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http://genome.ucsc.edu/

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Ver las estadsticas bsicas calculadas sobre un

conjunto de datos

Visualizar el esquema de la tabla y la lista de todas las

otras tablas de la base de datos

Organizar los datos de salida en varios formatosdiferentes para su uso en otras aplicaciones, hojas de

clculo o bases de datos

Establecer restricciones sobre los valores de campoincluidos en la salida

Datos compartidos con protein DBs, visiGen, hgFixed

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Tabla primaria:

posiciones nombres, etc.

(MySQL)

visualization Busqueda y descarga

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Credits

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License

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Karolchik, et al.

The UCSC Table Browser data

retrieval tool. Nucl. Acids Res.32(Suppl 1), D493-D496 (2004)

http://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=refhttp://nar.oupjournals.org/cgi/content/abstract/32/suppl_1/D493?ijkey=06tIQcBr2VZNz&keytype=ref

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Copyright OpenHelix. No use or

reproduction without expresswritten consent 11

Choose Genome

In the Human genome,

search for simple repeats

in the entire genome

with the exact sequence CAG

and get table data.

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Copyright OpenHelix. No use or

reproduction without expresswritten consent 12

Choose Data Table Custom Tracks

In the Human genome,

search for simple repeats

in the entire genome

with the exact sequence CAG

and get table data.

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reproduction without expresswritten consent 13

Describe table

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In the Human genome,

search for simple repeats

in the entire genome

with the exact sequence CAG

and get table data.Copyright OpenHelix. No use or

reproduction without expresswritten consent 14

Choose Region to Search Define region

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reproduction without expresswritten consent 15

Paste Upload

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reproduction without expresswritten consent 16

Data Summary

Nearly 1 million simple

Repeats annotated in the

Human genome

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In the Human genome,

search for simple repeats

in the entire genome

with the exact sequence CAG

and get table data.Copyright OpenHelix. No use or

reproduction without expresswritten consent 17

Create Filter

Submit Filter

Delete wildcard *

and type inCAG (uppercase)

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reproduction without expresswritten consent 18

Output dataIn the Human genome,

search for simple repeats

in the entire genome

with the exact sequence CAG

and get table data.

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reproduction without expresswritten consent 19

Output formats

Text Fields

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Copyright OpenHelix. No use or

reproduction without expresswritten consent 20

Sequence

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reproduction without expresswritten consent 21

Database

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Copyright OpenHelix. No use or

reproduction without expresswritten consent 22

Custom Track

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Hyperlinks

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Adding name creates file on desktop,

leaving blank creates output in browser.

(exception: custom track)

Data Summary

80 simple repeats in

the genomematch our filter

criteria, out of 1 million

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Copyright OpenHelix. No use or

reproduction without expresswritten consent 25

Fields