Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A...

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Transcript of Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A...

Page 1: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.
Page 2: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.
Page 3: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Poliovirus Genome Organization

Genomic RNA

VPg IRES 3'-UT

743 7370 7440

AAA

PolyproteinP1 P2 P3

1B1A

3AB 3C 3D2C2B2A1D1AB 1C

VP4 VP2 VP3 VP1

Capsid Proteins Replication Proteins

Polymerase

Protease

Page 4: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.
Page 5: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Virus entry: The final stages of the morphogenic pathwayor "How does a simple nonenveloped virus enter a cell"

160SNative

135SPVR altered

80SEmpty

Infection160S Particle

+ PVRRNA release in cytoplasm

Attachment (Docking)

?

Page 6: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Inf+ PVR–

“EnvironmentallyStable”

“EnvironmentallyUnstable”

135S Particle

Entry Active

Particle

160S Particle

+ PVR

Heat

Ea=~120-140 kcals

“Energy”~100 kcals

(Soluble PVR)

“Docking”

HighAffinityBinding

(Kinetically Trapped)

Page 7: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

160S 135S

Structural Differences

Fricks et al 1990 JVBubeck et al 2005 JV

Page 8: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

RNA Release

VP4 Mutants

4028T.G

4028T.V

4028T.S

15-20 min

80SParticle

“Environmentally

Stable”

“Environmentally

Unstable”

Membrane insertion

135S Particle

160S

Particle

Entry

Active

Particle

“Docking”

“Energy”

+ PVR X?

Page 9: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Mutant VP4 localize to membranes

Western

VP4

min pi 0 30T.GWT

0 30

VP3VP2VP1

0 30WT

0 30T.S

300T.V

VP3VP2VP1

VP4

Page 10: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Poliovirus 160S particles form ion channels in lipid bilayers

Current Distribution @ 40mV

Current (pA)

Voltage Dependence

Voltage (mV)

Channel Parameters1. Conductances2. Mean open time and

probability3. Voltage dependence

(gating, +vs–)4. Current ion

Page 11: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

VP4 entry mutants form ion channels with different properties

T.G

WT

T.S

T.V

--

0.2

0.02

ND

Cond.(pS)

--

47

28±10

15

Mempoten.

--

+

+/-

+/-

--

15-18 m

15-18 m

25-30 m

PoT1/2-135S

4028T.S

200ms 2 p

A

Control

4028T.G

200ms 1p

A

4028T.V

2s 1 pA

+40mV

+40mV

Page 12: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

RNA Release

VP4

mutants

“Environmentally

Stable”

“Environmentally

Unstable”

15-20 min

Ion Channel/RNA delivery

80SParticle

?Membrane insertion

135S Particle

160S

Particle

Entry

Active

Particle

“Docking”

“Energy”

+ PVR

X

Page 13: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Functional reconstitution of purified PVR/gpi onto cells

M PVR M PVR

Silver Western

Mock Tf

PVR/gpi

Phase GFP+

Page 14: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Functional Reconstitution of PVR in lipid bilayers

WT21°C

21°C

4028T.G 21°C

21°C

31°C

+Virus

PVR-GPI

1s5

pA

+Virus

PVR-GPI

+Virus

500ms

2 p

A

Page 15: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

21°C

31°C

21°C

Temperature Dependent Conformational Change of PVR - Virus Channel in Lipid Bilayers

~120-140

~90-100

~60

+PVR (sol)

Heat

+Membrane

Ea (kcals/mole)160S - 135S

asolecitin/hPVR

Lipid/PVR

asolecitin/PVRgpi

PE:PS/PVRgpi

Single Channel Conductance (pS)

65±15 ~460

360±56

~7

8

6

Temperature (°C)

45±7

1450±350264±5

3121Voltage -Gated

No

No

No

Q10

Page 16: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

160S

PVR

Channel model of poliovirus entry

160S

PVR

135S

delivery of viral RNA genome into

cell cytoplasm

Page 17: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Bubeck et al (2005) Nat Struct. Mol.Biol. 12:615-618

QuickTime™ and aDV/DVCPRO - NTSC decompressor

are needed to see this picture.

Page 18: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Future Directions

1. Define the architecture and structure of the channel

2. Corelate channel behavior in bilayers with mutant entry phenotypes

3. Direct in vivo measurements during infection process

Page 19: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

+PVR ?

Functional Transitions of Poliovirus

Storageand Protection

(160S)

Delivery(135S)

Empty (80S)

Page 20: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

Mutant Analyses

Pranav Danthi

Xiaojing Ning

Qi-Han Li

Nicola Moscufo

Receptor

Yan Huang

Hong Wang

Anatoli Naumov

Electrophysiology

Magdalena Tosteson (Harvard)

Khaled Machaca (UAMS)

Structure

Jim Hogle

Dave Filman

Doryen Bubeck

Mihnea Bostina

his collaborators:

A. Stevens (NIH)

R. McIntosh (UC Boulder)

Page 21: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.
Page 22: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.
Page 23: Poliovirus Genome Organization Genomic RNA VPg IRES3'-UT 74373707440 AAA Polyprotein P1P2P3 1B1A 3AB3C3D 2C2B2A1D1AB1C VP4VP2VP3VP1 Capsid ProteinsReplication.

V 10 20 300 45Medium

VP4

-VP4

MembraneV 10 20 300 45min pi

VP3

VP2VP1

Autorad

QuickTime™ and aGraphics decompressorare needed to see this picture.

◆◆◆◆◆

●●●●●

▲▲▲▲▲▲

media

membrane

cytoplasm

100

80

60

40

0

20

0 20 30 40 50 6010

Time Post-Infection (min.)

% T

ota

l C

PM

VP4 is inserted into microsomal membranes