GFP)
–
Wild-type embryos ubiquitously expressing nuclear localization signal (NLS-GFP)
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Nuclear Labeling of NLS-GFP
100 µm
Supatto, W et al. PNAS 2005
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Protocol
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Embryo Preparation–
De-chorionated
and placed on microscope
slide after 14 developmental cycles (2.5 hours)
–
After isolation, the nuclei remain as a single epithelial layer at the edge of the yolk for approximately 30-40 minutes
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Gastrulation
occurs after this stationary period
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Protocol
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Imaging–
63x, 0.9 NA water Acroplane
Confocal
Microscope
objective–
Seven 1.5 micron z-sections are taken between a nuclear layer to allow full planar photobleaching
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Bleaching and Time Lapse–
Define a region of interest and bleach the middle section with 100% laser power
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Take 7 z-sections every 10 seconds to quantify fluorescence recovery
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H2A Experiment 1
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H2A Experiment 1
Calculated Deff
was between 0.0094 and 0.0139 μm2/sec
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H2A Experiment 2
Calculated Deff
was between 0.0079 and 0.0117 μm2/sec
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NLS Experiment
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NLS Experiment
Slope was calculated to be approximately 0.0012 sec-1
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Control 1: Linearity
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Control 2: Time Bleach
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No significant photobleaching
at 2% laser power for 690 seconds
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Control 3: Single Nucleus Bleach
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Control 3: Single Nucleus Bleach
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Signal is restored above background levels after one entire nucleus is photobleached
Calculated Deff
was between 0.0056 and 0.0083 μm2/sec
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Control 4: Five Nucleus Bleach
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Control 4: Five Nucleus Bleach
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Central nucleus no longer regains signal in a diffusion-like manner
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Conclusions
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Motion of H2A within Drosophila embryo nuclei can be modeled by simple diffusion–
Deff
was calculated to be between 0.0079 and 0.0139 μm2/sec
–
Deff
of free GFP is approximately 87 μm2/sec–
Kicheva
et al (2007) reported Dpp-GFP to
have a Deff
of approximately 0.10 μm2/sec during Drosophila wing development
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Conclusions
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NLS diffusion is too rapid for manual FRAP experiments–
NLS fluorescence returns to a stable level in less than 1 second
–
Relative size (kDa) between GFP and NLS may contribute (GFP is 27kDa)
–
Better time resolution may be needed to observe an exponential recovery
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Conclusions
•
Single cell control indicates that H2A can migrate between nuclei–
Cell membranes are not fully formed between
nuclei–
Multiple cell control verifies that production is
unlikely–
Since H2A is expected to constantly bind
DNA, why is it diffusing between nuclei in the embryo?
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Future Propositions
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H2A experiments must be redone–
Include diffusion between nuclei
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Perform a complete embryo bleach to be sure of no generation
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Perform for longer time intervals (20 minutes instead of around 10)
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NLS experiment must be performed with higher time resolution
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Future Propositions
•
Nuclear bleach experiments must be performed to better quantify diffusion between nuclei–
Bleach 1, then 2, then 3, etc. to see whether the Deff
is approximately the same–
Perform full nuclei bleaches at different stages of development
•
Nuclei change size during different stages of development (larger at early stages)
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References•
“1kb DNA Ladder,”
from New England Biolabs
webpage, Last accessed on
Sept 22, 2007; URL: http://www.neb.com/nebecomm/products/productN3232.asp
•
Axelrod, D et al. “Mobility measurement by analysis of fluorescence photobleaching
recovery kinetics,”
Biophys J, Vol. 16, 1055-1069, 1976.
•
Davis, I; Girdham, CH; and O’Farrell, PH. “A Nuclear GFP That Marks Nuclei in Living Drosophila Embryos; Maternal Supply Overcomes a Delay in the Appearance of Zygotic Fluorescence,”
Developmental Biology, Vol.
170, 726-729, 1995.•
Kicheva, A et al. “Kinetics of morphogen
gradient formation,”
Science, Vol.
315, No. 5811, 521-525, 2007.•
Kim, I et al. “Cell-to-cell movement of GFP during embryogenesis and early seedling development in Arabidopsis,”
PNAS, Vol. 102, No. 6, 2227-2231,
2005.•
Supatto, W et al. “In vivo modulation of morphogenetic movements in Drosophila embryos with femtosecond
laser pulses,”
PNAS, Vol
102, No. 4,
1047-1052, 2005.
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Acknowledgements
•
Willy Supatto, Ph.D. –
Scott Fraser Lab•
Periklis
Pantazis, Ph.D. –
Scott Fraser Lab
•
Rob Phillips, Ph.D. –
Caltech Professor•
Scott Fraser, Ph.D. –
Caltech Professor
•
Special thanks to all of the TAs who helped us this week