Phenome Database Integration Workshop Barcelona 26th February 2006
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Phenome Database Integration Workshop Barcelona 26th February 2006 Searching distributed phenomic databases Simon Greenaway, Medical Research Council, Harwell,
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Phenome Database Integration Workshop Barcelona 26th February 2006. Searching distributed phenomic databases Simon Greenaway, Medical Research Council, Harwell,. Phenome Database Integration Workshop Barcelona 26th February 2006. Contents:. 1. Overview of available resources. - PowerPoint PPT Presentation
Transcript of Phenome Database Integration Workshop Barcelona 26th February 2006
Phenome Database Integration WorkshopBarcelona
26th February 2006
Searching distributed phenomic databasesSimon Greenaway, Medical Research Council, Harwell,
Phenome Database Integration WorkshopBarcelona
26th February 2006
Contents:
1. Overview of available resources
2. Searching resources
3. Solutions….
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
MPD - Mouse Phenome DatabaseJackson Laboratory
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
MPD - Mouse Phenome DatabaseJackson Laboratory
Hierarchical browser of phenotype measurement types
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
MPD - Mouse Phenome DatabaseJackson Laboratory
Hierarchical browser of phenotype measurement types
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
MPD - Mouse Phenome DatabaseJackson Laboratory
Hierarchical browser of phenotype measurement types
Graphical and numerical data displays
No easy download of selected data
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
europhenome
Hierarchical browser of phenotype measurement types
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
europhenome
Hierarchical browser of phenotype measurement types
Numerical data displays
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
europhenome
Hierarchical browser of phenotype measurement types
Numerical data displays
No download of selected data
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
MGI Mammalian Phenotype Browser
Access to ‘characterised’ phenotype data
Can this type of data be described by the same XMLSchema as numerical phenotype data?
Ontological structure - but does not exploit the rich structure of ontologies.
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
Access to ‘characterised’ phenotype data
Can this type of data be described by the same XMLSchema as numerical phenotype data?
Ontological structure - but does not exploit the rich structure of ontologies.
MGI Mammalian Phenotype Browser
Phenome Database Integration WorkshopBarcelona
26th February 2006
1. Overview of available resources
Access to ‘characterised’ phenotype data
Can this type of data be described by the same XMLSchema as numerical phenotype data?
Ontological structure - but does not exploit the rich structure of ontologies.
MGI Mammalian Phenotype Browser
Phenome Database Integration WorkshopBarcelona
26th February 2006
2. Searching resources
Two sorts of data that could be searched:
1. Metadata - allows finding what data a site holds.
2. Data - allows analysis of phenotype data acrosssites. A global mouse phenotype datasource.
Phenome Database Integration WorkshopBarcelona
26th February 2006
3. Solutions….
Common data transfer standards
Simple API to publish data to external applications
More complex API for high-throughput applications
XML Schema, one for metadata and one for data?Cross-mapping of fields decided by each group?Can one schema describe numerical and non-numerical data?
Web-based, simple search API & XML results?
‘Grid’ based API?
