Precision Medicine and Biomarkers Nils Brünner...TUMOUR MARKERS - A GENERAL VIEW ”A molecule, a...
Transcript of Precision Medicine and Biomarkers Nils Brünner...TUMOUR MARKERS - A GENERAL VIEW ”A molecule, a...
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Section for Molecular Disease Biology
Dias 1
Perspectives in Precision Medicine, 28 February 2018 - 1 March 2018, Maersk Tower, Faculty of Health and Medical Sciences, University of Copenhagen, Denmark
Precision Medicine and Biomarkers
Nils Brünner
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Potential conflict of interest:
WntResearch ABOncology Venture A/S2cureX A/SScandion Oncology A/S
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Personalized/precision cancer medicine
The right treatment, at the right time, at the right dose
and to the right patient
The goal is to provide better healthcare to cancer patients
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TUMOUR MARKERS -A GENERAL VIEW”A molecule, a substance, or a process, which is altered quantitatively or qualitatively in pre-malignant or malignant conditions, the alteration being measurable by an assay”
Hayes et al., J. Natl. Cancer Inst., 1996
Risk stratificationDetection and/or diagnosisPrognostic informationMonitoringPrediction of response to treatment
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Risk stratification
Pre-malignant diseases to select patientsfor personalized preventive cancer medicine ex “high risk” adenomas.
Malignant diseases to select patients foradjuvant treatment (prognostic stratification)
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Prognosis Prediction
Prognostic biomarker: Indicates the likelycourse of the disease in an untreatedindividual. The blue and red patients are those who will relapse.
Predictive biomarker: Identifies subpopulationsof patients who are most likely to respondto a given therapy.
Treatment B
Treatment A
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Dukes’ A+B Colon Cancer only
Time (months)
p = 0.003HR = 2.1 (1.3-3.5 )
0.0
0.2
0.4
0.6
0.8
1.0
0 12 24 36 48 60 72 84 96 108
Low TIMP-1
High TIMP-1
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p < 0.0001
Ove
rall
surv
ival
0.0
0.2
0.4
0.6
0.8
1.0
Time (months)0 24 48 72 96
Post-op TIMP-1 (minimal residual disease?)
low TIMP-1, stage 1+2
high TIMP-1, stage 1 and 2
low TIMP-1, stage 3
high TIMP-1, stage 3
Holten-Andersen et al., 2006
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Monitoring of disease
Circulating cell free tumor DNA
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Circulating tumor DNA (ctDNA)
Key application areas
• Stratification• Companion Dx
• Response and efficacy
• Biomarkers for sensitivity /
Wan et al, Nature Reviews Cancer 2017
s a g a d i a g n o s t i c s . c o m
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Prediction of response to treatment
Prediction of ex vivo sensitivity/resistance to therapy
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IndiTreat®
Day 0 Day 4 Day 7 Day 11
No
trea
tmen
t
Cont
rol
Cancer therapy optimized for each patient
Tum
or is
sens
itive
Drug addition
Trea
tmen
t A
IndiTreat™ - measures tumor growth and treatment efficacy
2cureX A/S, Copenhagen
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Prediction of response to treatment
Prediction of adjuvant FOLFIRI treatment in CRC
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Biomarkers for drug resistance
The PETAAC-3 study
Patients with stage III colon cancer were randomized to receive adjuvant 5FU + leucovorin +/- irinotecan.
The addition of irinotecan did not significantly improve recurrence free survival or overall survival.
19/03/201814
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Kaplan-Meier plots according to random allocation group for (A) disease-free survival, (B) relapse-free survival, and (C) overall survival for patients with stage III disease treated with
the leucovorin/fluorouracil (LV5FU2) regimen with or without irinotecan
Eric Van Cutsem et al. JCO 2009;27:3117-3125
©2009 by American Society of Clinical Oncology
Similar results wereobtained in the CALGB 89803 study
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Based on results from the DEN50-R research platform (isogenic pairs of drug sensitive and drug resistant cancer cell lines) we raised the hypothesis that high ABCG2 and low TOP-1 expression will define patients with irinotecan resistant cancers
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Biomarkers for drug resistance
The PETACC-3 study
Using ABCG2 and TOP1 mRNA expression in the tumors from PETACC-3 to dichotomize the patients, a significant effect on recurrence free survival and overall survival was seen in FOLFIRI treated patients
No differences were seen in 5FU + leucovorin only treated patients
The next slide will show the Kaplan Meier survival curves (RFS) for patients with low ABCG2 and high TOP1 (sensitive patients)
compared to patients with high ABCG2 and low TOP1 (resistant patients)
19/03/201817
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HR:0.63 (0.44-0.92); p=0.017 HR:0.88(0.61-1.32); p=0.58
These data transformed into a 15,3% (57 versus 65.7) relative gain in 5 year RFS between the two FOLFIRI treated groups and an 8.1% (60.8 versus 65.7) relative gain in 5 year RFS between FOLFIRI “sensitive” patients and the group of patients receiving 5FU/LV alone.
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Next steps
1. Validate the data in an independent cohort
2. Transform the assay to a more easy method
3. Perform a prospective randomized trial:
ABCG2 low and TOP-1 highFOLFIRI
FOLFOX
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Section for Molecular Disease Biology
Dias 20
Drug resistance is a major clinical problem in Oncology
What is drug resistance and how dowe define it in the clinic ?
Can targeting drug resistance be turned intoPrecision medicine ?
Primary resistanceAcquired resistanceCross resistance
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Section for Molecular Disease Biology
Dias 21
Do we have any means to targetdrug resistance today ?
New drugs ?Biomarkers ?Trial design ?
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Section for Molecular Disease Biology
Dias 22
Working hypotheses:
With established isogenic pairs of drug sensitive and drug resistant cancer cell lines it will be possible by ”omics” analyses to identify molecular mechanisms involved in drug resistance and thereby disclose newpotential targets for anti-cancer therapy.
These cell lines will also serve as screening platformfor drugs that bypass or inhibit drug resistancemechanisms.
Genes or their products being involved in drug resistance might also serve as predictive biomarkersallowing a precision medicine approach.
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Parental cell lines (drug sensitive)
Step-wise increase in drug concentrations
Drug RESISTANT
pool
One initial high drug concentration
Cycles of drug exposure
Drug RESISTANT
clones
Drug RESISTANT
pool
Establishing drug resistant cancer cell lines
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Breastcancer
Colorectalcancer
Prostatecancer
Lung cancer
PancreaticCancer
DEN50-R research and drug screening platform
Ten pairs of isogenic wild-type (sensitive) and drug resistant
sublines from each of these five cancer forms
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Drug screenings
Omics
Algorithms
Mechanismsof action
RNAi screens
Biomarker research
DEN50-R research and drug screening platform
Clinical trials
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Section for Molecular Disease Biology
Dias 26
Example of a novel drug that interferes with drug resistance
This drug was identified using the DEN50-R screening platform
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Anti-tumor effect
27
SCO-101 in combination with chemotherapy in mice SCO-101 reduces tumor volume to
83% of vehicle Paclitaxel reduces tumor volume to
66% of vehicle Combination of paclitaxel and
SCO-101 reduces tumor volume to 37% of vehicle
This clearly demonstrates a combinatorial anti-tumor effect of paclitaxel and SCO-101 in vivo.
CONFIDENTIAL, August 2017
In vivo by combining SCO-101 and Paclitaxel in treatment of colorectal cancer
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Significant results in colorectal cancer
65%IMPROVED EFFECTThe viability of irinotecan/SN38 resistant colon cancer cells is reduced by 65% by combining SCO-101 and SN38 in comparison to SN38 alone
28
CONFIDENTIAL, August 2017
Screening platform (In vitro): SCO-101 restores chemotherapy sensitivity in resistant cells
*
Mechanisms of action studies haverevealed that SCO-101 interfereswith ABCG2 and with specific kinases
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Conclusions
1. It is possible to develop and validate biomarkers that can be used to introduceprecision medicine in cancer patients
2. Using our DEN50-R screening platformwe can identify novel drugs that interfere with common drug resistance mechanisms
Thank you for your attention