Pistoia Alliance RSC evening event 2015: Misha Kaphushesky, GeneStack, on the success of Sequence...
8
GENOMICS OPERATING SYSTEM
-
Upload
pistoia-alliance -
Category
Science
-
view
109 -
download
0
Transcript of Pistoia Alliance RSC evening event 2015: Misha Kaphushesky, GeneStack, on the success of Sequence...
GENOMICS
OPERATING
SYSTEM
SEQUENCE SERVICES RFP
Consortium with Constellation Technologies
Genestack Alpha Pilot shown at Bio-IT World ‘12
GENESTACKUniversal Platform for Bioinformatics Data and Apps On & Off the Cloud
Interactive & Computational Apps
Robust, Reusable, Reproducible Data Flows
Secure Data Management and Storage
Public Data Index and Repository
GENESTACK PLATFORM
Format-Free Biological Objects with Rich Metadata
Unified Searchable Public Data Repository
Reproducible Pipelines as Data Flows
Open Source & Proprietary Tools
SDK for Bioinformaticians & App Developers
DOMAIN SPECIFIC OPERATING SYSTEM
PLATFORM.GENESTACK.ORG
Free community edition on the cloud
Core genomics toolbox of open source tools
Sharing, collaboration and SDKs
Single Cell RNA-SEQ
assess technical & bio noise identify heterogeneous expression identify homogeneous subpopulations
reproducible dataflow
Mapped Reads QC Report (181 Samples)Samples are sorted by Disease 2, and then by Mapped mate pairs.
CCPA - NG-7324_MRAB1418_lib41301_2924_3CCPA - NG-7324_MRAB1252_lib41292_2807_7CCPA - NG-7324_MRAB1415_lib41300_2924_3
CCPA - NG-7324_MRAB1415_lib41300_3058_6_1CCPA - NG-7324_MRAB1418_lib41301_3058_6_1
CCPA - NG-7324_MRAB1252_lib41292_2846_7CCPA - NG-7324_MRABg420_lib41216_2389_8
CCPA - NG-7324_GOLD26_lib41275_2807_3CCPA - NG-7324_GOLD184_lib41184_2415_1CCPA - NG-7324_GOLD166_lib41183_2415_1CCPA - NG-7324_GOLD360_lib41232_2415_8
CCPA - NG-7324_GOLD30_lib41197_2415_3CCPA - NG-7324_MRABg159_lib41181_2415_1
CCPA - NG-7324_GOLD38_lib41198_2415_3CCPA - NG-7324_GOLD310_lib41207_2415_5
CCPA - NG-7324_MRAB1615_lib41315_2924_1No CCPA - NG-7324_MRAB1411_lib41298_3058_6_1No CCPA - NG-7324_MRAB1412_lib41299_3058_6_1No CCPA - NG-7324_MRAB1338_lib41294_3058_6_1No CCPA - NG-7324_MRAB1583_lib41308_3058_7_1
No CCPA - NG-7324_MRAB1444_lib41303_2924_2No CCPA - NG-7324_MRAB1394_lib41297_3058_6_1
No CCPA - NG-7324_MRAB1515_lib41305_2924_3No CCPA - NG-7324_MRAB1443_lib41302_3058_6_1
No CCPA - NG-7324_MRAB1544_lib41307_2924_1No CCPA - NG-7324_MRAB1337_lib41293_2924_7No CCPA - NG-7324_MRABg279_lib41290_2807_5
No CCPA - NG-7324_MRAB1585_lib41309_3058_7_1No CCPA - NG-7324_MRAB1374_lib41295_2924_7
No CCPA - NG-7324_MRAB1539_lib41306_3058_7_1No CCPA - NG-7324_MRABg502_lib41291_2807_5No CCPA - NG-7324_MRABg371_lib41287_2807_5
No CCPA - NG-7324_MRAB1445_lib41304_3058_7_1No CCPA - NG-7324_MRAB1585_lib41309_2924_3No CCPA - NG-7324_MRABg154_lib41289_2807_5No CCPA - NG-7324_MRAB1443_lib41302_2924_1
No CCPA - NG-7324_MRAB1390_lib41296_3058_6_1No CCPA - NG-7324_MRABg356_lib41288_2807_5No CCPA - NG-7324_MRAB1594_lib41310_2924_1No CCPA - NG-7324_MRAB1390_lib41296_2924_7No CCPA - NG-7324_MRAB1338_lib41294_2924_7
No CCPA - NG-7324_MRAB1594_lib41310_3058_7_1No CCPA - NG-7324_MRAB1445_lib41304_2924_1No CCPA - NG-7324_MRAB1394_lib41297_2924_7No CCPA - NG-7324_MRAB1539_lib41306_2924_1No CCPA - NG-7324_MRAB1583_lib41308_2924_1
No CCPA - NG-7324_MRAB1374_lib41295_3058_6_1No CCPA - NG-7324_MRAB1412_lib41299_2924_7
No CCPA - NG-7324_MRAB1544_lib41307_3058_7_1No CCPA - NG-7324_MRAB1614_lib41314_3058_7_1
No CCPA - NG-7324_MRAB1411_lib41298_2924_7No CCPA - NG-7324_MRAB1614_lib41314_2924_2
No CCPA - NG-7324_MRAB1337_lib41293_3058_6_1No CCPA - NG-7324_MRABg356_lib41288_2846_7No CCPA - NG-7324_MRABg279_lib41290_2846_7
No CCPA - NG-7324_MRAB1515_lib41305_3058_7_1No CCPA - NG-7324_MRAB1444_lib41303_3058_7_1
No CCPA - NG-7324_MRABg502_lib41291_2846_7No CCPA - NG-7324_MRABg154_lib41289_2846_7No CCPA - NG-7324_MRABg371_lib41287_2846_7No CCPA - NG-7324_MRABg611_lib41256_2699_2
No CCPA - NG-7324_MRABg74_lib41280_2807_4No CCPA - NG-7324_MRAB1846_lib41321_2924_4
No CCPA - NG-7324_MRABg39_lib41260_2699_2No CCPA - NG-7324_MRAB1613_lib41313_2924_2
No CCPA - NG-7324_MRABg24_lib41269_2807_3No CCPA - NG-7324_MRABg71_lib41279_2807_4
No CCPA - NG-7324_MRABg317_lib41208_2415_6No CCPA - NG-7324_MRABg37_lib41273_2807_3No CCPA - NG-7324_MRABg78_lib41282_2807_4
No CCPA - NG-7324_MRABg283_lib41202_2415_5No CCPA - NG-7324_GOLD62_lib41174_2415_2
No CCPA - NG-7324_MRABg421_lib41217_2389_8No CCPA - NG-7324_MRABg579_lib41252_2699_1
No CCPA - NG-7324_GOLD597_lib41254_2699_1No CCPA - NG-7324_MRABg25_lib41220_2389_8No CCPA - NG-7324_MRABg31_lib41276_2807_3
No CCPA - NG-7324_MRABg537_lib41250_2598_7No CCPA - NG-7324_MRABg117_lib41262_2699_2No CCPA - NG-7324_MRABg392_lib41218_2389_8No CCPA - NG-7324_MRAB1690_lib41317_2924_2No CCPA - NG-7324_MRABg389_lib41219_2389_8No CCPA - NG-7324_MRABg378_lib41230_2415_8No CCPA - NG-7324_MRAB2005_lib41326_2924_4No CCPA - NG-7324_MRABg372_lib41225_2415_7
No CCPA - NG-7324_GOLD578_lib41253_2699_1No CCPA - NG-7324_MRABg54_lib41186_2415_1
No CCPA - NG-7324_MRABg363_lib41223_2415_7No CCPA - NG-7324_MRABg151_lib41180_2415_1No CCPA - NG-7324_MRABg321_lib41209_2415_6No CCPA - NG-7324_MRABg622_lib41286_2807_5No CCPA - NG-7324_MRABg302_lib41206_2415_5
No CCPA - NG-7324_MRABg48_lib41234_2415_8No CCPA - NG-7324_MRABg160_lib41182_2415_1No CCPA - NG-7324_MRABg398_lib41215_2389_8No CCPA - NG-7324_MRABg140_lib41193_2415_4No CCPA - NG-7324_MRABg575_lib41249_2598_8No CCPA - NG-7324_MRABg137_lib41178_2415_2No CCPA - NG-7324_MRABg339_lib41228_2415_7
No CCPA - NG-7324_MRABg83_lib41284_2807_4No CCPA - NG-7324_MRABg175_lib41185_2415_1No CCPA - NG-7324_MRABg336_lib41242_2598_8No CCPA - NG-7324_MRABg286_lib41203_2415_5No CCPA - NG-7324_MRABg614_lib41257_2699_1
No CCPA - NG-7324_MRABg68_lib41192_2415_4No CCPA - NG-7324_MRABg278_lib41201_2415_5No CCPA - NG-7324_MRABg538_lib41235_2415_8No CCPA - NG-7324_MRABg125_lib41267_2699_3No CCPA - NG-7324_MRABg550_lib41243_2598_8No CCPA - NG-7324_MRABg257_lib41196_2415_4
No CCPA - NG-7324_MRABg75_lib41175_2415_2No CCPA - NG-7324_MRABg275_lib41247_2598_8No CCPA - NG-7324_MRABg562_lib41236_2389_8No CCPA - NG-7324_MRABg460_lib41210_2415_6No CCPA - NG-7324_MRABg484_lib41251_2632_1No CCPA - NG-7324_MRABg233_lib41190_2415_3No CCPA - NG-7324_MRABg136_lib41177_2415_2
No CCPA - NG-7324_MRABg36_lib41274_2807_3No CCPA - NG-7324_MRABg362_lib41222_2415_7No CCPA - NG-7324_MRABg287_lib41204_2415_5No CCPA - NG-7324_MRABg172_lib41246_2598_8No CCPA - NG-7324_MRABg179_lib41187_2415_3No CCPA - NG-7324_MRABg245_lib41194_2415_4
No CCPA - NG-7324_MRABg80_lib41199_2415_4No CCPA - NG-7324_MRAB1985_lib41324_2924_4
No CCPA - NG-7324_MRABg81_lib41200_2415_4No CCPA - NG-7324_MRABg349_lib41231_2415_8
No CCPA - NG-7324_MRABg73_lib41261_2699_2No CCPA - NG-7324_MRAB1917_lib41322_2924_4
Mapped mate pairs Partially mapped mate pairs Properly mapped mate pairs
UHSM EXOMES
Exome case-control (1000G) association analysis
Robust open source standard tools pipeline
Interactive apps for qc, variants and browsing
GENESTACK SERVICESTraining & Support
Custom Analyses, Apps & Pipelines
Sequencing Partners
