pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013
-
Upload
millerjeremya -
Category
Data & Analytics
-
view
40 -
download
0
description
Transcript of pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013
![Page 1: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/1.jpg)
Jeremy MillerNaturalis Biodiversity Center
Leiden, Netherlands, andPlazi, Switzerland
Pro-iBiosphereTowards Open Biodiversity Knowledge
with Soraya Sierra, Donat Agosti, Lyubomir Penev, and the Pro-iBiosphere team
http://www.pro-ibiosphere.eu/http://wiki.pro-ibiosphere.eu/wiki/Main_Page
![Page 2: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/2.jpg)
Goals
• Address technical and semantic interoperability challenges– How to make taxonomic data, information and knowledge more
widely accessible and re-usable?– How to link taxonomic literature to external datasets?
• Gain a better understanding of how to sustain important workflows and services
![Page 3: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/3.jpg)
Multi-Taxon Specimen Data for Setting Conservation Priorities
Source: Kremen C, Cameron A, Moilanen A, Phillips SJ, Thomas CD, Beentje H, Dransfield J, Fisher BL, Glaw F, Good TC, Harper GJ, Hijmans RJ, Lees DC, Louis E, Nussbaum RA, Raxworthy CJ, Razafimpahanana A, Schatz GE, Vences M, Vieites DR, Wright PC, Zjhra ML. 2008. Aligning conservation Priorities across taxa in Madagascar with high-resolution planning tools. Science 320: 222-226.
Conservation priority areas for six single-taxon solutions
Consensus conservation priority areas and actual and proposed protected areas
Antweb Monographs Field guide
Monograph MonographsField guide
Monographs
2003: Madagascar announces it will triple protected land to 10% coverage
![Page 4: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/4.jpg)
Animals
Records: 230,000,000Species: 165,000Density: 1,400
![Page 5: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/5.jpg)
Plants
Records: 80,000,000Species: 187,000Density: 427
![Page 6: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/6.jpg)
Birds
Records: 183,000,000Species: 1,000Density: 18,000
![Page 7: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/7.jpg)
Hymenoptera
Records: 4,000,000Species: 38,000Density: 112
![Page 8: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/8.jpg)
Spiders
Records: 450,000Species: 15,500Density: 29
![Page 9: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/9.jpg)
GBIF DataGBIF Records Species in GBIF
Plants
Birds
Hymenoptera
Spiders
Other
Plants
BirdsHymenoptera
Spiders
animalsOtheranimals
% D
escr
ibed
spe
cies
in G
BIF
R/Sp: 427
R/Sp: 18,000
R/Sp: 112
R/Sp: 29
![Page 10: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/10.jpg)
Number of Collection Records in Physical Versus Digital Form, by Collection
![Page 11: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/11.jpg)
Number of Collection Records in Physical Versus Digital Form, by Collection
![Page 12: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/12.jpg)
Number of Collection Records in Physical Versus Digital Form, by Collection
![Page 13: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/13.jpg)
the structure of taxonomic data…
![Page 14: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/14.jpg)
Taxonomic article
References
Descriptions
Nomenclature
Images
Records
Na
me
Na
me
Na
me
Na
me
DNA
![Page 15: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/15.jpg)
Taxonomic article
References
Descriptions
Nomenclature
Images
Records
Na
me
Na
me
Na
me
Na
me
01001010010011011
0100111010001000100100110111001000DNA
DNA
01001010010011011
0100111010001000100100110111001000Records
01001010010011011
0100111010001000100100110111001000Images
01001010010011011
0100111010001000100100110111001000References
01001010010011011
0100111010001000100100110111001000Nomenclature
01001010010011011
0100111010001000100100110111001000Descriptions
GU
ID
GUID
GUID
GU
ID
GU
ID
GU
ID
![Page 16: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/16.jpg)
Taxonomic article
References
Descriptions
Names
Images
Records
01001010010011011
0100111010001000100100110111001000DNA
DNA
01001010010011011
0100111010001000100100110111001000Records
01001010010011011
0100111010001000100100110111001000Images
01001010010011011
0100111010001000100100110111001000References
01001010010011011
0100111010001000100100110111001000Nomenclature
01001010010011011
0100111010001000100100110111001000Descriptions
GU
ID
GUID
GUID
GU
ID
GU
ID
GU
ID
![Page 17: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/17.jpg)
Taxonomic article
References
Descriptions
Names
Images
Records
01001010010011011
0100111010001000100100110111001000DNA
DNA
01001010010011011
0100111010001000100100110111001000Records
01001010010011011
0100111010001000100100110111001000Images
01001010010011011
0100111010001000100100110111001000References
01001010010011011
0100111010001000100100110111001000Nomenclature
01001010010011011
0100111010001000100100110111001000Descriptions
GU
ID
GUID
GUID
GU
ID
GU
ID
GU
ID
GBIF
ZooBank
Global Names
Morphbank
speciesID
EOL
Genbank
Taxonomists
Ecologists
Conservation
Policy
Public
![Page 18: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/18.jpg)
the prospective approach…
![Page 19: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/19.jpg)
![Page 20: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/20.jpg)
![Page 21: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/21.jpg)
![Page 22: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/22.jpg)
Publication PDF
![Page 23: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/23.jpg)
Publication PDF
XML: TaxPub
![Page 24: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/24.jpg)
Publication PDF
XML: TaxPub
![Page 25: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/25.jpg)
Publication PDF
XML: TaxPub
![Page 26: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/26.jpg)
Publication PDF
XML: TaxPub
![Page 27: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/27.jpg)
XML: TaxPub
Encyclopedia of Life
![Page 28: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/28.jpg)
![Page 29: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/29.jpg)
![Page 30: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/30.jpg)
![Page 31: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/31.jpg)
![Page 32: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/32.jpg)
Pensoft: Biodiversity Data Journal
![Page 33: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/33.jpg)
Pensoft: Biodiversity Data Journal
![Page 34: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/34.jpg)
Pensoft: Biodiversity Data Journal
![Page 35: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/35.jpg)
Pensoft: Biodiversity Data Journal
![Page 36: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/36.jpg)
Pensoft: Biodiversity Data Journal
![Page 37: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/37.jpg)
the retrospective approach…
![Page 38: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/38.jpg)
200,000 Taxonomic Articles in Zoological RecordSince 1864
![Page 39: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/39.jpg)
200,000 Taxonomic Articles in Zoological RecordSince 1864
![Page 40: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/40.jpg)
Elements of a Taxonomic Treatment
![Page 41: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/41.jpg)
Elements of a Taxonomic Treatment Nomenclature
![Page 42: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/42.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
![Page 43: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/43.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
![Page 44: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/44.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
Distribution
![Page 45: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/45.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
Distribution
Diagnosis
![Page 46: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/46.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
Distribution
Diagnosis
Description
![Page 47: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/47.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
Distribution
Diagnosis
Description
Natural history
![Page 48: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/48.jpg)
Elements of a Taxonomic Treatment Nomenclature
DNA sequences
Materials citations
Distribution
Diagnosis
Description
Figures
Natural history
![Page 49: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/49.jpg)
![Page 50: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/50.jpg)
![Page 51: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/51.jpg)
![Page 52: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/52.jpg)
Distributing Elements to Biodiversity Databases
![Page 53: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/53.jpg)
![Page 54: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/54.jpg)
![Page 55: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/55.jpg)
![Page 56: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/56.jpg)
![Page 57: pro-iBiosphere Towards Open Biodiversity Knowledge COOPEUS 2013](https://reader037.fdocuments.net/reader037/viewer/2022110119/55630f09d8b42a5b498b48d6/html5/thumbnails/57.jpg)
Thank you for your attention
Acknowledgments
Naturalis Biodiversity CenterSoraya SierraJan van TolEva Kralt
PlaziDonat AgostiGuido SauterTerry CatapanoWilli Egloff
Pensoft PublishingLyubomir PennevTeodor GeorgievPavel StoevJordan Biserkov
National Botanic Garden of BelgiumQuentin GroomRoyal Botanic Gardens, KewDon KirkupAllan PattonBotanischer Garten und Botanisches Museum BerlinWalter BerendsohnAnton GüntschMuseum für Naturkunde Leibniz Gregor HagedornSigma OrionisCamille Torrenti
COOPEUS-WP6Jesus Marco de Lucas
California Academy of SciencesStan Blum