Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

173
1 Supporting Information Pharmacophore modeling for qualitative prediction of antiestrogenic activity Simone Brogi, Maria Kladi, Constantinos Vagias, Panagiota Papazafiri, § Vassilios Roussis and Andrea Tafi ‡* Table of Contents 1. Fig. S1: superposition between the pharmacophore conformation of derivative 32 and the crystal geometry of this ligand when complexed with ER-α.---------------------------------------p 2 2. Fig. S2: superposition between the pharmacophore conformation of derivative 45 and the crystal geometry of this ligand when complexed with ER-α.---------------------------------------p 2 3. Fig. S3: best docking pose of compounds BAS-8770034, BAS0511524, BAS1813090 and raloxifene into ER-α ligand binding domain.---------------------------------------------------------p 3 4. Catalyst output file.---------------------------------------------------------------------------------------p 4 5. Aligned structures of all the studied derivatives (three-dimensional .SD file).------------------p 13

description

A ligand-based pharmacophore approach for the prediction of antiestrogenic activity to be used as an in silico screening tool for bioactive compounds including natural products was developed using Catalyst HypoGen. The generated pharmacophore hypothesis (HYPO-7) consisted of five features, namely, one hydrophobic (HY1), two hydrophobic aromatic (HY2), one hydrogen-bond acceptor (HBA), and one hydrogen-bond donor (HBD). HYPO-7 successfully predicted the lack of cytotoxicity of a number of new metabolites isolated from the red alga Laurencia glandulifera. Furthermore, a screening of the Asinex Gold Collection database was performed by coupling HYPO-7 with a docking filtration, which resulted in a restricted set of 12 new scaffolds to be investigated as potential SERMs. The inhibitory activity of these compounds was evaluated in vitro using MCF7 human breast adenocarcinoma cell line. Ten out of the twelve compounds exhibited inhibitory activity with IC50 values between 26 and 188 μM. This result shows that application of HYPO-7 could assist in the selection of potentially active compounds, thus expediting the hit discovery process.

Transcript of Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

Page 1: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

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Supporting Information

Pharmacophore modeling for qualitative prediction of

antiestrogenic activity

Simone Brogi,‡

Maria Kladi,†

Constantinos Vagias,†

Panagiota Papazafiri,§

Vassilios Roussis†

and

Andrea Tafi‡*

Table of Contents

1. Fig. S1: superposition between the pharmacophore conformation of derivative 32 and the

crystal geometry of this ligand when complexed with ER-α.---------------------------------------p 2

2. Fig. S2: superposition between the pharmacophore conformation of derivative 45 and the

crystal geometry of this ligand when complexed with ER-α.---------------------------------------p 2

3. Fig. S3: best docking pose of compounds BAS-8770034, BAS0511524, BAS1813090 and

raloxifene into ER-α ligand binding domain.---------------------------------------------------------p 3

4. Catalyst output file.---------------------------------------------------------------------------------------p 4

5. Aligned structures of all the studied derivatives (three-dimensional .SD file).------------------p 13

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Figure S1 Superposition between the pharmacophore conformation of compound 32 (yellow) and the

crystal geometry of the ligand when complexed with ER-α (red).

Figure S2 Superposition between the pharmacophore conformation of compound 45 (yellow) and the

crystal geometry of the ligand when complexed with ER-α (red).

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Figure S3 Best docking pose of compounds: (a) BAS-8770034, (b) BAS0511524, (c) BAS1813090

and (d) raloxifene into ER-α ligand binding domain. The side chains of residues His524, Glu353 and

Arg394,29

forming hydrogen bonding interactions with the ligands, are shown in tube representation.

The figure suggests an interaction pattern of the derivatives retrieved from the Asinex Gold Collection

database, comparable with that of raloxifene (and of the SERMs used to derive HYPO-7).

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Output file of Catalyst run

Summary of parameters:

HyposReported 10

Spacing 200

MinPoints 4

MinSubsetPoints 4

SuperpositionError 1

Misses 1

FeatureMisses 1

CompleteMisses 0.0e+00

ToleranceFactor 1

CheckSuperposition 1

WeightVariation 0.3

MappingCoeff 0.0e+00

Mem 60

IdealHBondGeomOnly 0.0e+00

VariableWeight 0.0e+00

VariableTolerance 0.0e+00

Constraints on numbers of features:

Name: HBA HBD HYDROPHOBIC HYDROPHOB aromatiRING AROMATIC Total

Min: 0 0 0 0 0 1

Max: 5 5 5 5 5 10

Best records in pass 8.

dumping score for hypothesis 1

Definition: HBD HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 5 EVolumes

Weights: 2.20191 2.20191 2.20191 2.20191

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 0.99 0.54 1.75 3.55 -1.27 1.25

: Y -0.35 1.89 -2.30 -8.21 -8.85 -9.65

: Z 1.32 3.27 1.25 1.83 3.98 2.56

o---------> o o o--------->

Excluded volume ( -4.65 , -9.14 , 1.20 ) Tol: 120.00

Excluded volume ( 5.40 , -12.32 , 2.92 ) Tol: 120.00

Excluded volume ( 6.00 , -6.23 , 0.62 ) Tol: 120.00

Excluded volume ( 0.56 , -7.36 , -1.34 ) Tol: 120.00

Excluded volume ( 4.66 , -8.15 , -3.79 ) Tol: 120.00

HBD o

---> 3.0

HYDROPHOB aroma2.1 4.8

HYDROPHOBIC o 8.3 10.6 6.2

RING AROMATIC o9.2 10.9 7.7 5.3

---> 9.4 11.6 7.5 2.8 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.56 93 - [50 45 54 28 ] 0.016 0.02 - 1.2 1.5

diphenylfuran6dl 6.90 161 + [5 1 41 30 ] 0.074 0.039 + 1.9 1.5

way3540079 6.41 7 + [18 1 26 * ] 0.23 0.079 + 2.9 1.5

arylbenzo1 6.04 16 + [* 59 28 24 ] 0.55 0.3 + 1.8 1.5

dnp13813 6.22 2 + [27 22 1 * ] 0.36 0.34 + 1.1 1.5

tamoxifen 6.14 43 - [* 9 31 47 ] 0.43 0.48 - 1.1 1.5

way-818 6.35 6 + [18 1 21 * ] 0.26 1.1 - 4.2 1.5

daidzein 5.32 9 + [29 20 * 1 ] 2.8 2.3 + 1.2 1.5

dnp13809 5.13 20 + [32 9 16 * ] 4.5 4.1 + 1.1 1.5

compound3b 5.49 140 - [34 18 9 * ] 1.9 5 - 2.6 1.5

compound6 5.17 6 + [15 18 * 1 ] 4.1 7 - 1.7 1.5

compound3f 4.40 102 + [* 18 * 1 ] 24 9 + 2.6 1.5

rouss2007cpd5 4.65 47 + [14 * 1 35 ] 13 11 + 1.2 1.5

compound11 4.81 33 - [29 19 * 1 ] 9.2 11 - 1.2 1.5

compound3g 4.40 148 + [* 28 * 1 ] 24 13 + 1.8 1.5

dnp13800 4.64 21 - [12 17 * 3 ] 14 24 - 1.8 1.5

bis9pmethylphenylmethyl 4.06 2 - [* * 32 17 ] 52 62 - 1.2 1.5

25larintero 4.17 00 + [36 11 * * ] 40 67 - 1.7 1.5

lactandrato 4.06 7 + [* * 14 3 ] 52 100 - 1.9 1.5

17 cuparene type 3.70 25 + [16 7 * * ] 120 100 + 1.2 1.5

48intricenyne 4.05 8 + [35 * 10 * ] 53 120 - 2.2 1.5

alfa isobromocuparene 3.67 13 + [* * 27 6 ] 130 180 - 1.4 1.5

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24cyclolaurene 3.14 00 + [* * 22 1 ] 430 230 + 1.8 1.5

alfa bromocuparene 3.10 00 + [* * 22 6 ] 470 270 + 1.8 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=110.774 RMS=1.53286 correl=0.974238

Cost components: Error=88.5418 Weight=1.34849 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 2

Definition: HBD HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 3 EVolumes

Weights: 2.39037 2.39037 2.39037 2.39037

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 1.07 -1.13 1.65 3.55 -1.03 1.81

: Y -0.63 1.37 -2.43 -8.21 -8.99 -9.50

: Z 1.32 1.67 1.74 2.23 4.49 3.66

o---------> o o o--------->

Excluded volume ( 2.66 , -11.97 , 1.81 ) Tol: 120.00

Excluded volume ( 6.37 , -5.53 , 3.24 ) Tol: 120.00

Excluded volume ( 5.95 , -9.08 , -1.34 ) Tol: 120.00

HBD o

---> 3.0

HYDROPHOB aroma1.9 4.7

HYDROPHOBIC o 8.0 10.7 6.1

RING AROMATIC o9.2 10.7 7.6 5.2

---> 9.2 11.4 7.3 2.6 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 8.56 78 + [50 49 54 28 ] 5.5e-03 0.02 - 3.6 1.5

diphenylfuran6dl 7.35 6 - [5 1 41 30 ] 0.089 0.039 + 2.3 1.5

way3540079 6.73 7 + [7 26 1 * ] 0.38 0.079 + 4.8 1.5

arylbenzo1 6.52 53 + [* 59 31 24 ] 0.6 0.3 + 2 1.5

dnp13813 6.73 9 + [4 1 * 17 ] 0.37 0.34 + 1.1 1.5

tamoxifen 6.85 43 + [* 9 31 47 ] 0.28 0.48 - 1.7 1.5

way-818 6.33 6 - [7 21 1 * ] 0.95 1.1 - 1.2 1.5

daidzein 5.92 9 + [11 1 * 3 ] 2.4 2.3 + 1 1.5

dnp13809 5.73 16 + [32 9 19 * ] 3.8 4.1 - 1.1 1.5

compound3b 5.74 180 + [33 30 * 1 ] 3.7 5 - 1.4 1.5

compound6 5.48 6 + [15 18 * 1 ] 6.7 7 - 1 1.5

compound3f 4.78 152 + [* 18 * 1 ] 34 9 + 3.7 1.5

rouss2007cpd5 5.39 47 + [14 * 1 35 ] 8.2 11 - 1.3 1.5

compound11 5.59 17 - [28 19 * 1 ] 5.2 11 - 2.1 1.5

compound3g 4.78 149 + [* 18 * 1 ] 33 13 + 2.6 1.5

dnp13800 5.13 10 + [12 17 * 3 ] 15 24 - 1.6 1.5

bis9pmethylphenylmethyl 4.60 148 - [* * 7 17 ] 51 62 - 1.2 1.5

25larintero 4.50 10 + [36 11 * * ] 64 67 - 1.1 1.5

lactandrato 4.63 178 + [* * 58 3 ] 47 100 - 2.1 1.5

17 cuparene type 4.57 9 + [16 7 * * ] 54 100 - 1.9 1.5

48intricenyne 4.77 194 + [35 * 22 * ] 35 120 - 3.4 1.5

alfa isobromocuparene 4.26 7 + [* * 27 6 ] 110 180 - 1.6 1.5

24cyclolaurene 3.80 5 + [* * 32 1 ] 320 230 + 1.4 1.5

alfa bromocuparene 3.70 4 + [* * 35 6 ] 400 270 + 1.5 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=122.551 RMS=1.80081 correl=0.967272

Cost components: Error=99.7073 Weight=1.96064 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 3

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Definition: HBD HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 4 EVolumes

Weights: 2.25205 2.25205 2.25205 2.25205

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 0.96 2.73 1.05 3.95 -0.84 0.92

: Y -0.97 -0.21 -2.92 -7.81 -8.51 -8.83

: Z -0.14 -2.44 1.22 3.43 3.92 6.32

o---------> o o o--------->

Excluded volume ( -5.29 , -8.78 , 5.82 ) Tol: 120.00

Excluded volume ( 5.95 , -10.98 , 1.79 ) Tol: 120.00

Excluded volume ( -2.80 , 0.66 , 2.40 ) Tol: 120.00

Excluded volume ( 0.56 , -11.98 , -2.82 ) Tol: 120.00

HBD o

---> 3.0

HYDROPHOB aroma2.4 4.9

HYDROPHOBIC o 8.3 9.7 6.1

RING AROMATIC o8.7 11.1 6.5 4.9

---> 10.2 12.4 7.8 4.3 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 8.34 8 - [50 45 54 28 ] 0.011 0.02 - 1.9 1.5

diphenylfuran6dl 7.61 39 + [5 1 41 30 ] 0.057 0.039 + 1.5 1.5

way3540079 7.01 14 - [18 1 31 14 ] 0.23 0.079 + 2.9 1.5

arylbenzo1 6.48 33 + [* 58 1 24 ] 0.76 0.3 + 2.5 1.5

dnp13813 6.51 9 - [4 1 22 * ] 0.71 0.34 + 2.1 1.5

tamoxifen 6.55 34 + [* 9 44 47 ] 0.66 0.48 + 1.4 1.5

way-818 6.53 2 - [7 21 1 * ] 0.69 1.1 - 1.6 1.5

daidzein 6.31 10 + [29 20 * 1 ] 1.1 2.3 - 2 1.5

dnp13809 5.69 4 - [32 9 19 * ] 4.8 4.1 + 1.2 1.5

compound3b 6.30 39 + [34 18 3 1 ] 1.2 5 - 4.3 1.5

compound6 5.42 25 - [15 18 * 1 ] 8.8 7 + 1.3 1.5

compound3f 4.49 79 + [* 12 * 18 ] 75 9 + 8.4 1.5

rouss2007cpd5 5.57 73 + [* 44 11 13 ] 6.3 11 - 1.7 1.5

compound11 5.33 33 + [29 19 * 1 ] 11 11 - 1 1.5

compound3g 4.48 145 + [* 12 * 18 ] 77 13 + 5.9 1.5

dnp13800 5.60 5 - [12 15 * 3 ] 5.8 24 - 4.1 1.5

bis9pmethylphenylmethyl 5.22 225 - [* 24 7 1 ] 14 62 - 4.4 1.5

25larintero 4.36 7 + [* * 32 1 ] 100 67 + 1.5 1.5

lactandrato 4.46 231 + [* * 14 3 ] 80 100 - 1.2 1.5

17 cuparene type 4.33 29 + [* * 20 6 ] 110 100 + 1 1.5

48intricenyne 4.50 247 + [35 * 2 * ] 74 120 - 1.6 1.5

alfa isobromocuparene 4.40 3 + [* * 27 6 ] 93 180 - 1.9 1.5

24cyclolaurene 4.37 2 + [* * 22 1 ] 100 230 - 2.3 1.5

alfa bromocuparene 4.23 10 + [* * 22 6 ] 140 270 - 1.9 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=148.255 RMS=2.31512 correl=0.940203

Cost components: Error=126.168 Weight=1.47331 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 4

Definition: HBD HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC

Weights: 2.75206 2.75206 2.75206 2.75206

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 0.21 -1.65 2.10 4.30 -1.42 -0.13

: Y -4.65 -3.61 -3.84 -0.06 -0.12 1.06

: Z -1.63 -3.74 -0.38 3.99 3.58 6.02

o---------> o o o--------->

HBD o

---> 3.0

HYDROPHOB aroma2.4 5.0

HYDROPHOBIC o 8.3 10.4 6.2

RING AROMATIC o7.1 8.1 6.5 5.7

---> 9.6 10.9 8.4 5.0 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

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arylbenzo37 8.85 42 - [50 49 54 28 ] 0.034 0.02 + 1.7 1.5

diphenylfuran6dl 8.15 67 + [5 1 41 * ] 0.17 0.039 + 4.3 1.5

way3540079 7.96 8 + [18 1 31 * ] 0.27 0.079 + 3.4 1.5

arylbenzo1 7.64 6 - [* 26 59 28 ] 0.56 0.3 + 1.9 1.5

dnp13813 7.72 9 - [4 1 22 * ] 0.46 0.34 + 1.4 1.5

tamoxifen 8.19 34 + [* 9 31 47 ] 0.16 0.48 - 3.1 1.5

way-818 7.61 2 - [18 1 21 * ] 0.59 1.1 - 1.9 1.5

daidzein 7.20 10 - [11 1 20 * ] 1.5 2.3 - 1.5 1.5

dnp13809 6.59 4 - [32 9 19 * ] 6.2 4.1 + 1.5 1.5

compound3b 7.62 39 - [34 18 3 * ] 0.58 5 - 8.6 1.5

compound6 6.70 9 + [15 18 9 * ] 4.8 7 - 1.5 1.5

compound3f 5.47 73 + [* 9 * 18 ] 81 9 + 9 1.5

rouss2007cpd5 6.71 73 - [* 44 11 13 ] 4.8 11 - 2.3 1.5

compound11 6.36 17 + [29 19 1 * ] 10 11 - 1 1.5

compound3g 5.50 230 + [* 12 * 18 ] 77 13 + 5.9 1.5

dnp13800 6.52 00 + [12 17 23 * ] 7.3 24 - 3.3 1.5

bis9pmethylphenylmethyl 5.50 5 + [* 18 32 * ] 76 62 + 1.2 1.5

25larintero 5.35 10 + [36 11 * * ] 110 67 + 1.6 1.5

lactandrato 5.51 176 + [69 * 14 3 ] 75 100 - 1.3 1.5

17 cuparene type 5.50 4 + [* 7 34 * ] 76 100 - 1.4 1.5

48intricenyne 5.50 7 + [35 * 2 * ] 77 120 - 1.5 1.5

alfa isobromocuparene 5.49 00 + [* 6 27 * ] 77 180 - 2.3 1.5

24cyclolaurene 5.22 2 + [* * 32 1 ] 150 230 - 1.6 1.5

alfa bromocuparene 5.50 5 + [* 6 27 * ] 76 270 - 3.5 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=162.155 RMS=2.49598 correl=0.930189

Cost components: Error=137.045 Weight=4.22668 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 5

Definition: HBA HYDROPHOB aromaHYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 4

EVolumes

Weights: 1.98747 1.98747 1.98747 1.98747 1.98747

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60 1.60

Coords: X -2.98 -4.15 4.28 -0.63 5.04 1.63 1.47

: Y -0.01 0.31 4.60 0.13 -1.05 0.44 3.43

: Z 1.92 -0.82 4.76 1.81 2.69 1.35 1.47

o---------> o o o o--------->

Excluded volume ( 6.32 , 1.75 , 0.64 ) Tol: 120.00

Excluded volume ( 6.36 , 2.87 , -5.00 ) Tol: 120.00

Excluded volume ( -8.99 , 2.70 , 4.52 ) Tol: 120.00

Excluded volume ( -2.81 , -7.36 , -1.76 ) Tol: 120.00

HBA o

---> 3.0

HYDROPHOB aroma9.1 11.0

HYDROPHOB aroma2.4 4.4 7.3

HYDROPHOBIC o 8.1 9.9 6.1 5.9

RING AROMATIC o4.7 6.2 6.0 2.3 4.0

---> 5.6 6.8 4.5 3.9 5.9 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.99 73 + [50 31 45 54 10 ] 0.014 0.02 - 1.4 1.5

diphenylfuran6dl 7.12 22 - [40 2 39 41 * ] 0.11 0.039 + 2.8 1.5

way3540079 6.64 7 + [7 * 26 1 13 ] 0.32 0.079 + 4.1 1.5

arylbenzo1 6.98 24 + [25 46 28 59 * ] 0.15 0.3 - 2 1.5

dnp13813 6.20 2 - [4 * 1 22 11 ] 0.9 0.34 + 2.6 1.5

tamoxifen 6.16 13 + [20 9 34 44 * ] 0.98 0.48 + 2 1.5

way-818 6.26 2 + [7 * 21 1 13 ] 0.77 1.1 - 1.4 1.5

daidzein 5.26 10 + [29 1 20 * * ] 7.7 2.3 + 3.4 1.5

dnp13809 5.24 4 + [32 * 9 19 * ] 8.2 4.1 + 2 1.5

compound3b 5.49 29 - [34 9 28 * * ] 4.6 5 - 1.1 1.5

compound6 5.53 9 - [15 9 18 * * ] 4.2 7 - 1.7 1.5

compound3f 5.93 81 - [31 1 30 * * ] 1.7 9 - 5.4 1.5

rouss2007cpd5 5.19 58 - [19 * 25 44 * ] 9.1 11 - 1.2 1.5

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compound11 4.83 17 + [29 1 19 * * ] 21 11 + 1.9 1.5

compound3g 5.95 152 - [29 12 28 * * ] 1.6 13 - 8.1 1.5

dnp13800 5.26 00 + [12 * 17 23 * ] 7.7 24 - 3.1 1.5

bis9pmethylphenylmethyl 4.55 77 - [1 * * 17 2 ] 40 62 - 1.6 1.5

25larintero 3.96 4 + [36 * 11 * * ] 160 67 + 2.3 1.5

lactandrato 5.14 15 + [33 * 5 25 * ] 10 100 - 9.7 1.5

17 cuparene type 3.97 27 + [16 * 7 * * ] 150 100 + 1.5 1.5

48intricenyne 3.87 14 + [14 * * 35 * ] 190 120 + 1.6 1.5

alfa isobromocuparene 3.91 13 + [* * * 22 6 ] 170 180 - 1 1.5

24cyclolaurene 3.96 2 + [* * * 22 1 ] 160 230 - 1.5 1.5

alfa bromocuparene 3.91 10 + [* * * 22 6 ] 180 270 - 1.5 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=166.745 RMS=2.61633 correl=0.922939

Cost components: Error=144.736 Weight=1.12577 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 6

Definition: HBD HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC

Weights: 2.49688 2.49688 2.49688 2.49688

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 1.93 4.41 2.10 4.30 -1.68 -1.32

: Y -6.13 -7.74 -3.84 -0.06 -3.90 -2.82

: Z -1.15 -1.65 -0.38 3.99 4.57 7.35

o---------> o o o--------->

HBD o

---> 3.0

HYDROPHOB aroma2.4 4.7

HYDROPHOBIC o 8.3 9.5 6.2

RING AROMATIC o7.1 9.5 6.2 7.1

---> 9.7 11.8 8.5 7.1 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 8.81 4 - [50 45 54 28 ] 0.011 0.02 - 1.8 1.5

diphenylfuran6dl 7.47 85 - [40 39 41 * ] 0.24 0.039 + 6.2 1.5

way3540079 7.25 16 - [18 1 31 * ] 0.4 0.079 + 5.1 1.5

arylbenzo1 7.34 63 - [* 28 59 24 ] 0.32 0.3 + 1.1 1.5

dnp13813 7.09 9 + [4 1 22 * ] 0.57 0.34 + 1.7 1.5

tamoxifen 7.02 6 - [* 34 9 47 ] 0.67 0.48 + 1.4 1.5

way-818 7.15 2 - [7 21 1 * ] 0.5 1.1 - 2.2 1.5

daidzein 6.33 10 + [11 1 20 * ] 3.3 2.3 + 1.4 1.5

dnp13809 6.07 4 + [32 9 19 * ] 6 4.1 + 1.5 1.5

compound3b 6.96 188 + [34 18 12 * ] 0.78 5 - 6.4 1.5

compound6 6.73 9 - [15 18 9 * ] 1.3 7 - 5.3 1.5

compound3f 4.99 80 + [* * 30 1 ] 72 9 + 7.9 1.5

rouss2007cpd5 6.36 9 - [14 * 11 35 ] 3.1 11 - 3.5 1.5

compound11 5.81 17 + [29 19 1 * ] 11 11 - 1 1.5

compound3g 4.99 152 + [* * 28 1 ] 72 13 + 5.5 1.5

dnp13800 5.83 00 + [12 17 23 * ] 10 24 - 2.3 1.5

bis9pmethylphenylmethyl 4.99 5 + [* 18 32 * ] 72 62 + 1.2 1.5

25larintero 4.97 10 + [36 11 * * ] 75 67 + 1.1 1.5

lactandrato 4.99 175 + [* 8 14 * ] 72 100 - 1.4 1.5

17 cuparene type 4.99 4 + [* 7 34 * ] 72 100 - 1.4 1.5

48intricenyne 4.98 235 + [35 * 2 * ] 75 120 - 1.6 1.5

alfa isobromocuparene 4.98 00 + [* 6 27 * ] 73 180 - 2.4 1.5

24cyclolaurene 4.60 00 + [* 9 32 * ] 180 230 - 1.3 1.5

alfa bromocuparene 4.99 5 + [* 6 27 * ] 72 270 - 3.7 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=169.835 RMS=2.64275 correl=0.921331

Cost components: Error=146.473 Weight=2.47884 Config=20.8833 Tolerance=0

Fixed Cost:

Page 9: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

9

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 7

Definition: HBA HBD HYDROPHOB aromaHYDROPHOB aromatiHYDROPHOBIC

Weights: 1.46769 1.46769 1.46769 1.46769 1.46769

Tolerances: 1.60 2.20 1.60 2.20 1.60 1.60 1.60

Coords: X 8.41 10.71 -2.71 -4.17 6.26 -0.21 4.79

: Y -2.78 -4.07 1.25 -0.71 -2.42 0.27 1.68

: Z -0.91 0.52 0.69 -1.04 0.97 1.02 4.48

o---------> o---------> o o o

HBA o

---> 3.0

HBD o 11.9 14.4

---> 12.8 15.3 3.0

HYDROPHOB aroma2.9 4.8 9.7 10.8

HYDROPHOB aroma9.3 11.8 2.7 4.6 7.0

HYDROPHOBIC o 7.9 9.2 8.4 10.8 5.6 6.2

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.17 58 + [25 50 29 49 54 ] 7.2e-03 0.02 - 2.8 1.5

diphenylfuran6dl 5.96 65 + [40 5 39 1 41 ] 0.13 0.039 + 3.3 1.5

way3540079 5.60 14 - [7 18 14 1 31 ] 0.3 0.079 + 3.5 1.5

arylbenzo1 5.13 10 - [25 * 31 59 46 ] 0.89 0.3 + 3 1.5

dnp13813 5.41 12 - [4 27 1 22 * ] 0.46 0.34 + 1.3 1.5

tamoxifen 5.03 34 - [20 * 31 9 44 ] 1.1 0.48 + 2.4 1.5

way-818 5.45 6 + [7 18 21 1 * ] 0.42 1.1 - 2.7 1.5

daidzein 4.90 9 - [11 29 1 20 * ] 1.5 2.3 - 1.5 1.5

dnp13809 4.71 21 - [32 30 9 25 * ] 2.4 4.1 - 1.7 1.5

compound3b 4.21 184 - [33 * 18 9 * ] 7.8 5 + 1.6 1.5

compound6 4.19 10 - [15 * 18 1 * ] 8.2 7 + 1.2 1.5

compound3f 4.29 120 - [31 * 30 1 * ] 6.5 9 - 1.4 1.5

rouss2007cpd5 4.18 47 - [* 14 42 * 1 ] 7.2 11 - 1.5 1.5

compound11 4.01 17 + [* 28 1 19 * ] 8.4 11 - 1.3 1.5

compound3g 4.34 140 + [29 * 28 12 * ] 5.8 13 - 2.3 1.5

dnp13800 3.81 2 + [7 * 23 * 17 ] 20 24 - 1.2 1.5

bis9pmethylphenylmethyl 2.99 217 - [1 * * 20 32 ] 140 62 + 2.2 1.5

25larintero 2.93 7 + [* 36 * 11 * ] 160 67 + 2.3 1.5

lactandrato 4.09 180 + [33 * 12 * 14 ] 10 100 - 10 1.5

17 cuparene type 2.94 4 + [* * * 7 34 ] 160 100 + 1.5 1.5

48intricenyne 2.94 2 + [* 35 * * 4 ] 160 120 + 1.3 1.5

alfa isobromocuparene 2.93 15 + [* * 6 * 32 ] 160 180 - 1.1 1.5

24cyclolaurene 2.91 00 + [* * 9 * 32 ] 170 230 - 1.4 1.5

alfa bromocuparene 2.93 5 + [* * * 6 27 ] 130 270 - 2 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=171.117 RMS=2.65908 correl=0.9603

Cost components: Error=147.555 Weight=2.67884 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 8

Definition: HBA HYDROPHOB aromaHYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 2

EVolumes

Weights: 2.12087 2.12087 2.12087 2.12087 2.12087

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60 1.60

Coords: X -2.43 -3.90 5.48 -1.03 4.47 4.15 3.92

: Y 0.45 -0.15 4.20 0.53 -0.97 2.25 3.65

: Z 1.42 -1.12 3.56 2.61 2.41 3.67 1.02

o---------> o o o o--------->

Excluded volume ( 6.32 , 1.75 , 0.64 ) Tol: 120.00

Excluded volume ( -2.81 , -7.36 , -1.76 ) Tol: 120.00

HBA o

---> 3.0

HYDROPHOB aroma9.0 11.4

Page 10: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

10

HYDROPHOB aroma1.8 4.8 7.5

HYDROPHOBIC o 7.1 9.1 5.4 5.7

RING AROMATIC o7.2 9.7 2.4 5.6 3.5

---> 7.1 9.0 3.0 6.1 4.9 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.79 39 + [50 29 45 54 * ] 0.055 0.02 + 2.7 1.5

diphenylfuran6dl 7.94 22 + [40 2 39 41 14 ] 0.038 0.039 - 1 1.5

way3540079 7.00 8 + [18 14 1 * 13 ] 0.34 0.079 + 4.3 1.5

arylbenzo1 7.59 2 - [25 46 28 47 * ] 0.086 0.3 - 3.5 1.5

dnp13813 7.07 9 + [27 1 22 * 11 ] 0.29 0.34 - 1.2 1.5

tamoxifen 6.62 4 - [20 * 31 44 47 ] 0.8 0.48 + 1.7 1.5

way-818 5.71 6 + [18 21 1 * 13 ] 6.5 1.1 + 5.9 1.5

daidzein 6.03 9 - [11 20 1 * * ] 3.1 2.3 + 1.4 1.5

dnp13809 5.62 21 - [32 25 9 * * ] 8 4.1 + 2 1.5

compound3b 5.80 47 - [34 * * 7 1 ] 5.4 5 + 1.1 1.5

compound6 5.74 7 + [15 8 18 * * ] 6.2 7 - 1.1 1.5

compound3f 6.03 28 + [31 9 18 * * ] 3.1 9 - 2.9 1.5

rouss2007cpd5 5.20 32 - [18 11 * 42 * ] 21 11 + 2 1.5

compound11 5.07 17 + [29 1 19 * * ] 29 11 + 2.6 1.5

compound3g 6.08 57 - [29 12 18 * * ] 2.8 13 - 4.6 1.5

dnp13800 5.88 21 + [12 5 17 * 2 ] 4.4 24 - 5.4 1.5

bis9pmethylphenylmethyl 5.65 21 + [* * 18 7 1 ] 7.5 62 - 8.2 1.5

25larintero 4.58 7 + [36 * 11 32 * ] 89 67 + 1.3 1.5

lactandrato 5.23 71 + [71 8 * 14 * ] 6.4 100 - 16 1.5

17 cuparene type 5.06 19 + [16 * 7 34 * ] 29 100 - 3.6 1.5

48intricenyne 4.17 9 + [14 * * 35 * ] 230 120 + 1.9 1.5

alfa isobromocuparene 4.10 9 + [* * * 29 6 ] 270 180 + 1.5 1.5

24cyclolaurene 4.18 5 + [* * * 29 1 ] 220 230 - 1.1 1.5

alfa bromocuparene 4.14 16 + [* * * 22 6 ] 240 270 - 1.1 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=174.475 RMS=2.7308 correl=0.915734

Cost components: Error=152.387 Weight=1.20504 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 9

Definition: HBA HBD HYDROPHOB aromaHYDROPHOB aromatiHYDROPHOBIC

Weights: 1.46286 1.46286 1.46286 1.46286 1.46286

Tolerances: 1.60 2.20 1.60 2.20 1.60 1.60 1.60

Coords: X -3.36 -5.48 3.69 3.99 -1.26 2.98 3.34

: Y 2.40 1.44 -5.67 -6.53 1.42 -3.50 2.46

: Z 1.89 3.86 -0.50 -3.39 2.14 0.26 -0.26

o---------> o---------> o o o

HBA o

---> 3.0

HBD o 11.0 12.4

---> 12.7 14.3 3.0

HYDROPHOB aroma2.3 4.6 9.0 11.0

HYDROPHOB aroma8.8 10.4 2.4 4.8 6.8

HYDROPHOBIC o 7.0 9.8 8.1 9.5 5.3 6.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.31 20 + [25 50 28 45 54 ] 4.9e-03 0.02 - 4.1 1.5

diphenylfuran6dl 5.59 151 - [40 5 39 1 41 ] 0.26 0.039 + 6.6 1.5

way3540079 6.15 8 - [7 18 14 1 31 ] 0.07 0.079 - 1.1 1.5

arylbenzo1 5.12 68 - [25 * 31 46 59 ] 0.76 0.3 + 2.5 1.5

dnp13813 5.30 9 - [4 27 1 22 * ] 0.5 0.34 + 1.5 1.5

tamoxifen 5.54 15 - [20 * 28 56 44 ] 0.28 0.48 - 1.7 1.5

way-818 4.46 6 + [7 18 21 1 * ] 3.4 1.1 + 3.1 1.5

daidzein 4.69 9 - [11 29 1 20 * ] 2 2.3 - 1.1 1.5

dnp13809 4.09 6 + [32 30 9 29 * ] 8.1 4.1 + 2 1.5

compound3b 4.36 39 - [* 34 12 18 3 ] 4.3 5 - 1.2 1.5

compound6 3.89 9 - [* 15 9 18 * ] 13 7 + 1.8 1.5

compound3f 4.32 5 - [31 * 18 8 * ] 4.8 9 - 1.9 1.5

rouss2007cpd5 3.96 47 + [* 14 42 * 1 ] 11 11 + 1 1.5

Page 11: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

11

compound11 3.79 17 - [29 * 19 1 * ] 16 11 + 1.5 1.5

compound3g 4.33 43 + [29 * 18 12 * ] 4.6 13 - 2.8 1.5

dnp13800 3.97 4 - [12 3 17 * * ] 11 24 - 2.3 1.5

bis9pmethylphenylmethyl 2.93 193 + [* * * 24 7 ] 120 62 + 1.9 1.5

25larintero 3.11 7 + [36 * 11 * 32 ] 78 67 + 1.2 1.5

lactandrato 4.19 208 + [* 69 8 * 14 ] 10 100 - 10 1.5

17 cuparene type 3.18 9 + [16 * 7 * 31 ] 66 100 - 1.6 1.5

48intricenyne 2.92 235 + [* 35 * * 2 ] 120 120 - 1 1.5

alfa isobromocuparene 2.93 00 + [* * 6 * 32 ] 120 180 - 1.5 1.5

24cyclolaurene 2.93 00 + [* * 9 * 32 ] 120 230 - 2 1.5

alfa bromocuparene 2.92 16 + [* * * 6 27 ] 120 270 - 2.2 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=174.906 RMS=2.71624 correl=0.936679

Cost components: Error=151.396 Weight=2.70716 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for hypothesis 10

Definition: HBA HYDROPHOB aromatiHYDROPHOBIC RING AROMATIC 3 EVolumes

Weights: 2.00520 2.00520 2.00520 2.00520

Tolerances: 1.60 2.20 1.60 1.60 1.60 1.60

Coords: X 2.94 3.39 2.67 3.26 3.54 0.54

: Y 0.84 -0.26 -6.41 -2.04 -0.75 -0.84

: Z -5.86 -8.62 0.03 1.82 -3.74 -3.71

o---------> o o o--------->

Excluded volume ( -6.51 , 4.98 , -2.74 ) Tol: 120.00

Excluded volume ( 2.99 , -4.28 , 6.16 ) Tol: 120.00

Excluded volume ( 0.67 , 1.17 , 6.08 ) Tol: 120.00

HBA o

---> 3.0

HYDROPHOB aroma9.4 10.6

HYDROPHOBIC o 8.2 10.6 4.8

RING AROMATIC o2.7 4.9 6.9 5.7

---> 3.6 5.7 7.0 6.3 3.0

Name Fit Cnf/Enan Mapping Est Act Error Unc

arylbenzo37 7.77 57 + [50 31 54 10 ] 0.023 0.02 + 1.2 1.5

diphenylfuran6dl 6.90 120 + [5 39 41 1 ] 0.17 0.039 + 4.5 1.5

way3540079 7.13 12 - [18 14 31 1 ] 0.1 0.079 + 1.3 1.5

arylbenzo1 7.05 64 + [25 46 47 28 ] 0.12 0.3 - 2.4 1.5

dnp13813 5.78 2 + [4 22 * 1 ] 2.3 0.34 + 6.7 1.5

tamoxifen 6.53 50 + [20 9 44 22 ] 0.41 0.48 - 1.2 1.5

way-818 5.68 2 + [18 21 * 1 ] 2.9 1.1 + 2.6 1.5

daidzein 5.83 10 + [11 20 * 1 ] 2 2.3 - 1.1 1.5

dnp13809 5.27 21 + [32 25 * 1 ] 7.4 4.1 + 1.8 1.5

compound3b 5.25 25 + [34 9 3 * ] 7.7 5 + 1.5 1.5

compound6 5.71 6 - [15 12 * 18 ] 2.7 7 - 2.6 1.5

compound3f 5.70 234 - [31 9 * 18 ] 2.8 9 - 3.3 1.5

rouss2007cpd5 5.58 58 - [19 * 44 22 ] 3.7 11 - 2.9 1.5

compound11 4.96 19 - [29 1 * 16 ] 15 11 + 1.4 1.5

compound3g 5.78 212 - [29 12 * 18 ] 2.3 13 - 5.7 1.5

dnp13800 4.95 26 - [12 5 * 9 ] 16 24 - 1.5 1.5

bis9pmethylphenylmethyl 4.79 237 - [33 * 7 23 ] 22 62 - 2.8 1.5

25larintero 3.95 2 + [36 * * 1 ] 150 67 + 2.3 1.5

lactandrato 5.19 9 + [71 10 14 * ] 8.8 100 - 11 1.5

17 cuparene type 3.99 4 + [* * 34 6 ] 140 100 + 1.4 1.5

48intricenyne 4.00 14 + [14 * 35 * ] 140 120 + 1.2 1.5

alfa isobromocuparene 3.82 15 + [* * 32 6 ] 210 180 + 1.2 1.5

24cyclolaurene 3.84 00 + [* * 32 1 ] 200 230 - 1.2 1.5

alfa bromocuparene 3.86 10 + [* * 27 6 ] 190 270 - 1.4 1.5

*************************************************************

Mirror image used. To turn this option off, put

catHypo.forceAbsoluteStereochemistry=1 in the .Catalyst file.

*************************************************************

totalcost=176.957 RMS=2.76807 correl=0.936307

Page 12: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

12

Cost components: Error=154.949 Weight=1.12506 Config=20.8833 Tolerance=0

Fixed Cost:

totalcost=81.1791 RMS=0 correl=0

Cost components: Error=59.1709 Weight=1.12491 Config=20.8833 Tolerance=0

dumping score for the null hypothesis:

totalcost=636.599 RMS=6.79664 correl=0

Cost components: Error=636.599 Weight=0 Config=0 Mapping=0 Tolerance=0

Version: catHypo 4.8 (189) Wednesday, June 18, 2003 at 01:02 PM

Confs (cpd): /var/tmp/OutHypo-58696-154Dir/

Spreadsheet: /var/tmp/OutHypo-58696-154Dir/ultimotraining26.spst

Dictionary: /var/tmp/OutHypo-58696-154Dir/dict.chm

Host: indy.ctf.unisi.it

Outname: OutHypo-58696

Logname: OutHypo-58696-154.log

CPU time = 11744 s System time = 8 s

Complexity 110.579

Concluded pass 8.

Finished generating a hypothesis.

Page 13: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

13

Aligned structures of all the studied derivatives (three-dimensional .SD file)

BAS-0369551

SciTegic09220911323D

56 57 0 0 0 0 999 V2000

5.9839 -2.5007 2.7639 C 0 0

5.0889 -2.2386 1.7135 C 0 0

5.5423 -2.2134 0.3839 C 0 0

6.9006 -2.4513 0.1009 C 0 0

7.8000 -2.7142 1.1507 C 0 0

7.3419 -2.7386 2.4784 C 0 0

5.5559 -2.5245 4.0100 O 0 0

4.0441 -2.0547 1.9252 H 0 0

4.8458 -2.0111 -0.4158 H 0 0

7.3852 -2.4249 -1.3114 C 0 0

8.8428 -2.8985 0.9422 H 0 0

8.0353 -2.9411 3.2794 H 0 0

6.5501 -1.8761 -2.4372 C 0 0

8.5504 -2.8843 -1.5790 N 0 0

9.0359 -2.8670 -2.9298 O 0 0

6.5140 -2.3692 5.0474 C 0 0

7.1937 -1.0067 4.9163 C 0 0

6.3130 0.1420 5.4111 C 0 0

5.7579 0.9937 4.2698 C 0 0

4.2759 1.3261 4.4470 C 0 0

3.5152 1.3550 3.1220 C 0 0

2.1237 1.2067 3.3705 O 0 0

-0.3847 0.6694 0.1280 C 0 0

0.7237 1.5277 0.0279 C 0 0

1.5759 1.7093 1.1300 C 0 0

1.3237 1.0332 2.3364 C 0 0

0.2160 0.1735 2.4349 C 0 0

-0.6377 -0.0078 1.3345 C 0 0

-1.2902 0.4760 -1.0435 C 0 0

0.9288 2.0531 -0.8954 H 0 0

2.4255 2.3705 1.0475 H 0 0

0.0170 -0.3486 3.3597 H 0 0

-1.4880 -0.6711 1.4206 H 0 0

-0.8316 -0.2089 -2.3037 C 0 0

-2.4932 0.9108 -0.9837 N 0 0

-2.9604 1.5680 0.2019 O 0 0

7.1259 -1.3183 -3.1739 H 0 0

6.0458 -2.6914 -2.9539 H 0 0

5.7845 -1.2093 -2.0383 H 0 0

8.6300 -3.5848 -3.4356 H 0 0

7.2431 -3.1734 4.9581 H 0 0

6.0001 -2.4526 6.0045 H 0 0

7.5141 -0.8312 3.8892 H 0 0

8.1542 -1.0036 5.4306 H 0 0

6.8533 0.7618 6.1262 H 0 0

5.5043 -0.2345 6.0380 H 0 0

5.9310 0.5125 3.3081 H 0 0

6.3449 1.9047 4.1492 H 0 0

4.1551 2.2698 4.9806 H 0 0

3.8065 0.6348 5.1461 H 0 0

3.8362 0.5374 2.4755 H 0 0

3.6700 2.3033 2.6078 H 0 0

Page 14: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

14

-1.6487 -0.2481 -3.0219 H 0 0

-0.4562 -1.2037 -2.0679 H 0 0

-0.0159 0.3567 -2.7569 H 0 0

-2.8377 0.9929 0.9699 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 16 1 0

10 13 1 0

10 14 2 0

13 37 1 0

13 38 1 0

13 39 1 0

14 15 1 0

15 40 1 0

16 17 1 0

16 41 1 0

16 42 1 0

17 18 1 0

17 43 1 0

17 44 1 0

18 19 1 0

18 45 1 0

18 46 1 0

19 20 1 0

19 47 1 0

19 48 1 0

20 21 1 0

20 49 1 0

20 50 1 0

21 22 1 0

21 51 1 0

21 52 1 0

22 26 1 0

23 24 2 0

23 28 1 0

23 29 1 0

24 25 1 0

24 30 1 0

25 26 2 0

25 31 1 0

26 27 1 0

27 28 2 0

27 32 1 0

28 33 1 0

29 34 1 0

29 35 2 0

34 53 1 0

34 54 1 0

Page 15: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

15

34 55 1 0

35 36 1 0

36 56 1 0

M END

> <Name>

BAS-0369551

> <Absolute Energy>

70.1468

> <Estimate>

0.671663

> <FitValue>

5.95936

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

14

0

36

0

3

28

20

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

18.5279

> <s_m_entry_id>

7

> <s_m_entry_name>

BAS-0369551.1

$$$$

BAS-0511524

SciTegic09220911323D

Page 16: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

16

50 52 0 0 0 0 999 V2000

2.0766 -0.3072 2.2176 C 0 0

1.1986 -1.2605 1.6679 C 0 0

0.0368 -0.8391 0.9959 C 0 0

-0.2523 0.5313 0.8692 C 0 0

0.6278 1.4829 1.4202 C 0 0

1.7885 1.0623 2.0926 C 0 0

3.3097 -0.7333 2.9332 C 0 0

1.4860 -2.7166 1.7903 C 0 0

-0.6361 -1.5702 0.5728 H 0 0

-1.3443 0.9149 0.2368 O 0 0

0.3362 2.9361 1.2957 C 0 0

2.4633 1.7945 2.5140 H 0 0

6.1736 -2.1778 0.0585 C 0 0

6.3072 -2.5169 1.4154 C 0 0

5.3775 -2.0503 2.3616 C 0 0

4.3053 -1.2372 1.9478 C 0 0

4.1676 -0.8975 0.5913 C 0 0

5.0989 -1.3642 -0.3531 C 0 0

7.0498 -2.6229 -0.8193 O 0 0

7.1301 -3.1412 1.7336 H 0 0

5.5380 -2.4221 3.7946 C 0 0

3.3440 -0.2726 0.2727 H 0 0

4.9422 -0.9957 -1.7849 C 0 0

4.9676 2.6226 5.0548 C 0 0

4.0380 1.7769 5.6861 C 0 0

3.4959 0.6801 4.9926 C 0 0

3.8818 0.4255 3.6657 C 0 0

4.8115 1.2714 3.0322 C 0 0

5.3519 2.3668 3.7264 C 0 0

5.4738 3.6497 5.7052 O 0 0

3.7388 1.9675 6.7045 H 0 0

2.7826 0.0349 5.4853 H 0 0

5.1116 1.0813 2.0129 H 0 0

6.0659 3.0126 3.2360 H 0 0

3.0635 -1.5250 3.6396 H 0 0

2.3793 -2.9511 2.3694 H 0 0

0.6405 -3.2152 2.2651 H 0 0

1.6116 -3.1468 0.7954 H 0 0

-1.5357 1.8569 0.1538 H 0 0

1.0819 3.5846 1.7565 H 0 0

0.2688 3.2027 0.2408 H 0 0

-0.6274 3.1550 1.7554 H 0 0

6.9532 -2.3790 -1.7488 H 0 0

4.7780 -2.0070 4.4552 H 0 0

5.5088 -3.5078 3.8937 H 0 0

6.5108 -2.0825 4.1509 H 0 0

4.0735 -0.3478 -1.8991 H 0 0

4.8757 -1.9014 -2.3888 H 0 0

5.8186 -0.4378 -2.1151 H 0 0

6.1123 4.2230 5.2586 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

Page 17: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

17

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 16 1 0

7 27 1 0

7 35 1 0

8 36 1 0

8 37 1 0

8 38 1 0

10 39 1 0

11 40 1 0

11 41 1 0

11 42 1 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 21 1 0

16 17 1 0

17 18 2 0

17 22 1 0

18 23 1 0

19 43 1 0

21 44 1 0

21 45 1 0

21 46 1 0

23 47 1 0

23 48 1 0

23 49 1 0

24 25 2 0

24 29 1 0

24 30 1 0

25 26 1 0

25 31 1 0

26 27 2 0

26 32 1 0

27 28 1 0

28 29 2 0

28 33 1 0

29 34 1 0

30 50 1 0

M END

> <Name>

BAS-0511524

> <Absolute Energy>

68.45

> <Estimate>

0.490634

> <FitValue>

5.61231

Page 18: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

18

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

19

0

10

0

14

4

24

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

4.72806

> <s_m_entry_id>

8

> <s_m_entry_name>

BAS-0511524.1

$$$$

BAS0915895

SciTegic09220911323D

46 49 0 0 1 0 999 V2000

4.3617 1.6917 3.0192 C 0 0

4.8359 2.6541 2.1532 N 0 0

4.5061 2.6691 0.8160 C 0 0

4.9630 3.5257 0.0924 O 0 0

3.5311 0.7091 2.5992 C 0 0

3.0586 0.6558 1.1505 C 0 0 2 0 0 0

3.6596 1.7147 0.2953 N 0 0

1.5725 0.7136 1.0580 C 0 0

0.8611 -0.3512 0.4809 C 0 0

-0.5419 -0.2969 0.3955 C 0 0

-1.2364 0.8218 0.8853 C 0 0

-0.5221 1.8868 1.4629 C 0 0

0.8794 1.8326 1.5512 C 0 0

Page 19: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

19

-2.5492 0.8725 0.8057 O 0 0

3.5295 -2.1979 2.2708 C 0 0

3.7379 -1.4883 3.4836 O 0 0

3.0641 -0.3441 3.5214 C 0 0

4.8165 -2.3875 1.5854 C 0 0

4.9642 -2.0187 0.2298 C 0 0

6.1982 -2.1943 -0.4509 C 0 0

7.2871 -2.7444 0.2325 C 0 0

7.1406 -3.1140 1.5958 C 0 0

5.9159 -2.9416 2.2732 C 0 0

8.3303 -2.8145 -0.5968 O 0 0

7.9426 -2.3041 -1.8916 C 0 0

6.5604 -1.9249 -1.7048 O 0 0

2.1230 -0.1411 4.2554 O 0 0

4.7960 1.7554 4.4643 C 0 0

5.4514 3.3639 2.5048 H 0 0

3.3673 -0.3011 0.7293 H 0 0

3.4421 1.7399 -0.6820 H 0 0

1.3872 -1.2167 0.1001 H 0 0

-1.0823 -1.1189 -0.0491 H 0 0

-1.0486 2.7504 1.8426 H 0 0

1.4212 2.6562 1.9963 H 0 0

-3.0153 1.6482 1.1472 H 0 0

2.8656 -1.6071 1.6408 H 0 0

3.1001 -3.1701 2.5126 H 0 0

4.1285 -1.5929 -0.3062 H 0 0

7.9832 -3.5376 2.1224 H 0 0

5.8260 -3.2322 3.3104 H 0 0

8.0217 -3.0798 -2.6390 H 0 0

8.5382 -1.4407 -2.1484 H 0 0

4.4259 0.8818 4.9997 H 0 0

5.8837 1.8295 4.5220 H 0 0

4.3762 2.6408 4.9380 H 0 0

1 2 1 0

1 5 2 0

1 28 1 0

2 3 1 0

2 29 1 0

3 4 2 0

3 7 1 0

5 6 1 0

5 17 1 0

6 7 1 0

6 8 1 0

6 30 1 0

7 31 1 0

8 9 2 0

8 13 1 0

9 10 1 0

9 32 1 0

10 11 2 0

10 33 1 0

11 12 1 0

11 14 1 0

12 13 2 0

12 34 1 0

13 35 1 0

14 36 1 0

Page 20: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

20

15 16 1 0

15 18 1 0

15 37 1 0

15 38 1 0

16 17 1 0

17 27 2 0

18 19 2 0

18 23 1 0

19 20 1 0

19 39 1 0

20 21 2 0

20 26 1 0

21 22 1 0

21 24 1 0

22 23 2 0

22 40 1 0

23 41 1 0

24 25 1 0

25 26 1 0

25 42 1 0

25 43 1 0

28 44 1 0

28 45 1 0

28 46 1 0

M END

> <Name>

BAS0915895

> <Absolute Energy>

111.838

> <Estimate>

0.07908715

> <FitValue>

7.03056

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

24

0

14

0

22

Page 21: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

21

10

28

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

31.7715

> <s_m_entry_id>

9

> <s_m_entry_name>

BAS-0915895.1

$$$$

BAS-1247250

SciTegic09220911323D

35 37 0 0 0 0 999 V2000

0.6405 0.9615 2.8877 C 0 0

0.6260 -0.2481 2.1681 C 0 0

-0.3404 -0.4576 1.1682 C 0 0

-1.2931 0.5349 0.8822 C 0 0

-1.2765 1.7443 1.6037 C 0 0

-0.3118 1.9585 2.6047 C 0 0

1.5818 1.1671 3.8623 N 0 0

1.3499 -1.0257 2.3710 H 0 0

-0.3486 -1.3875 0.6183 H 0 0

-2.1971 0.3383 -0.0540 O 0 0

-2.0043 2.5105 1.3896 H 0 0

-0.3167 2.8930 3.1461 H 0 0

2.9903 0.8399 3.6056 C 0 0

3.4263 -0.0514 2.6598 N 0 0

4.7939 -0.1502 2.6545 C 0 0

5.4408 0.6611 3.5935 C 0 0

4.2881 1.5336 4.4643 S 0 0

5.6780 -0.9812 1.8051 C 0 0

7.0477 -1.0852 2.1058 C 0 0

7.8870 -1.8737 1.2998 C 0 0

7.3599 -2.5623 0.1923 C 0 0

5.9897 -2.4568 -0.1061 C 0 0

5.1483 -1.6672 0.6978 C 0 0

8.1472 -3.3024 -0.5633 O 0 0

7.7130 -3.6084 -1.8800 C 0 0

1.3077 1.5422 4.7489 H 0 0

-2.8462 1.0279 -0.2395 H 0 0

6.5062 0.7418 3.7628 H 0 0

7.4619 -0.5595 2.9532 H 0 0

8.9380 -1.9504 1.5341 H 0 0

5.5786 -2.9825 -0.9548 H 0 0

4.0983 -1.5927 0.4617 H 0 0

6.6944 -3.9980 -1.8219 H 0 0

7.8560 -2.7240 -2.4996 H 0 0

8.3497 -4.3982 -2.2748 H 0 0

Page 22: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

22

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 26 1 0

10 27 1 0

13 14 2 0

13 17 1 0

14 15 1 0

15 16 2 0

15 18 1 0

16 17 1 0

16 28 1 0

18 19 2 0

18 23 1 0

19 20 1 0

19 29 1 0

20 21 2 0

20 30 1 0

21 22 1 0

21 24 1 0

22 23 2 0

22 31 1 0

23 32 1 0

24 25 1 0

25 33 1 0

25 34 1 0

25 35 1 0

M END

> <Name>

BAS-1247250

> <Absolute Energy>

62.686

> <Estimate>

0.506422

> <FitValue>

5.54368

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

Page 23: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

23

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

24

0

10

0

22

3

17

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

13.0346

> <s_m_entry_id>

10

> <s_m_entry_name>

BAS-1247250.1

$$$$

BAS-1579754

SciTegic09220911323D

49 51 0 0 1 0 999 V2000

1.7438 2.6952 4.7901 O 0 5

1.8152 1.4782 4.6243 N 0 3

2.8119 0.9915 3.6444 C 0 0 2 0 0 0

2.2480 -0.2516 2.9196 C 0 0 2 0 0 0

3.2563 -0.8128 2.0064 N 0 0

4.5242 -1.1652 2.6644 C 0 0 2 0 0 0

5.1167 0.0649 3.3919 C 0 0 1 0 0 0

4.1255 0.6901 4.3917 C 0 0

0.9985 0.0745 2.1849 C 0 0

-0.2274 -0.4755 2.6023 C 0 0

-1.4078 -0.1657 1.9061 C 0 0

-1.3698 0.6937 0.7928 C 0 0

-0.1435 1.2425 0.3788 C 0 0

1.0390 0.9331 1.0731 C 0 0

-2.4792 0.9826 0.1411 O 0 0

5.4905 -1.7235 1.6824 C 0 0

6.0318 -3.0047 1.8783 C 0 0

6.9452 -3.5316 0.9471 C 0 0

7.3175 -2.7808 -0.1807 C 0 0

6.7713 -1.4985 -0.3751 C 0 0

5.8598 -0.9693 0.5545 C 0 0

8.1730 -3.2754 -1.0535 O 0 0

Page 24: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

24

7.2551 0.4662 4.1777 O 0 5

6.3313 -0.3443 4.1301 N 0 3

6.3250 -1.4465 4.6311 O 0 0

4.7113 1.9895 4.9589 C 0 0

3.8653 -0.2737 5.5582 C 0 0

1.1464 0.6437 5.1888 O 0 0

2.9919 1.7844 2.9146 H 0 0

1.9927 -1.0099 3.6606 H 0 0

2.8664 -1.6594 1.5605 H 0 0

4.3261 -1.9499 3.3982 H 0 0

5.3999 0.8178 2.6560 H 0 0

-0.2644 -1.1366 3.4545 H 0 0

-2.3459 -0.5900 2.2292 H 0 0

-0.1066 1.9029 -0.4757 H 0 0

1.9786 1.3599 0.7471 H 0 0

-2.4390 1.5750 -0.6203 H 0 0

5.7528 -3.5892 2.7430 H 0 0

7.3605 -4.5165 1.1034 H 0 0

7.0548 -0.9165 -1.2400 H 0 0

5.4458 0.0166 0.3966 H 0 0

8.4209 -2.7476 -1.8238 H 0 0

5.6622 1.8221 5.4610 H 0 0

4.0261 2.4392 5.6796 H 0 0

4.8779 2.7162 4.1628 H 0 0

4.7896 -0.4946 6.0888 H 0 0

3.1453 0.1531 6.2568 H 0 0

3.4555 -1.2168 5.1941 H 0 0

1 2 1 0

2 3 1 0

2 28 2 0

3 4 1 0

3 8 1 0

3 29 1 0

4 5 1 0

4 9 1 0

4 30 1 0

5 6 1 0

5 31 1 0

6 7 1 0

6 16 1 0

6 32 1 0

7 8 1 0

7 24 1 0

7 33 1 0

8 26 1 0

8 27 1 0

9 10 2 0

9 14 1 0

10 11 1 0

10 34 1 0

11 12 2 0

11 35 1 0

12 13 1 0

12 15 1 0

13 14 2 0

13 36 1 0

14 37 1 0

15 38 1 0

Page 25: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

25

16 17 2 0

16 21 1 0

17 18 1 0

17 39 1 0

18 19 2 0

18 40 1 0

19 20 1 0

19 22 1 0

20 21 2 0

20 41 1 0

21 42 1 0

22 43 1 0

23 24 1 0

24 25 2 0

26 44 1 0

26 45 1 0

26 46 1 0

27 47 1 0

27 48 1 0

27 49 1 0

M CHG 4 1 -1 2 1 23 -1 24 1

M END

> <Name>

BAS-1579754

> <Absolute Energy>

30.3974

> <Estimate>

0.0107041

> <FitValue>

6.6739

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

22

0

15

0

17

13

26

Page 26: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

26

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

0.000411716

> <s_m_entry_id>

11

> <s_m_entry_name>

BAS-1579754.1

$$$$

BAS-1813090

SciTegic09220911323D

34 36 0 0 0 0 999 V2000

-0.0190 0.7276 2.7145 C 0 0

-1.1638 1.2999 2.1357 C 0 0

-1.6294 0.8478 0.8894 C 0 0

-0.9418 -0.1833 0.2219 C 0 0

0.2032 -0.7588 0.7967 C 0 0

0.6667 -0.3037 2.0457 C 0 0

0.3229 1.0888 3.6733 H 0 0

-1.6884 2.0916 2.6515 H 0 0

-2.7033 1.3854 0.3449 O 0 0

-1.2947 -0.5353 -0.7373 H 0 0

0.7168 -1.5489 0.2697 H 0 0

4.1455 -2.0474 3.8046 C 0 0

3.0281 -1.7500 4.6016 C 0 0

1.8824 -1.1761 4.0230 C 0 0

1.8540 -0.8979 2.6442 C 0 0

2.9750 -1.1953 1.8442 C 0 0

4.1228 -1.7712 2.4263 C 0 0

5.0192 -2.4890 4.2669 H 0 0

3.0485 -1.9626 5.6614 H 0 0

1.0307 -0.9548 4.6510 H 0 0

2.9545 -0.9823 0.7853 H 0 0

7.5263 -2.6759 0.0030 C 0 0

6.8277 -1.4696 -0.1837 C 0 0

5.7074 -1.1718 0.6128 C 0 0

5.2808 -2.0787 1.6015 C 0 0

5.9801 -3.2879 1.7875 C 0 0

7.0987 -3.5832 0.9906 C 0 0

8.5745 -2.9540 -0.7434 O 0 0

7.1514 -0.7689 -0.9389 H 0 0

5.1833 -0.2383 0.4559 H 0 0

5.6672 -3.9961 2.5399 H 0 0

7.6318 -4.5104 1.1371 H 0 0

-3.0115 1.0652 -0.5102 H 0 0

9.0466 -3.7857 -0.6046 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

Page 27: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

27

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 15 1 0

9 33 1 0

12 13 2 0

12 17 1 0

12 18 1 0

13 14 1 0

13 19 1 0

14 15 2 0

14 20 1 0

15 16 1 0

16 17 2 0

16 21 1 0

17 25 1 0

22 23 2 0

22 27 1 0

22 28 1 0

23 24 1 0

23 29 1 0

24 25 2 0

24 30 1 0

25 26 1 0

26 27 2 0

26 31 1 0

27 32 1 0

28 34 1 0

M END

> <Name>

BAS-1813090

> <Absolute Energy>

51.1212

> <Estimate>

1.023377

> <FitValue>

5.52029

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

Page 28: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

28

1

> <MappedAtoms>

28

0

9

0

25

5

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

0.213574

> <s_m_entry_id>

12

> <s_m_entry_name>

BAS-1813090.1

$$$$

BAS-1832998

SciTegic09220911323D

47 49 0 0 0 0 999 V2000

4.1933 1.4786 4.1972 C 0 0

3.2302 0.7680 3.2791 C 0 0

3.5707 -0.4470 2.7944 C 0 0

2.6470 -1.1711 1.8915 C 0 0

2.9995 -2.2554 1.4869 O 0 0

3.6276 2.6825 4.5337 F 0 0

4.4093 0.7428 5.3310 F 0 0

5.3888 1.6984 3.5603 F 0 0

2.0570 1.3581 2.9685 O 0 0

1.1321 0.8030 2.1541 C 0 0

1.3698 -0.4728 1.5791 C 0 0

0.4097 -1.0648 0.7254 C 0 0

-0.7962 -0.3786 0.4462 C 0 0

-1.0411 0.8937 1.0180 C 0 0

-0.0772 1.4849 1.8730 C 0 0

-1.1882 4.0098 4.3454 C 0 0

-1.0067 2.6974 3.7496 N 0 0

-0.3309 2.8085 2.4674 C 0 0

-0.2577 1.8321 4.6450 C 0 0

-2.1868 1.5314 0.7445 O 0 0

4.7374 -1.0036 3.1225 O 0 0

5.5243 -1.4518 2.1659 C 0 0

6.2423 -2.6482 2.3417 C 0 0

7.0810 -3.1262 1.3208 C 0 0

7.2058 -2.4103 0.1144 C 0 0

6.4887 -1.2138 -0.0611 C 0 0

5.6500 -0.7358 0.9598 C 0 0

Page 29: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

29

7.5542 -2.7203 -2.1853 C 0 0

7.9935 -2.8575 -0.8416 O 0 0

0.5852 -2.0361 0.2831 H 0 0

-1.5303 -0.8283 -0.2050 H 0 0

-1.7426 4.7121 3.7223 H 0 0

-1.7189 3.9104 5.2909 H 0 0

-0.2122 4.4501 4.5563 H 0 0

0.6126 3.3357 2.5980 H 0 0

-0.9419 3.4033 1.7871 H 0 0

-0.1620 0.8039 4.2978 H 0 0

0.7453 2.2313 4.7834 H 0 0

-0.7452 1.8093 5.6201 H 0 0

-2.3565 2.3910 1.1491 H 0 0

6.1497 -3.2012 3.2642 H 0 0

7.6290 -4.0455 1.4616 H 0 0

6.5813 -0.6609 -0.9836 H 0 0

5.1020 0.1835 0.8190 H 0 0

8.3119 -3.1558 -2.8377 H 0 0

7.3155 -1.6708 -2.3597 H 0 0

6.6383 -3.2946 -2.3065 H 0 0

1 2 1 0

1 6 1 0

1 7 1 0

1 8 1 0

2 3 2 0

2 9 1 0

3 4 1 0

3 21 1 0

4 5 2 0

4 11 1 0

9 10 1 0

10 11 2 0

10 15 1 0

11 12 1 0

12 13 2 0

12 30 1 0

13 14 1 0

13 31 1 0

14 15 2 0

14 20 1 0

15 18 1 0

16 17 1 0

16 32 1 0

16 33 1 0

16 34 1 0

17 18 1 0

17 19 1 0

18 35 1 0

18 36 1 0

19 37 1 0

19 38 1 0

19 39 1 0

20 40 1 0

21 22 1 0

22 23 2 0

22 27 1 0

23 24 1 0

23 41 1 0

Page 30: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

30

24 25 2 0

24 42 1 0

25 26 1 0

25 29 1 0

26 27 2 0

26 43 1 0

27 44 1 0

28 29 1 0

28 45 1 0

28 46 1 0

28 47 1 0

M END

> <Name>

BAS-1832998

> <Absolute Energy>

61.5235

> <Estimate>

0.0320333

> <FitValue>

6.83043

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

29

0

20

0

24

14

8

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

6.80483

> <s_m_entry_id>

Page 31: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

31

13

> <s_m_entry_name>

BAS-1832998.1

$$$$

BAS-2170314

SciTegic09220911323D

54 56 0 0 1 0 999 V2000

3.4945 1.0456 4.7643 C 0 0

2.9404 1.0587 6.0256 N 0 0

1.7972 0.3547 6.3344 C 0 0

1.3570 0.3842 7.4609 O 0 0

2.9372 0.3402 3.7517 C 0 0

1.6426 -0.4371 3.9666 C 0 0 1 0 0 0

1.1499 -0.3859 5.3684 N 0 0

0.5734 0.0186 3.0352 C 0 0

-0.2134 1.1366 3.3611 C 0 0

-1.2254 1.5703 2.4865 C 0 0

-1.4519 0.8824 1.2795 C 0 0

-0.6649 -0.2372 0.9551 C 0 0

0.3465 -0.6695 1.8313 C 0 0

-2.3971 1.2816 0.4535 O 0 0

-2.3721 4.7071 3.9279 C 0 0

-1.5436 3.4228 3.8927 C 0 0

-1.9604 2.6199 2.7992 O 0 0

3.7444 -1.9510 2.0399 C 0 0

3.1854 -0.7100 1.6333 O 0 0

3.5636 0.2966 2.4156 C 0 0

5.0108 -2.1889 1.3029 C 0 0

6.1414 -2.6726 1.9833 C 0 0

7.3404 -2.8961 1.2849 C 0 0

7.4134 -2.6400 -0.0966 C 0 0

6.2789 -2.1554 -0.7751 C 0 0

5.0807 -1.9308 -0.0793 C 0 0

8.6303 -2.3762 -2.0875 C 0 0

8.5370 -2.8492 -0.7507 O 0 0

4.3667 1.1380 2.0865 O 0 0

4.7582 1.8406 4.5320 C 0 0

3.3868 1.5926 6.7467 H 0 0

1.8388 -1.4853 3.7380 H 0 0

0.3260 -0.8991 5.6187 H 0 0

-0.0436 1.6669 4.2865 H 0 0

-0.8347 -0.7675 0.0297 H 0 0

0.9486 -1.5296 1.5725 H 0 0

-2.9326 2.0510 0.6842 H 0 0

-3.4060 4.4917 4.2030 H 0 0

-1.9541 5.4160 4.6442 H 0 0

-2.3802 5.1875 2.9496 H 0 0

-1.6837 2.8480 4.8106 H 0 0

-0.4858 3.6503 3.7682 H 0 0

3.0316 -2.7405 1.8016 H 0 0

3.9495 -1.8970 3.1093 H 0 0

6.0940 -2.8714 3.0436 H 0 0

8.2071 -3.2683 1.8099 H 0 0

6.3295 -1.9560 -1.8361 H 0 0

4.2151 -1.5582 -0.6076 H 0 0

Page 32: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

32

7.8831 -2.7455 -2.7899 H 0 0

9.6145 -2.6400 -2.4758 H 0 0

8.5598 -1.2890 -2.0704 H 0 0

4.9819 2.5461 5.3310 H 0 0

4.6760 2.4047 3.6022 H 0 0

5.6080 1.1661 4.4364 H 0 0

1 2 1 0

1 5 2 0

1 30 1 0

2 3 1 0

2 31 1 0

3 4 2 0

3 7 1 0

5 6 1 0

5 20 1 0

6 7 1 0

6 8 1 0

6 32 1 0

7 33 1 0

8 9 2 0

8 13 1 0

9 10 1 0

9 34 1 0

10 11 2 0

10 17 1 0

11 12 1 0

11 14 1 0

12 13 2 0

12 35 1 0

13 36 1 0

14 37 1 0

15 16 1 0

15 38 1 0

15 39 1 0

15 40 1 0

16 17 1 0

16 41 1 0

16 42 1 0

18 19 1 0

18 21 1 0

18 43 1 0

18 44 1 0

19 20 1 0

20 29 2 0

21 22 2 0

21 26 1 0

22 23 1 0

22 45 1 0

23 24 2 0

23 46 1 0

24 25 1 0

24 28 1 0

25 26 2 0

25 47 1 0

26 48 1 0

27 28 1 0

27 49 1 0

27 50 1 0

Page 33: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

33

27 51 1 0

30 52 1 0

30 53 1 0

30 54 1 0

M END

> <Name>

BAS-2170314

> <Absolute Energy>

68.2478

> <Estimate>

0.0660149

> <FitValue>

6.95028

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

28

0

14

0

22

12

30

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

17.2397

> <s_m_entry_id>

14

> <s_m_entry_name>

BAS-2170314.1

$$$$

BAS2377597

Page 34: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

34

SciTegic09220911323D

36 37 0 0 0 0 999 V2000

5.7405 -3.1809 1.1384 C 0 0

5.1769 -1.8977 1.0394 C 0 0

5.9646 -0.8498 0.5309 C 0 0

7.2915 -1.1130 0.1323 C 0 0

7.8283 -2.3643 0.2331 N 0 0

7.0713 -3.3882 0.7270 C 0 0

5.1557 -4.0035 1.5257 H 0 0

4.1551 -1.7253 1.3507 H 0 0

5.4005 0.5279 0.4094 C 0 0

7.9032 -0.3154 -0.2601 H 0 0

7.5025 -4.3755 0.8025 H 0 0

6.0740 1.4415 -0.0047 O 0 0

4.0054 0.7542 0.8048 C 0 0

3.7125 1.4408 1.9211 C 0 0

4.8450 1.9708 2.7554 C 0 0

4.6833 1.6365 4.2391 C 0 0

2.4071 1.6429 2.2758 N 0 0

1.4158 0.9113 1.6826 C 0 0

1.6679 -0.4085 1.2588 C 0 0

0.6475 -1.1600 0.6500 C 0 0

-0.6246 -0.5943 0.4637 C 0 0

-0.8840 0.7211 0.8848 C 0 0

0.1384 1.4726 1.4941 C 0 0

-2.0781 1.2474 0.7082 O 0 0

3.2633 0.3358 0.1405 H 0 0

5.7831 1.5107 2.4452 H 0 0

4.9391 3.0473 2.6125 H 0 0

5.5917 1.8826 4.7912 H 0 0

3.8467 2.1852 4.6684 H 0 0

4.4908 0.5725 4.3761 H 0 0

2.1797 2.3258 2.9692 H 0 0

2.6416 -0.8583 1.3951 H 0 0

0.8411 -2.1701 0.3252 H 0 0

-1.4061 -1.1742 -0.0040 H 0 0

-0.0725 2.4846 1.8134 H 0 0

-2.7703 0.7215 0.2886 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

6 11 1 0

9 12 2 0

9 13 1 0

13 14 2 0

13 25 1 0

14 15 1 0

14 17 1 0

15 16 1 0

15 26 1 0

Page 35: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

35

15 27 1 0

16 28 1 0

16 29 1 0

16 30 1 0

17 18 1 0

17 31 1 0

18 19 2 0

18 23 1 0

19 20 1 0

19 32 1 0

20 21 2 0

20 33 1 0

21 22 1 0

21 34 1 0

22 23 2 0

22 24 1 0

23 35 1 0

24 36 1 0

M END

> <Name>

BAS2377597

> <Absolute Energy>

81.0353

> <Estimate>

3.620127

> <FitValue>

5.95036

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

5

0

24

0

1

22

16

> <MappingID>

1

Page 36: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

36

> <Pharmprint>

'11111'

> <Relative Energy>

28.1414

> <s_m_entry_id>

1

> <s_m_entry_name>

BAS2377597

$$$$

BAS-3353570

SciTegic09220911323D

53 55 0 0 1 0 999 V2000

1.7361 -0.3470 6.9726 O 0 0

2.1528 -0.3099 5.8386 C 0 0

3.4893 -0.0447 5.6196 N 0 0

4.0763 0.0071 4.2561 C 0 0 1 0 0 0

2.9961 0.3764 3.2042 C 0 0 2 0 0 0

1.7238 -0.4963 3.3699 C 0 0 1 0 0 0

1.2853 -0.5333 4.7905 N 0 0

0.6145 -0.0384 2.4827 C 0 0

0.0039 1.2097 2.7003 C 0 0

-1.0421 1.6429 1.8683 C 0 0

-1.4809 0.8227 0.8103 C 0 0

-0.8704 -0.4254 0.5927 C 0 0

0.1758 -0.8558 1.4271 C 0 0

-2.4614 1.2195 0.0241 O 0 0

-2.2320 4.7041 3.4354 C 0 0

-1.3215 3.4828 3.2971 C 0 0

-1.6093 2.8129 2.0786 O 0 0

3.5357 0.3358 1.7885 C 0 0

4.5814 -0.6767 1.4611 C 0 0

4.2523 -2.0435 1.4173 C 0 0

5.2399 -2.9942 1.1100 C 0 0

6.5586 -2.5863 0.8446 C 0 0

6.8850 -1.2189 0.8893 C 0 0

5.9011 -0.2663 1.1971 C 0 0

8.8329 -3.0444 0.4856 C 0 0

7.4833 -3.4798 0.5556 O 0 0

3.1271 1.1023 0.9477 O 0 0

5.2547 0.9899 4.2286 C 0 0

5.6722 1.2295 5.5117 F 0 0

4.8537 2.1668 3.6509 F 0 0

6.2869 0.4528 3.5044 F 0 0

4.6099 -1.2722 3.9634 O 0 0

4.0840 0.1147 6.4076 H 0 0

2.7111 1.4144 3.3932 H 0 0

1.9587 -1.5223 3.0819 H 0 0

0.3251 -0.7283 5.0055 H 0 0

0.3391 1.8401 3.5126 H 0 0

-1.2043 -1.0574 -0.2173 H 0 0

0.6401 -1.8166 1.2532 H 0 0

-2.8741 2.0779 0.1813 H 0 0

-2.0353 5.2274 4.3696 H 0 0

Page 37: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

37

-2.0841 5.3914 2.6023 H 0 0

-3.2809 4.4034 3.4361 H 0 0

-1.4876 2.7850 4.1181 H 0 0

-0.2752 3.7833 3.2842 H 0 0

3.2423 -2.3692 1.6187 H 0 0

4.9817 -4.0423 1.0769 H 0 0

7.8963 -0.8987 0.6862 H 0 0

6.1637 0.7825 1.2292 H 0 0

9.5902 -3.8154 0.3524 H 0 0

9.0665 -2.5043 1.4033 H 0 0

8.9215 -2.3419 -0.3452 H 0 0

3.8742 -1.9010 3.9849 H 0 0

1 2 2 0

2 3 1 0

2 7 1 0

3 4 1 0

3 33 1 0

4 5 1 0

4 28 1 0

4 32 1 0

5 6 1 0

5 18 1 0

5 34 1 0

6 7 1 0

6 8 1 0

6 35 1 0

7 36 1 0

8 9 2 0

8 13 1 0

9 10 1 0

9 37 1 0

10 11 2 0

10 17 1 0

11 12 1 0

11 14 1 0

12 13 2 0

12 38 1 0

13 39 1 0

14 40 1 0

15 16 1 0

15 41 1 0

15 42 1 0

15 43 1 0

16 17 1 0

16 44 1 0

16 45 1 0

18 19 1 0

18 27 2 0

19 20 2 0

19 24 1 0

20 21 1 0

20 46 1 0

21 22 2 0

21 47 1 0

22 23 1 0

22 26 1 0

23 24 2 0

23 48 1 0

Page 38: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

38

24 49 1 0

25 26 1 0

25 50 1 0

25 51 1 0

25 52 1 0

28 29 1 0

28 30 1 0

28 31 1 0

32 53 1 0

M END

> <Name>

BAS-3353570

> <Absolute Energy>

92.2127

> <Estimate>

0.06205763

> <FitValue>

5.12379

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

14

0

22

12

30

> <MappingID>

1

> <Pharmprint>

'01111'

> <Relative Energy>

32.7421

> <s_m_entry_id>

15

> <s_m_entry_name>

Page 39: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

39

BAS-3353570.1

$$$$

BAS3755311

SciTegic09220911323D

54 56 0 0 0 0 999 V2000

-0.9981 0.8298 0.8443 C 0 0

-0.4450 -0.4115 1.2111 C 0 0

0.9517 -0.5709 1.2671 C 0 0

1.7997 0.5105 0.9575 C 0 0

1.2444 1.7522 0.5906 C 0 0

-0.1521 1.9104 0.5339 C 0 0

-2.3589 0.9848 0.7895 N 0 0

-1.0796 -1.2515 1.4538 H 0 0

1.3589 -1.5320 1.5518 H 0 0

3.1586 0.3549 1.0124 N 0 0

1.8802 2.5915 0.3480 H 0 0

-0.5592 2.8715 0.2491 H 0 0

3.6997 -0.5772 1.8252 C 0 0

-2.9627 1.9777 1.5106 C 0 0

-4.4589 2.1217 1.4287 C 0 0

-2.3025 2.7208 2.1978 O 0 0

4.8224 -1.3824 1.4258 C 0 0

5.3483 -2.3579 2.3412 C 0 0

4.7901 -2.5265 3.5912 N 0 0

3.7152 -1.7643 3.9822 C 0 0

3.1525 -0.7880 3.1281 C 0 0

1.9930 0.0022 3.6123 C 0 0

0.8727 -0.3724 3.8675 O 0 0

2.3956 1.2643 3.7270 O 0 0

3.2840 1.4496 4.8210 C 0 0

4.7202 1.5209 4.3035 C 0 0

5.4350 -1.2395 0.1432 C 0 0

6.5363 -2.0467 -0.2179 C 0 0

7.0475 -3.0040 0.6869 C 0 0

6.4563 -3.1570 1.9593 C 0 0

7.1615 -1.8899 -1.5476 C 0 0

6.6386 -1.5893 -2.5968 O 0 0

8.4582 -2.1401 -1.4096 O 0 0

9.2421 -1.4922 -2.4026 C 0 0

10.7259 -1.6646 -2.0727 C 0 0

-2.9058 0.3709 0.2208 H 0 0

3.7504 0.9309 0.4503 H 0 0

-4.9301 1.3890 0.7742 H 0 0

-4.7146 3.1130 1.0580 H 0 0

-4.8955 2.0140 2.4205 H 0 0

3.2997 -1.9218 4.9689 H 0 0

3.1619 0.6132 5.5064 H 0 0

3.0117 2.3759 5.3275 H 0 0

4.7679 1.4156 3.2195 H 0 0

5.3272 0.7286 4.7417 H 0 0

5.1795 2.4750 4.5646 H 0 0

5.0696 -0.5185 -0.5739 H 0 0

7.8921 -3.6221 0.4131 H 0 0

6.8643 -3.8951 2.6359 H 0 0

9.0083 -1.9393 -3.3681 H 0 0

8.9708 -0.4371 -2.4152 H 0 0

Page 40: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

40

11.3453 -1.1823 -2.8267 H 0 0

10.9548 -1.2390 -1.0951 H 0 0

10.9941 -2.7208 -2.0449 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 14 1 0

7 36 1 0

10 13 1 0

10 37 1 0

13 17 2 0

13 21 1 0

14 15 1 0

14 16 2 0

15 38 1 0

15 39 1 0

15 40 1 0

17 18 1 0

17 27 1 0

18 19 2 0

18 30 1 0

19 20 1 0

20 21 2 0

20 41 1 0

21 22 1 0

22 23 2 0

22 24 1 0

24 25 1 0

25 26 1 0

25 42 1 0

25 43 1 0

26 44 1 0

26 45 1 0

26 46 1 0

27 28 2 0

27 47 1 0

28 29 1 0

28 31 1 0

29 30 2 0

29 48 1 0

30 49 1 0

31 32 2 0

31 33 1 0

33 34 1 0

34 35 1 0

34 50 1 0

34 51 1 0

35 52 1 0

35 53 1 0

Page 41: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

41

35 54 1 0

M END

> <Name>

BAS3755311

> <Absolute Energy>

141.868

> <Estimate>

0.0701925

> <FitValue>

6.46071

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

33

0

7

0

29

2

26

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

37.6458

> <s_m_entry_id>

16

> <s_m_entry_name>

BAS-3755311.1

$$$$

BAS-8770034

SciTegic09220911323D

41 43 0 0 0 0 999 V2000

Page 42: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

42

-2.9845 3.0183 1.9178 O 0 0

-3.4089 2.1534 1.1869 C 0 0

-2.5999 1.1235 0.7978 N 0 0

-1.3039 1.0670 1.2342 C 0 0

-0.9268 1.7363 2.4162 C 0 0

0.4036 1.6763 2.8623 C 0 0

1.3616 0.9506 2.1338 C 0 0

0.9873 0.2827 0.9553 C 0 0

-0.3430 0.3395 0.5048 C 0 0

2.7636 0.8895 2.6069 C 0 0

3.8449 0.2429 2.0610 N 0 0

4.9752 0.4352 2.8104 C 0 0

4.6708 1.4131 4.1719 S 0 0

3.0398 1.5914 3.7841 C 0 0

6.2967 -0.1234 2.4943 N 0 0

6.3956 -1.2536 1.7231 C 0 0

7.5096 -1.4381 0.8808 C 0 0

7.6110 -2.5960 0.0894 C 0 0

8.6552 -2.7700 -0.6983 O 0 0

8.5740 -2.2766 -2.0285 C 0 0

6.5996 -3.5690 0.1396 C 0 0

5.4859 -3.3870 0.9781 C 0 0

5.3825 -2.2298 1.7687 C 0 0

-4.8274 2.1870 0.6889 C 0 0

-2.9531 0.4087 0.1942 H 0 0

-1.6500 2.2986 2.9891 H 0 0

0.6877 2.1915 3.7703 H 0 0

1.7181 -0.2775 0.3902 H 0 0

-0.6131 -0.1805 -0.4029 H 0 0

2.3407 2.1686 4.3791 H 0 0

7.1230 0.3170 2.8398 H 0 0

8.2949 -0.6975 0.8351 H 0 0

9.5071 -2.5182 -2.5394 H 0 0

7.6623 -2.6664 -2.4813 H 0 0

8.4885 -1.1918 -1.9869 H 0 0

6.6749 -4.4600 -0.4677 H 0 0

4.7103 -4.1363 1.0148 H 0 0

4.5195 -2.1053 2.4087 H 0 0

-5.3957 3.0451 1.0520 H 0 0

-5.3514 1.2850 1.0028 H 0 0

-4.8380 2.2167 -0.4005 H 0 0

1 2 2 0

2 3 1 0

2 24 1 0

3 4 1 0

3 25 1 0

4 5 2 0

4 9 1 0

5 6 1 0

5 26 1 0

6 7 2 0

6 27 1 0

7 8 1 0

7 10 1 0

8 9 2 0

8 28 1 0

9 29 1 0

10 11 1 0

Page 43: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

43

10 14 2 0

11 12 2 0

12 13 1 0

12 15 1 0

13 14 1 0

14 30 1 0

15 16 1 0

15 31 1 0

16 17 2 0

16 23 1 0

17 18 1 0

17 32 1 0

18 19 1 0

18 21 2 0

19 20 1 0

20 33 1 0

20 34 1 0

20 35 1 0

21 22 1 0

21 36 1 0

22 23 2 0

22 37 1 0

23 38 1 0

24 39 1 0

24 40 1 0

24 41 1 0

M END

> <Name>

BAS-8770034

> <Absolute Energy>

83.0565

> <Estimate>

0.141895

> <FitValue>

6.07146

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

19

0

3

Page 44: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

44

0

23

9

13

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

23.5343

> <s_m_entry_id>

17

> <s_m_entry_name>

BAS-8770034.1

$$$$

cpd10

SciTegic09220911323D

30 32 0 0 0 0 999 V2000

5.9963 -0.6862 2.2221 C 0 0

5.1826 -1.4705 1.3853 C 0 0

5.7680 -2.3378 0.4450 C 0 0

7.1695 -2.4272 0.3418 C 0 0

7.9804 -1.6433 1.1809 C 0 0

7.3972 -0.7752 2.1183 C 0 0

4.1043 -1.4145 1.4488 H 0 0

5.1402 -2.9367 -0.1950 H 0 0

7.7169 -3.2404 -0.5386 O 0 0

9.0554 -1.7058 1.1041 H 0 0

8.0376 -0.1798 2.7556 H 0 0

4.2219 1.9540 5.0751 C 0 0

3.6867 0.6675 4.8763 C 0 0

4.2713 -0.2014 3.9373 C 0 0

5.3912 0.2144 3.1946 C 0 0

5.9264 1.5008 3.3934 C 0 0

5.3404 2.3685 4.3330 C 0 0

3.6061 2.8681 6.0636 C 0 0

2.8268 0.3434 5.4448 H 0 0

3.8475 -1.1854 3.7979 H 0 0

6.7859 1.8353 2.8305 H 0 0

5.7555 3.3542 4.4806 H 0 0

3.8776 4.1200 6.4685 N 0 0

2.9969 4.4869 7.4047 N 0 0

2.1160 3.4918 7.6500 C 0 0

2.4838 2.4253 6.7946 C 0 0

8.6793 -3.2924 -0.6011 H 0 0

2.9878 5.3693 7.8607 H 0 0

1.3060 3.5410 8.3649 H 0 0

1.9899 1.4645 6.7269 H 0 0

1 2 2 0

1 6 1 0

1 15 1 0

Page 45: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

45

2 3 1 0

2 7 1 0

3 4 2 0

3 8 1 0

4 5 1 0

4 9 1 0

5 6 2 0

5 10 1 0

6 11 1 0

9 27 1 0

12 13 2 0

12 17 1 0

12 18 1 0

13 14 1 0

13 19 1 0

14 15 2 0

14 20 1 0

15 16 1 0

16 17 2 0

16 21 1 0

17 22 1 0

18 23 2 0

18 26 1 0

23 24 1 0

24 25 1 0

24 28 1 0

25 26 2 0

25 29 1 0

26 30 1 0

M END

> <Name>

cpd10

> <Absolute Energy>

50.4773

> <Estimate>

3.88135

> <FitValue>

3.50001

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

Page 46: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

46

9

0

0

3

0

12

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

1.93993

> <s_m_entry_id>

7727

> <s_m_entry_name>

cpd10

$$$$

cpd11

SciTegic09220911323D

32 34 0 0 0 0 999 V2000

1.1539 0.3623 1.6435 C 0 0

0.6714 1.6698 1.4499 C 0 0

-0.6548 1.8739 1.0287 C 0 0

-1.5030 0.7752 0.7995 C 0 0

-1.0175 -0.5290 0.9939 C 0 0

0.3063 -0.7382 1.4145 C 0 0

1.3078 2.5255 1.6209 H 0 0

-1.0212 2.8797 0.8813 H 0 0

-2.7449 0.9691 0.4050 O 0 0

-1.6649 -1.3762 0.8193 H 0 0

0.6603 -1.7497 1.5583 H 0 0

5.1813 -0.2676 2.9250 C 0 0

4.6171 -1.0898 1.9325 C 0 0

3.2951 -0.8844 1.5105 C 0 0

2.5270 0.1480 2.0797 C 0 0

3.0870 0.9712 3.0739 C 0 0

4.4120 0.7641 3.4991 C 0 0

6.5922 -0.5044 3.3623 C 0 0

5.2006 -1.8850 1.4889 H 0 0

2.8794 -1.5246 0.7453 H 0 0

2.5038 1.7668 3.5198 H 0 0

4.9863 1.6479 4.5522 C 0 0

7.3364 -1.4122 2.8377 N 0 0

8.4286 -1.3848 3.3755 N 0 0

8.3697 -0.3698 4.3268 C 0 0

7.1798 0.2116 4.3294 O 0 0

9.3091 -0.0927 5.0351 O 0 0

-3.3172 0.2078 0.2510 H 0 0

4.2638 2.4198 4.8119 H 0 0

5.2843 1.0440 5.4085 H 0 0

5.8786 2.1405 4.1655 H 0 0

Page 47: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

47

9.1798 -1.9990 3.1367 H 0 0

1 2 2 0

1 6 1 0

1 15 1 0

2 3 1 0

2 7 1 0

3 4 2 0

3 8 1 0

4 5 1 0

4 9 1 0

5 6 2 0

5 10 1 0

6 11 1 0

9 28 1 0

12 13 2 0

12 17 1 0

12 18 1 0

13 14 1 0

13 19 1 0

14 15 2 0

14 20 1 0

15 16 1 0

16 17 2 0

16 21 1 0

17 22 1 0

18 23 2 0

18 26 1 0

22 29 1 0

22 30 1 0

22 31 1 0

23 24 1 0

24 25 1 0

24 32 1 0

25 26 1 0

25 27 2 0

M END

> <Name>

cpd11

> <Absolute Energy>

49.0962

> <Estimate>

6.81015

> <FitValue>

4.25401

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

Page 48: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

48

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

9

0

0

5

22

> <MappingID>

1

> <Pharmprint>

'01011'

> <Relative Energy>

-0.0141331

> <s_m_entry_id>

7721

> <s_m_entry_name>

cpd11

$$$$

cpd12

SciTegic09220911323D

41 41 0 0 1 0 999 V2000

2.1850 0.2375 2.8445 C 0 0 2 0 0 0

2.6873 -1.0282 2.1187 C 0 0

3.2600 -0.9131 0.7206 C 0 0

2.8964 -0.0331 -0.2341 C 0 0

1.8371 1.0351 -0.0963 C 0 0

2.3856 2.3728 0.4486 C 0 0 2 0 0 0

2.3417 2.4706 1.8680 O 0 0

3.0707 1.4986 2.6099 C 0 0 1 0 0 0

3.4773 2.2145 3.9042 C 0 0

4.7853 1.6820 4.4858 C 0 0

1.9952 -0.0853 4.3360 C 0 0

1.5687 3.5609 -0.0640 C 0 0

0.0689 3.3911 0.1704 C 0 0

-0.3227 3.6539 1.5994 C 0 0

-1.3672 2.9822 2.1119 C 0 0

-2.0939 2.0338 1.3124 C 0 0

1.1693 0.4300 2.4998 H 0 0

3.4659 -1.4799 2.7340 H 0 0

1.8820 -1.7614 2.0957 H 0 0

4.0449 -1.6066 0.4557 H 0 0

3.4092 -0.1028 -1.1809 H 0 0

0.9705 0.6718 0.4509 H 0 0

1.4564 1.2133 -1.1047 H 0 0

3.4207 2.5150 0.1339 H 0 0

3.9931 1.2600 2.0791 H 0 0

Page 49: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

49

3.5352 3.2919 3.7461 H 0 0

2.6759 2.1606 4.6417 H 0 0

5.0845 2.2649 5.3572 H 0 0

4.6796 0.6364 4.7795 H 0 0

5.5877 1.7429 3.7517 H 0 0

1.5033 0.7272 4.8673 H 0 0

2.9586 -0.2626 4.8163 H 0 0

1.3900 -0.9838 4.4603 H 0 0

1.7755 3.7443 -1.1204 H 0 0

1.9258 4.4925 0.3762 H 0 0

-0.1636 2.3601 -0.0937 H 0 0

-0.5012 4.0399 -0.4948 H 0 0

0.1612 4.3434 2.2763 H 0 0

-1.6432 3.1718 3.1384 H 0 0

-2.6931 1.2491 0.6505 C 0 0

-3.2268 0.5535 0.0617 H 0 0

1 2 1 0

1 8 1 0

1 11 1 0

1 17 1 0

2 3 1 0

2 18 1 0

2 19 1 0

3 4 2 0

3 20 1 0

4 5 1 0

4 21 1 0

5 6 1 0

5 22 1 0

5 23 1 0

6 7 1 0

6 12 1 0

6 24 1 0

7 8 1 0

8 9 1 0

8 25 1 0

9 10 1 0

9 26 1 0

9 27 1 0

10 28 1 0

10 29 1 0

10 30 1 0

11 31 1 0

11 32 1 0

11 33 1 0

12 13 1 0

12 34 1 0

12 35 1 0

13 14 1 0

13 36 1 0

13 37 1 0

14 15 2 0

14 38 1 0

15 16 1 0

15 39 1 0

16 40 3 0

40 41 1 0

M END

Page 50: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

50

> <Name>

cpd12

> <Absolute Energy>

37.1412

> <Estimate>

160.229

> <FitValue>

2.93929

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

40

0

0

0

10

> <MappingID>

1

> <Pharmprint>

'01001'

> <Relative Energy>

8.11908

> <s_m_entry_id>

7752

> <s_m_entry_name>

cpd12

$$$$

cpd13

SciTegic09220911323D

30 31 0 0 0 0 999 V2000

6.0409 -2.8556 0.6812 C 0 0

4.9835 -2.1440 1.2437 C 0 0

5.5475 -1.1209 2.0157 C 0 0

Page 51: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

51

6.9062 -1.1894 1.9380 N 0 0

7.2121 -2.2427 1.1302 C 0 0

4.7960 -0.1342 2.7790 C 0 0

3.3420 -0.0357 2.6002 C 0 0

2.8001 -0.0787 1.3716 C 0 0

-1.4786 0.2201 0.9898 C 0 0

-0.9177 -0.6359 1.9526 C 0 0

0.4792 -0.7335 2.0768 C 0 0

1.3175 0.0250 1.2384 C 0 0

0.7517 0.8815 0.2751 C 0 0

-0.6440 0.9785 0.1520 C 0 0

-2.9611 0.3239 0.8567 B 0 0

-1.5607 -1.2170 2.5946 H 0 0

0.9023 -1.3943 2.8200 H 0 0

1.3890 1.4676 -0.3724 H 0 0

-1.0769 1.6359 -0.5885 H 0 0

-3.5062 1.5472 0.6235 O 0 0

-3.7270 -0.7939 0.9689 O 0 0

5.3669 0.5936 3.5548 O 0 0

5.9678 -3.7143 0.0275 H 0 0

3.9312 -2.3445 1.1067 H 0 0

7.5583 -0.5892 2.3871 H 0 0

8.2289 -2.5290 0.8936 H 0 0

2.7700 0.0713 3.5091 H 0 0

3.5047 -0.1899 0.5595 H 0 0

-4.3998 1.4873 0.2516 H 0 0

-4.6509 -0.5887 1.1823 H 0 0

1 2 1 0

1 5 2 0

1 23 1 0

2 3 2 0

2 24 1 0

3 4 1 0

3 6 1 0

4 5 1 0

4 25 1 0

5 26 1 0

6 7 1 0

6 22 2 0

7 8 2 0

7 27 1 0

8 12 1 0

8 28 1 0

9 10 2 0

9 14 1 0

9 15 1 0

10 11 1 0

10 16 1 0

11 12 2 0

11 17 1 0

12 13 1 0

13 14 2 0

13 18 1 0

14 19 1 0

15 20 1 0

15 21 1 0

20 29 1 0

21 30 1 0

Page 52: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

52

M END

> <Name>

cpd13

> <Absolute Energy>

31.3791

> <Estimate>

12.069

> <FitValue>

4.14526

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

20

0

1

14

0

> <MappingID>

1

> <Pharmprint>

'01110'

> <Relative Energy>

1.49853

> <s_m_entry_id>

7726

> <s_m_entry_name>

cpd13

$$$$

cpd14

SciTegic09220911323D

57 59 0 0 0 0 999 V2000

4.3740 0.0163 3.5477 C 0 0

3.5528 1.1180 3.2449 C 0 0

Page 53: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

53

3.7492 2.3428 3.9066 C 0 0

4.7645 2.4683 4.8698 C 0 0

5.5843 1.3657 5.1720 C 0 0

5.3892 0.1408 4.5109 C 0 0

4.1670 -1.2867 2.8430 C 0 0

2.7710 1.0316 2.5053 H 0 0

3.1182 3.1885 3.6734 H 0 0

4.9148 3.4074 5.3785 H 0 0

6.3660 1.4622 5.9138 H 0 0

6.0249 -0.6993 4.7501 H 0 0

3.0534 -1.9892 3.1070 C 0 0

2.0680 -1.4317 4.0985 C 0 0

0.7452 -1.0324 3.4441 C 0 0

7.2309 -2.5260 0.0769 C 0 0

6.5857 -1.2859 -0.0892 C 0 0

5.5881 -0.8808 0.8135 C 0 0

5.2274 -1.7139 1.8857 C 0 0

5.8697 -2.9566 2.0538 C 0 0

6.8681 -3.3577 1.1519 C 0 0

8.1661 -2.9047 -0.7682 O 0 0

6.8602 -0.6426 -0.9113 H 0 0

5.1001 0.0742 0.6743 H 0 0

5.5987 -3.6043 2.8750 H 0 0

7.3586 -4.3103 1.2849 H 0 0

2.4544 -5.7430 1.0818 C 0 0

2.5782 -4.5554 0.3381 C 0 0

2.7733 -3.3304 0.9991 C 0 0

2.8461 -3.2911 2.4044 C 0 0

2.7224 -4.4807 3.1460 C 0 0

2.5269 -5.7057 2.4840 C 0 0

2.3051 -6.6832 0.5737 H 0 0

2.5229 -4.5837 -0.7389 H 0 0

2.8666 -2.4226 0.4208 H 0 0

2.7762 -4.4623 4.2244 H 0 0

2.4320 -6.6176 3.0532 H 0 0

7.9084 -2.7602 -2.1570 C 0 0

6.9661 -3.8709 -2.6193 C 0 0

5.6940 -3.7816 -1.9243 N 0 0

4.7883 -2.8911 -2.6347 C 0 0

5.0999 -5.0973 -1.7775 C 0 0

1.8192 -2.1913 4.8414 H 0 0

2.5106 -0.5860 4.6234 H 0 0

0.9171 -0.3485 2.6152 H 0 0

0.2172 -1.9134 3.0754 H 0 0

0.0968 -0.5306 4.1625 H 0 0

8.8594 -2.8154 -2.6893 H 0 0

7.4601 -1.7807 -2.3206 H 0 0

7.4089 -4.8509 -2.4398 H 0 0

6.7988 -3.8119 -3.6940 H 0 0

4.3637 -2.0982 -2.0192 H 0 0

3.9621 -3.4689 -3.0496 H 0 0

5.3185 -2.4207 -3.4631 H 0 0

5.6988 -5.7969 -1.1933 H 0 0

4.9397 -5.5381 -2.7610 H 0 0

4.1287 -5.0063 -1.2909 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

Page 54: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

54

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 19 1 0

13 14 1 0

13 30 1 0

14 15 1 0

14 43 1 0

14 44 1 0

15 45 1 0

15 46 1 0

15 47 1 0

16 17 2 0

16 21 1 0

16 22 1 0

17 18 1 0

17 23 1 0

18 19 2 0

18 24 1 0

19 20 1 0

20 21 2 0

20 25 1 0

21 26 1 0

22 38 1 0

27 28 2 0

27 32 1 0

27 33 1 0

28 29 1 0

28 34 1 0

29 30 2 0

29 35 1 0

30 31 1 0

31 32 2 0

31 36 1 0

32 37 1 0

38 39 1 0

38 48 1 0

38 49 1 0

39 40 1 0

39 50 1 0

39 51 1 0

40 41 1 0

40 42 1 0

41 52 1 0

41 53 1 0

41 54 1 0

42 55 1 0

42 56 1 0

42 57 1 0

M END

> <Name>

Page 55: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

55

cpd14

> <Absolute Energy>

98.8742

> <Estimate>

1.10997

> <FitValue>

4.34786

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

22

0

0

21

0

4

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

18.0083

> <s_m_entry_id>

7705

> <s_m_entry_name>

cpd14

$$$$

cpd15

SciTegic09220911323D

36 38 0 0 1 0 999 V2000

0.8105 -0.1249 2.2820 C 0 0

1.2678 0.5038 1.0931 C 0 0

0.3707 0.7025 0.0144 C 0 0

-0.9787 0.2904 0.1196 C 0 0

Page 56: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

56

-1.4413 -0.3303 1.3152 C 0 0

-0.5429 -0.5391 2.3996 C 0 0

1.6823 -0.3149 3.2999 O 0 0

2.7030 0.9224 1.0367 C 0 0 2 0 0 0

0.7226 1.1682 -0.8948 H 0 0

-2.1286 0.5875 -1.3505 Br 0 0

-2.8536 -0.7574 1.4276 C 0 0

-1.1226 -1.3632 3.9996 Br 0 0

3.6172 -0.2870 0.7994 C 0 0

3.7400 -0.9684 2.1663 C 0 0

3.0755 0.0083 3.1487 C 0 0 1 0 0 0

3.2330 1.3510 2.4205 C 0 0 2 0 0 0

2.4544 2.4913 3.0821 C 0 0

3.7488 -0.0194 4.5179 C 0 0

4.9976 1.4397 4.6127 Br 0 0

2.9874 2.0346 0.0232 C 0 0

-3.1063 -1.2218 2.3804 H 0 0

-3.0798 -1.4726 0.6375 H 0 0

-3.5058 0.1059 1.2919 H 0 0

3.2427 -0.9592 0.0383 H 0 0

4.5973 0.0370 0.4716 H 0 0

4.7826 -1.1273 2.4047 H 0 0

3.2536 -1.9336 2.1817 H 0 0

4.2757 1.6342 2.3664 H 0 0

2.5867 3.4197 2.5287 H 0 0

1.3907 2.2556 3.1290 H 0 0

2.8046 2.6564 4.1003 H 0 0

4.3126 -0.9428 4.6514 H 0 0

3.0142 0.1258 5.3107 H 0 0

2.3435 2.8999 0.1760 H 0 0

2.8301 1.6771 -0.9941 H 0 0

4.0215 2.3713 0.1006 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 15 1 0

8 13 1 0

8 16 1 0

8 20 1 0

11 21 1 0

11 22 1 0

11 23 1 0

13 14 1 0

13 24 1 0

13 25 1 0

14 15 1 0

14 26 1 0

14 27 1 0

15 16 1 0

Page 57: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

57

15 18 1 0

16 17 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 19 1 0

18 32 1 0

18 33 1 0

20 34 1 0

20 35 1 0

20 36 1 0

M END

> <Name>

cpd15

> <Absolute Energy>

58.0078

> <Estimate>

120.114

> <FitValue>

2.84499

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

0

0

4

19

> <MappingID>

1

> <Pharmprint>

'00011'

> <Relative Energy>

24.512

> <s_m_entry_id>

7743

Page 58: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

58

> <s_m_entry_name>

cpd15

$$$$

cpd16

SciTegic09220911323D

92 95 0 0 1 0 999 V2000

3.0910 0.4008 9.8157 C 0 0 1 0 0 0

2.7337 1.5149 8.7951 C 0 0

3.2151 1.1435 7.4988 O 0 0

4.6065 0.8313 7.3640 C 0 0 2 0 0 0

4.9925 -0.2826 8.3567 C 0 0

4.5876 0.0584 9.7927 C 0 0

2.5481 0.8481 11.6276 Br 0 0

3.3017 2.8929 9.1705 C 0 0

1.2155 1.6339 8.6247 C 0 0

5.4550 2.0943 7.5585 C 0 0

4.7770 0.3404 5.9245 C 0 0 2 0 0 0

6.1269 -0.0842 5.7836 O 0 0

6.4501 -0.6296 4.5066 C 0 0 1 0 0 0

6.1148 0.3686 3.3542 C 0 0 1 0 0 0

5.5304 1.6995 3.8598 C 0 0

4.4147 1.4253 4.8775 C 0 0

7.2681 0.6629 2.5662 O 0 0

7.9421 -0.4637 2.0125 C 0 0 1 0 0 0

8.3553 -1.4788 3.1116 C 0 0

7.9267 -1.0634 4.5243 C 0 0

7.0625 -1.0843 0.9211 C 0 0 1 0 0 0

7.9032 -1.6994 -0.0293 O 0 0

6.2490 -2.2773 1.4231 C 0 0

6.2016 -0.0479 0.1975 C 0 0

5.1839 -0.6834 -0.7515 C 0 0

4.3283 0.3545 -1.4794 C 0 0 1 0 0 0

3.0116 0.5386 -0.7363 C 0 0 1 0 0 0

2.1251 -0.5002 -1.0845 O 0 0

1.3015 -0.8513 0.0092 C 0 0 1 0 0 0

1.6834 0.1165 1.1268 C 0 0

3.1373 0.4259 0.7780 C 0 0

-0.1620 -0.7447 -0.4053 C 0 0

-0.3571 -1.4187 -1.7649 C 0 0

-1.0458 -1.3492 0.6852 C 0 0

-0.4945 0.6189 -0.5360 O 0 0

-1.8661 0.8346 -0.7776 C 0 0 1 0 0 0

-2.5214 1.1286 0.4344 O 0 0

-2.0036 2.0453 -1.7046 C 0 0

5.0198 1.5833 -1.4666 O 0 0

2.5295 -0.5014 9.5693 H 0 0

6.0638 -0.4751 8.3113 H 0 0

4.5064 -1.2152 8.0687 H 0 0

5.1816 0.9000 10.1515 H 0 0

4.8048 -0.7865 10.4472 H 0 0

4.2955 2.8151 9.6119 H 0 0

2.6553 3.3955 9.8891 H 0 0

3.3791 3.5311 8.2885 H 0 0

0.7612 0.6805 8.3504 H 0 0

0.9702 2.3560 7.8455 H 0 0

Page 59: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

59

0.7483 1.9706 9.5509 H 0 0

4.9129 2.9954 7.2709 H 0 0

6.3633 2.0462 6.9580 H 0 0

5.7498 2.2036 8.6020 H 0 0

4.1432 -0.5355 5.7768 H 0 0

5.8363 -1.5233 4.3810 H 0 0

5.3780 -0.0952 2.6963 H 0 0

6.3109 2.2894 4.3442 H 0 0

5.1534 2.3028 3.0333 H 0 0

4.1398 2.3615 5.3655 H 0 0

3.5224 1.1035 4.3397 H 0 0

8.8414 -0.0694 1.5393 H 0 0

7.9198 -2.4533 2.8901 H 0 0

9.4360 -1.6257 3.0898 H 0 0

8.5551 -0.2340 4.8536 H 0 0

8.0868 -1.8799 5.2275 H 0 0

7.3381 -2.2309 -0.6106 H 0 0

5.3372 -2.4220 0.8440 H 0 0

5.9624 -2.1374 2.4655 H 0 0

6.8347 -3.1957 1.3606 H 0 0

5.7031 0.6081 0.9123 H 0 0

6.8284 0.6692 -0.3337 H 0 0

5.6789 -1.3420 -1.4636 H 0 0

4.5543 -1.3945 -0.2177 H 0 0

4.1734 0.0651 -2.5192 H 0 0

2.5440 1.4771 -1.0061 H 0 0

1.5503 -1.8660 0.2849 H 0 0

1.5726 -0.3144 2.1124 H 0 0

1.0907 1.0211 1.0859 H 0 0

3.7857 -0.3915 1.0669 H 0 0

3.4967 1.3321 1.2405 H 0 0

-1.3892 -1.7370 -1.9142 H 0 0

0.2791 -2.2987 -1.8528 H 0 0

-0.0971 -0.7365 -2.5733 H 0 0

-2.0791 -1.4574 0.3589 H 0 0

-1.0399 -0.7227 1.5776 H 0 0

-0.6822 -2.3376 0.9728 H 0 0

-2.2894 -0.0871 -1.1779 H 0 0

-3.4703 1.1885 0.2376 H 0 0

-3.0530 2.2436 -1.9236 H 0 0

-1.5619 2.9314 -1.2477 H 0 0

-1.4928 1.8668 -2.6504 H 0 0

4.5905 2.1600 -2.1181 H 0 0

1 2 1 0

1 6 1 0

1 7 1 0

1 40 1 0

2 3 1 0

2 8 1 0

2 9 1 0

3 4 1 0

4 5 1 0

4 10 1 0

4 11 1 0

5 6 1 0

5 41 1 0

5 42 1 0

6 43 1 0

Page 60: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

60

6 44 1 0

8 45 1 0

8 46 1 0

8 47 1 0

9 48 1 0

9 49 1 0

9 50 1 0

10 51 1 0

10 52 1 0

10 53 1 0

11 12 1 0

11 16 1 0

11 54 1 0

12 13 1 0

13 14 1 0

13 20 1 0

13 55 1 0

14 15 1 0

14 17 1 0

14 56 1 0

15 16 1 0

15 57 1 0

15 58 1 0

16 59 1 0

16 60 1 0

17 18 1 0

18 19 1 0

18 21 1 0

18 61 1 0

19 20 1 0

19 62 1 0

19 63 1 0

20 64 1 0

20 65 1 0

21 22 1 0

21 23 1 0

21 24 1 0

22 66 1 0

23 67 1 0

23 68 1 0

23 69 1 0

24 25 1 0

24 70 1 0

24 71 1 0

25 26 1 0

25 72 1 0

25 73 1 0

26 27 1 0

26 39 1 0

26 74 1 0

27 28 1 0

27 31 1 0

27 75 1 0

28 29 1 0

29 30 1 0

29 32 1 0

29 76 1 0

30 31 1 0

Page 61: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

61

30 77 1 0

30 78 1 0

31 79 1 0

31 80 1 0

32 33 1 0

32 34 1 0

32 35 1 0

33 81 1 0

33 82 1 0

33 83 1 0

34 84 1 0

34 85 1 0

34 86 1 0

35 36 1 0

36 37 1 0

36 38 1 0

36 87 1 0

37 88 1 0

38 89 1 0

38 90 1 0

38 91 1 0

39 92 1 0

M END

> <Name>

cpd16

> <Absolute Energy>

109.463

> <Estimate>

24.02568

> <FitValue>

3.45879

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

22

0

37

0

0

0

16

Page 62: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

62

> <MappingID>

1

> <Pharmprint>

'11001'

> <Relative Energy>

25.7006

> <s_m_entry_id>

7716

> <s_m_entry_name>

cpd16

$$$$

cpd17

SciTegic09220911323D

39 40 0 0 1 0 999 V2000

2.8360 4.4510 2.0890 C 0 0 2 0 0 0

2.1570 3.7410 3.2790 C 0 0

2.6290 2.2900 3.4300 C 0 0

4.1430 2.2290 3.4190 C 0 0

4.8410 2.8320 2.1910 C 0 0 2 0 0 0

4.3920 4.3370 2.1290 C 0 0

4.9360 5.0840 3.3610 C 0 0

4.9830 5.0230 0.8840 C 0 0

4.3980 2.0760 0.9050 C 0 0

4.9430 0.6730 0.7840 C 0 0

6.3960 2.7350 2.2290 C 0 0

6.9750 1.3070 2.1040 C 0 0

6.1300 0.3290 1.3190 C 0 0

4.7870 1.6910 4.4760 C 0 0

2.2050 6.2930 2.0190 Br 0 0

6.6580 -1.0720 1.1520 C 0 0

2.4640 4.0110 1.1640 H 0 0

1.0720 3.7550 3.1670 H 0 0

2.3750 4.2740 4.2070 H 0 0

2.2270 1.6710 2.6290 H 0 0

2.2270 1.8750 4.3560 H 0 0

4.6030 4.6270 4.2930 H 0 0

4.6030 6.1220 3.3610 H 0 0

6.0260 5.0840 3.3610 H 0 0

4.6320 4.5620 -0.0390 H 0 0

6.0710 4.9660 0.8930 H 0 0

4.7050 6.0770 0.8570 H 0 0

3.3150 2.0320 0.8100 H 0 0

4.7340 2.6230 0.0240 H 0 0

4.3630 -0.0680 0.2540 H 0 0

6.7990 3.3080 1.3940 H 0 0

6.8020 3.2160 3.1200 H 0 0

7.1570 0.8810 3.0890 H 0 0

7.9620 1.3680 1.6430 H 0 0

4.2070 1.2800 5.2890 H 0 0

5.8610 1.6630 4.5390 H 0 0

6.3070 -1.4910 0.2090 H 0 0

Page 63: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

63

7.7460 -1.0680 1.2090 H 0 0

6.2850 -1.7070 1.9570 H 0 0

1 2 1 0

1 6 1 0

1 15 1 0

1 17 1 0

2 3 1 0

2 18 1 0

2 19 1 0

3 4 1 0

3 20 1 0

3 21 1 0

4 5 1 0

4 14 2 0

5 6 1 0

5 9 1 0

5 11 1 0

6 7 1 0

6 8 1 0

7 22 1 0

7 23 1 0

7 24 1 0

8 25 1 0

8 26 1 0

8 27 1 0

9 10 1 0

9 28 1 0

9 29 1 0

10 13 2 0

10 30 1 0

11 12 1 0

11 31 1 0

11 32 1 0

12 13 1 0

12 33 1 0

12 34 1 0

13 16 1 0

14 35 1 0

14 36 1 0

16 37 1 0

16 38 1 0

16 39 1 0

M END

> <Name>

cpd17

> <Absolute Energy>

27.5734

> <Estimate>

3600.78

> <FitValue>

1.47

> <HBA_1>

0

Page 64: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

64

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

0

0

0

3

> <MappingID>

1

> <Pharmprint>

'00001'

> <Relative Energy>

0

> <s_m_entry_id>

7701

> <s_m_entry_name>

cpd17

$$$$

cpd18

SciTegic09220911323D

40 41 0 0 1 0 999 V2000

5.0595 -4.2429 -1.6954 C 0 0 1 0 0 0

4.1684 -3.0977 -1.1571 C 0 0

4.9365 -1.8535 -0.6472 C 0 0

6.0831 -2.2666 0.3414 C 0 0 1 0 0 0

7.0909 -3.2834 -0.3670 C 0 0 1 0 0 0

6.5575 -3.8982 -1.6927 C 0 0

6.8411 -1.0212 0.9110 C 0 0

6.0331 -0.1023 1.8426 C 0 0

5.2342 -0.8797 2.8727 C 0 0

5.0321 -2.3249 2.6463 C 0 0

5.4089 -2.9611 1.5222 C 0 0

4.7127 -0.2896 3.9709 C 0 0

4.8711 1.5873 4.3820 Br 0 0

8.2930 -2.6328 -0.7449 O 0 0

7.5965 -4.3942 0.5707 C 0 0

5.5093 -1.0735 -1.8402 C 0 0

3.8790 -0.9449 -0.0037 C 0 0

4.7418 -5.9325 -0.7921 Br 0 0

4.7636 -4.4414 -2.7255 H 0 0

Page 65: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

65

3.5089 -3.4628 -0.3665 H 0 0

3.4802 -2.7826 -1.9452 H 0 0

6.7087 -3.1987 -2.5169 H 0 0

7.1566 -4.7635 -1.9878 H 0 0

7.7021 -1.3713 1.4839 H 0 0

7.2582 -0.4211 0.1033 H 0 0

6.7307 0.5744 2.3338 H 0 0

5.3699 0.5397 1.2675 H 0 0

4.5594 -2.9147 3.4193 H 0 0

5.2118 -4.0233 1.4746 H 0 0

4.1689 -0.9273 4.6516 H 0 0

8.3986 -2.6826 -1.7076 H 0 0

8.3894 -4.9855 0.1107 H 0 0

6.7859 -5.0722 0.8374 H 0 0

7.9920 -3.9672 1.4936 H 0 0

5.0087 -1.3326 -2.7732 H 0 0

6.5726 -1.2826 -1.9611 H 0 0

5.3959 -0.0015 -1.6882 H 0 0

2.9192 -1.0495 -0.5100 H 0 0

3.7512 -1.1892 1.0517 H 0 0

4.1795 0.1019 -0.0691 H 0 0

1 2 1 0

1 6 1 0

1 18 1 0

1 19 1 0

2 3 1 0

2 20 1 0

2 21 1 0

3 4 1 0

3 16 1 0

3 17 1 0

4 5 1 0

4 7 1 0

4 11 1 0

5 6 1 0

5 14 1 0

5 15 1 0

6 22 1 0

6 23 1 0

7 8 1 0

7 24 1 0

7 25 1 0

8 9 1 0

8 26 1 0

8 27 1 0

9 10 1 0

9 12 2 0

10 11 2 0

10 28 1 0

11 29 1 0

12 13 1 0

12 30 1 0

14 31 1 0

15 32 1 0

15 33 1 0

15 34 1 0

16 35 1 0

16 36 1 0

Page 66: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

66

16 37 1 0

17 38 1 0

17 39 1 0

17 40 1 0

M END

> <Name>

cpd18

> <Absolute Energy>

54.0496

> <Estimate>

130.098

> <FitValue>

2.90322

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

14

0

0

0

0

17

> <MappingID>

1

> <Pharmprint>

'10001'

> <Relative Energy>

21.6612

> <s_m_entry_id>

7718

> <s_m_entry_name>

cpd18

$$$$

cpd19

SciTegic09220911323D

Page 67: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

67

42 42 0 0 1 0 999 V2000

3.3985 -0.1312 2.7757 C 0 0

4.8409 0.2271 3.1849 C 0 0 1 0 0 0

5.7390 0.5439 1.9572 C 0 0

5.7305 -0.6669 0.9868 C 0 0 1 0 0 0

4.3137 -1.0883 0.6382 C 0 0

3.3633 -1.3079 1.7913 C 0 0

6.6046 -0.4140 -0.2524 C 0 0

8.0957 -0.6008 0.0270 C 0 0

8.8008 -1.4240 -1.0499 C 0 0 2 0 0 0

8.3064 -1.0989 -2.4361 C 0 0

8.8253 -1.7723 -3.4751 C 0 0

8.4062 -2.7700 -0.9054 O 0 0

10.3234 -1.3565 -0.9442 C 0 0

3.9033 -1.2588 -0.6337 C 0 0

5.2292 1.7934 1.2171 C 0 0

4.7913 1.6799 4.4795 Br 0 0

7.1838 0.8012 2.4113 C 0 0

2.9158 0.7315 2.3107 H 0 0

2.7991 -0.3825 3.6512 H 0 0

5.2671 -0.6191 3.7276 H 0 0

6.1819 -1.5094 1.5138 H 0 0

3.6475 -2.2237 2.3083 H 0 0

2.3444 -1.4583 1.4305 H 0 0

6.4113 0.5788 -0.6636 H 0 0

6.2867 -1.0423 -1.0841 H 0 0

8.2505 -1.0426 1.0125 H 0 0

8.5882 0.3631 0.1597 H 0 0

7.5594 -0.3613 -2.6876 H 0 0

8.5852 -1.6378 -4.5209 H 0 0

9.5573 -2.5232 -3.2211 H 0 0

7.4443 -2.8006 -1.0120 H 0 0

10.8104 -2.0529 -1.6278 H 0 0

10.6497 -1.5976 0.0668 H 0 0

10.6833 -0.3544 -1.1793 H 0 0

3.0283 -1.7972 -0.9666 H 0 0

4.5283 -0.8049 -1.3861 H 0 0

4.9136 2.5733 1.9085 H 0 0

4.3802 1.5442 0.5816 H 0 0

6.0102 2.2084 0.5801 H 0 0

7.2014 1.4660 3.2769 H 0 0

7.6806 -0.1336 2.6708 H 0 0

7.7606 1.2763 1.6170 H 0 0

1 2 1 0

1 6 1 0

1 18 1 0

1 19 1 0

2 3 1 0

2 16 1 0

2 20 1 0

3 4 1 0

3 15 1 0

3 17 1 0

4 5 1 0

4 7 1 0

4 21 1 0

5 6 1 0

Page 68: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

68

5 14 2 0

6 22 1 0

6 23 1 0

7 8 1 0

7 24 1 0

7 25 1 0

8 9 1 0

8 26 1 0

8 27 1 0

9 10 1 0

9 12 1 0

9 13 1 0

10 11 2 0

10 28 1 0

11 29 1 0

11 30 1 0

12 31 1 0

13 32 1 0

13 33 1 0

13 34 1 0

14 35 1 0

14 36 1 0

15 37 1 0

15 38 1 0

15 39 1 0

17 40 1 0

17 41 1 0

17 42 1 0

M END

> <Name>

cpd19

> <Absolute Energy>

50.1142

> <Estimate>

130.05

> <FitValue>

2.93992

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

12

Page 69: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

69

0

0

0

0

16

> <MappingID>

1

> <Pharmprint>

'10001'

> <Relative Energy>

18.8049

> <s_m_entry_id>

7751

> <s_m_entry_name>

cpd19

$$$$

cpd20

SciTegic09220911323D

48 51 0 0 0 0 999 V2000

1.2408 1.2452 0.6481 C 0 0

1.6952 0.5084 -0.3973 C 0 0

0.6519 -0.1129 -1.1330 C 0 0

-0.6955 0.0289 -0.7973 N 0 0

-1.0102 0.8278 0.3206 C 0 0

-0.0382 1.4773 1.0976 N 0 0

0.9744 -0.9499 -2.3015 C 0 0

-2.2960 0.9732 0.6538 N 0 0

3.0381 0.5067 -0.5410 C 0 0

3.4963 1.3213 0.5125 C 0 0

2.3729 1.7804 1.2546 N 0 0

2.4210 2.6593 2.4380 C 0 0

5.6029 1.5457 5.1044 C 0 0

4.2927 1.0980 5.3481 C 0 0

3.2524 1.4616 4.4775 C 0 0

3.5218 2.2743 3.3597 C 0 0

4.8311 2.7212 3.1154 C 0 0

5.8715 2.3571 3.9885 C 0 0

6.4028 1.2658 5.7746 H 0 0

4.0862 0.4743 6.2064 H 0 0

2.2473 1.1152 4.6695 H 0 0

5.0440 3.3453 2.2600 H 0 0

6.8789 2.7017 3.8010 H 0 0

3.8762 -0.2008 -1.5845 C 0 0

5.3654 -0.1234 -1.2450 C 0 0

6.4633 -3.0338 1.7230 C 0 0

6.3801 -3.4063 0.3705 C 0 0

6.0194 -2.4555 -0.6012 C 0 0

5.7437 -1.1307 -0.2193 C 0 0

5.8283 -0.7576 1.1340 C 0 0

6.1872 -1.7099 2.1047 C 0 0

6.7375 -3.7632 2.4679 H 0 0

Page 70: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

70

6.5906 -4.4246 0.0761 H 0 0

5.9562 -2.7479 -1.6390 H 0 0

5.6172 0.2590 1.4355 H 0 0

6.2512 -1.4212 3.1449 H 0 0

0.0637 -1.4202 -2.6720 H 0 0

1.7431 -1.6736 -2.0293 H 0 0

1.3735 -0.3236 -3.0980 H 0 0

-2.5825 1.5283 1.4355 H 0 0

-3.0080 0.5204 0.1167 H 0 0

4.5216 1.5766 0.7507 H 0 0

2.5574 3.6908 2.1190 H 0 0

1.4681 2.6068 2.9658 H 0 0

3.5515 -1.2378 -1.6693 H 0 0

3.6805 0.2376 -2.5644 H 0 0

5.9709 -0.2699 -2.1382 H 0 0

5.6297 0.8732 -0.8930 H 0 0

1 2 2 0

1 6 1 0

1 11 1 0

2 3 1 0

2 9 1 0

3 4 2 0

3 7 1 0

4 5 1 0

5 6 2 0

5 8 1 0

7 37 1 0

7 38 1 0

7 39 1 0

8 40 1 0

8 41 1 0

9 10 2 0

9 24 1 0

10 11 1 0

10 42 1 0

11 12 1 0

12 16 1 0

12 43 1 0

12 44 1 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 21 1 0

16 17 1 0

17 18 2 0

17 22 1 0

18 23 1 0

24 25 1 0

24 45 1 0

24 46 1 0

25 29 1 0

25 47 1 0

25 48 1 0

26 27 2 0

26 31 1 0

Page 71: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

71

26 32 1 0

27 28 1 0

27 33 1 0

28 29 2 0

28 34 1 0

29 30 1 0

30 31 2 0

30 35 1 0

31 36 1 0

M END

> <Name>

cpd20

> <Absolute Energy>

118.545

> <Estimate>

8.39066

> <FitValue>

4.30649

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

8

0

26

0

13

> <MappingID>

1

> <Pharmprint>

'01101'

> <Relative Energy>

8.79353

> <s_m_entry_id>

7735

> <s_m_entry_name>

Page 72: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

72

cpd20

$$$$

cpd21

SciTegic09220911323D

32 33 0 0 0 0 999 V2000

0.9244 -0.6459 1.5355 C 0 0

0.4991 -0.1270 0.3007 C 0 0

-0.6736 0.6410 0.2293 C 0 0

-1.4308 0.9008 1.3887 C 0 0

-1.0017 0.3779 2.6344 C 0 0

0.1773 -0.3919 2.6974 C 0 0

2.1709 -1.4641 1.6127 C 0 0

1.0697 -0.3167 -0.5968 H 0 0

-0.9838 1.0299 -0.7308 H 0 0

-2.8606 1.8485 1.2278 Cl 0 0

-1.8695 0.6519 4.0970 Cl 0 0

0.5112 -0.7951 3.6417 H 0 0

2.3429 -2.2793 2.6641 C 0 0

3.5510 -3.1048 2.7843 C 0 0

6.9912 -2.0841 0.4023 C 0 0

6.1002 -1.0798 0.8157 C 0 0

4.9780 -1.4110 1.5924 C 0 0

4.7444 -2.7513 1.9583 C 0 0

5.6391 -3.7537 1.5453 C 0 0

6.7614 -3.4211 0.7670 C 0 0

8.1841 -1.7290 -0.4224 B 0 0

6.2786 -0.0528 0.5333 H 0 0

4.2967 -0.6335 1.9062 H 0 0

5.4700 -4.7860 1.8198 H 0 0

7.4480 -4.1906 0.4483 H 0 0

3.5748 -4.0492 3.5379 O 0 0

8.7518 -2.6984 -1.1884 O 0 0

8.6701 -0.4584 -0.3931 O 0 0

2.8733 -1.3508 0.7991 H 0 0

1.5414 -2.2760 3.3893 H 0 0

9.1519 -2.3431 -1.9959 H 0 0

9.6300 -0.4289 -0.5320 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 29 1 0

13 14 1 0

13 30 1 0

14 18 1 0

14 26 2 0

15 16 2 0

Page 73: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

73

15 20 1 0

15 21 1 0

16 17 1 0

16 22 1 0

17 18 2 0

17 23 1 0

18 19 1 0

19 20 2 0

19 24 1 0

20 25 1 0

21 27 1 0

21 28 1 0

27 31 1 0

28 32 1 0

M END

> <Name>

cpd21

> <Absolute Energy>

54.5828

> <Estimate>

7.80768

> <FitValue>

4.32178

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

27

0

0

20

3

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

11.648

Page 74: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

74

> <s_m_entry_id>

7739

> <s_m_entry_name>

cpd21

$$$$

cpd22

SciTegic09220911323D

35 36 0 0 0 0 999 V2000

1.4240 0.2534 1.2624 C 0 0

0.4107 -0.7232 1.2577 C 0 0

-0.9147 -0.3571 0.9659 C 0 0

-1.2312 0.9826 0.6818 C 0 0

-0.2174 1.9613 0.6856 C 0 0

1.1096 1.5941 0.9758 C 0 0

2.8327 -0.1346 1.5737 C 0 0

0.6429 -1.7542 1.4759 H 0 0

-1.6915 -1.1063 0.9625 H 0 0

-2.2531 1.2513 0.4599 H 0 0

-0.6744 3.9172 0.2682 I 0 0

1.8887 2.3440 0.9790 H 0 0

3.7853 0.8130 1.5307 C 0 0

5.1836 0.4800 1.8298 C 0 0

6.6764 -3.3966 0.6749 C 0 0

5.7858 -2.7018 -0.1648 C 0 0

5.2981 -1.4382 0.2107 C 0 0

5.7005 -0.8633 1.4306 C 0 0

6.5896 -1.5555 2.2711 C 0 0

7.0747 -2.8187 1.8933 C 0 0

5.4754 -3.1382 -1.1012 H 0 0

4.6146 -0.9147 -0.4429 H 0 0

6.9036 -1.1213 3.2090 H 0 0

7.7575 -3.3453 2.5437 H 0 0

5.8979 1.2800 2.3862 O 0 0

3.0026 -1.1718 1.8162 H 0 0

3.4423 1.8025 1.2704 H 0 0

7.1315 -4.5808 0.3229 O 0 0

7.3264 -4.8350 -1.0623 C 0 0

8.1417 -3.7227 -1.6655 C 0 0

8.4790 -2.7694 -1.0058 O 0 0

8.4473 -3.8817 -2.9505 O 0 0

7.8563 -5.7807 -1.1621 H 0 0

6.3470 -4.8805 -1.5403 H 0 0

8.9685 -3.2024 -3.3984 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

Page 75: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

75

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

29 30 1 0

29 33 1 0

29 34 1 0

30 31 2 0

30 32 1 0

32 35 1 0

M END

> <Name>

cpd22

> <Absolute Energy>

61.3362

> <Estimate>

6.51928

> <FitValue>

4.39965

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

31

0

0

15

Page 76: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

76

3

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

17.6253

> <s_m_entry_id>

7719

> <s_m_entry_name>

cpd22

$$$$

cpd23

SciTegic09220911323D

35 36 0 0 0 0 999 V2000

1.0945 -0.1196 1.3277 C 0 0

0.6596 1.0923 0.7695 C 0 0

-0.7072 1.3040 0.5264 C 0 0

-1.6517 0.3031 0.8364 C 0 0

-1.2123 -0.9202 1.4014 C 0 0

0.1601 -1.1234 1.6407 C 0 0

2.5478 -0.3445 1.5866 C 0 0

1.3699 1.8684 0.5261 H 0 0

-1.0216 2.2433 0.0953 H 0 0

-3.3124 0.6271 0.5105 Cl 0 0

-2.3019 -2.1890 1.8119 Cl 0 0

0.5052 -2.0539 2.0710 H 0 0

3.4154 0.6335 1.2807 C 0 0

4.8542 0.4578 1.5176 C 0 0

6.6285 -3.3857 0.7106 C 0 0

5.6187 -2.8830 -0.1302 C 0 0

5.0409 -1.6283 0.1319 C 0 0

5.4692 -0.8729 1.2366 C 0 0

6.4781 -1.3730 2.0799 C 0 0

7.0556 -2.6268 1.8155 C 0 0

5.2869 -3.4603 -0.9794 H 0 0

4.2654 -1.2539 -0.5214 H 0 0

6.8129 -0.8001 2.9337 H 0 0

7.8302 -3.0077 2.4656 H 0 0

5.5233 1.3766 1.9295 O 0 0

2.8181 -1.3010 2.0106 H 0 0

2.9762 1.5282 0.8637 H 0 0

7.1711 -4.5601 0.4639 O 0 0

7.4053 -4.9161 -0.8900 C 0 0

8.1603 -3.8072 -1.5761 C 0 0

8.4547 -2.7952 -0.9821 O 0 0

8.4635 -4.0328 -2.8506 O 0 0

7.9973 -5.8301 -0.9051 H 0 0

6.4418 -5.0618 -1.3766 H 0 0

8.9473 -3.3616 -3.3480 H 0 0

Page 77: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

77

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

29 30 1 0

29 33 1 0

29 34 1 0

30 31 2 0

30 32 1 0

32 35 1 0

M END

> <Name>

cpd23

> <Absolute Energy>

62.5714

> <Estimate>

5.80163

> <FitValue>

4.40658

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

Page 78: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

78

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

31

0

0

20

2

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

15.9955

> <s_m_entry_id>

7747

> <s_m_entry_name>

cpd23

$$$$

cpd24

SciTegic09220911323D

29 30 0 0 0 0 999 V2000

1.1679 -0.4252 1.4891 C 0 0

0.1018 -0.8626 0.6827 C 0 0

-0.9906 -0.0135 0.4404 C 0 0

-1.0226 1.2738 1.0031 C 0 0

0.0412 1.7140 1.8092 C 0 0

1.1379 0.8628 2.0521 C 0 0

2.3297 -1.3266 1.7492 C 0 0

0.1171 -1.8505 0.2461 H 0 0

-1.8091 -0.3507 -0.1802 H 0 0

-1.8687 1.9142 0.8107 H 0 0

0.0010 3.5943 2.6347 I 0 0

1.9571 1.2000 2.6716 H 0 0

2.9943 -1.2045 2.9107 C 0 0

4.1412 -2.0692 3.2096 C 0 0

7.1912 -2.5676 0.2044 C 0 0

7.0722 -3.4978 1.2522 C 0 0

6.0800 -3.3360 2.2336 C 0 0

5.1982 -2.2402 2.1690 C 0 0

5.3158 -1.3101 1.1213 C 0 0

6.3088 -1.4731 0.1427 C 0 0

7.7466 -4.3408 1.3063 H 0 0

5.9973 -4.0565 3.0329 H 0 0

4.6426 -0.4659 1.0630 H 0 0

6.3958 -0.7564 -0.6608 H 0 0

Page 79: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

79

4.2257 -2.6261 4.2784 O 0 0

2.5705 -2.0354 0.9719 H 0 0

2.6208 -0.4431 3.5778 H 0 0

8.1237 -2.7201 -0.7143 O 0 0

8.1933 -2.0743 -1.4285 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

M END

> <Name>

cpd24

> <Absolute Energy>

36.5167

> <Estimate>

8.22444

> <FitValue>

4.30373

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

Page 80: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

80

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

28

0

0

15

3

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

0.122903

> <s_m_entry_id>

7746

> <s_m_entry_name>

cpd24

$$$$

cpd25

SciTegic09220911323D

32 33 0 0 0 0 999 V2000

0.9025 -0.7248 1.4657 C 0 0

0.7050 0.1051 0.3487 C 0 0

-0.4840 0.8443 0.2248 C 0 0

-1.4779 0.7587 1.2162 C 0 0

-1.2815 -0.0732 2.3392 C 0 0

-0.0886 -0.8130 2.4586 C 0 0

2.1644 -1.5124 1.5972 C 0 0

1.4617 0.1782 -0.4190 H 0 0

-0.6285 1.4794 -0.6359 H 0 0

-2.5933 1.4714 1.0705 F 0 0

-2.5903 -0.2132 3.6923 Br 0 0

0.0730 -1.4547 3.3153 H 0 0

2.6396 -1.7696 2.8262 C 0 0

3.8760 -2.5387 3.0048 C 0 0

7.0751 -2.0001 0.1712 C 0 0

6.9829 -3.1917 0.9084 C 0 0

5.9391 -3.3691 1.8334 C 0 0

4.9848 -2.3523 2.0227 C 0 0

5.0802 -1.1568 1.2848 C 0 0

6.1243 -0.9824 0.3599 C 0 0

7.7133 -3.9733 0.7622 H 0 0

5.8765 -4.2893 2.3970 H 0 0

4.3519 -0.3715 1.4239 H 0 0

6.1966 -0.0671 -0.2070 H 0 0

3.9905 -3.3073 3.9331 O 0 0

Page 81: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

81

2.6279 -1.8348 0.6762 H 0 0

2.0515 -1.3725 3.6422 H 0 0

8.1812 -1.8126 -0.8098 B 0 0

8.3511 -0.5844 -1.3708 O 0 0

8.9914 -2.8625 -1.1199 O 0 0

9.2772 -0.4039 -1.5905 H 0 0

9.3284 -2.8105 -2.0284 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

28 30 1 0

29 31 1 0

30 32 1 0

M END

> <Name>

cpd25

> <Absolute Energy>

42.6974

> <Estimate>

5.81327

> <FitValue>

4.18038

> <HBA_1>

1

> <HBD_2>

0

Page 82: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

82

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

30

0

0

16

3

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

1.00849

> <s_m_entry_id>

7737

> <s_m_entry_name>

cpd25

$$$$

cpd26

SciTegic09220911323D

32 33 0 0 0 0 999 V2000

0.8315 -0.3017 1.4819 C 0 0

-0.0669 -0.3431 0.4053 C 0 0

-1.1472 0.5520 0.3567 C 0 0

-1.3426 1.4979 1.3836 C 0 0

-0.4337 1.5427 2.4731 C 0 0

0.6489 0.6367 2.5093 C 0 0

1.9782 -1.2541 1.5344 C 0 0

0.0661 -1.0597 -0.3920 H 0 0

-1.8291 0.5024 -0.4806 H 0 0

-2.9665 2.7587 1.2124 I 0 0

-0.5882 2.7695 3.9039 Br 0 0

1.3496 0.6579 3.3325 H 0 0

2.4562 -1.6229 2.7339 C 0 0

3.5848 -2.5574 2.8358 C 0 0

6.9441 -2.0404 0.1895 C 0 0

6.7142 -3.2852 0.7986 C 0 0

5.6189 -3.4552 1.6620 C 0 0

4.7490 -2.3789 1.9188 C 0 0

4.9792 -1.1315 1.3065 C 0 0

6.0761 -0.9638 0.4447 C 0 0

Page 83: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

83

7.3797 -4.1104 0.6029 H 0 0

5.4486 -4.4154 2.1268 H 0 0

4.3174 -0.2986 1.4967 H 0 0

6.2538 -0.0077 -0.0260 H 0 0

3.5645 -3.4529 3.6481 O 0 0

2.3612 -1.5978 0.5847 H 0 0

1.9564 -1.1860 3.5847 H 0 0

8.1058 -1.8609 -0.7260 B 0 0

8.3795 -0.6104 -1.1866 O 0 0

8.8586 -2.9361 -1.0780 O 0 0

9.3288 -0.4713 -1.3360 H 0 0

9.2282 -2.8541 -1.9716 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

28 30 1 0

29 31 1 0

30 32 1 0

M END

> <Name>

cpd26

> <Absolute Energy>

43.773

> <Estimate>

5.66346

> <FitValue>

4.26932

Page 84: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

84

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

30

0

0

16

2

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

0.554945

> <s_m_entry_id>

7720

> <s_m_entry_name>

cpd26

$$$$

cpd27

SciTegic09220911323D

32 33 0 0 0 0 999 V2000

0.9145 -0.7629 1.4728 C 0 0

0.7285 0.1081 0.3847 C 0 0

-0.4730 0.8244 0.2571 C 0 0

-1.4929 0.6744 1.2127 C 0 0

-1.3086 -0.1994 2.3065 C 0 0

-0.1032 -0.9163 2.4298 C 0 0

2.1911 -1.5273 1.6083 C 0 0

1.5052 0.2327 -0.3552 H 0 0

-0.6091 1.4915 -0.5812 H 0 0

-2.6236 1.3642 1.0674 F 0 0

-2.5354 -0.4026 3.4897 Cl 0 0

0.0440 -1.5900 3.2653 H 0 0

2.6417 -1.8132 2.8405 C 0 0

3.8921 -2.5602 3.0267 C 0 0

7.0879 -1.9722 0.1984 C 0 0

Page 85: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

85

6.1441 -0.9539 0.4136 C 0 0

5.1009 -1.1447 1.3372 C 0 0

5.0007 -2.3558 2.0452 C 0 0

5.9465 -3.3745 1.8293 C 0 0

6.9895 -3.1808 0.9055 C 0 0

6.2206 -0.0241 -0.1298 H 0 0

4.3798 -0.3570 1.4957 H 0 0

5.8774 -4.3081 2.3683 H 0 0

7.7151 -3.9630 0.7386 H 0 0

4.0174 -3.3236 3.9545 O 0 0

2.6836 -1.8076 0.6905 H 0 0

2.0263 -1.4568 3.6545 H 0 0

8.1944 -1.7686 -0.7805 B 0 0

8.9712 -2.8339 -1.1106 O 0 0

8.4009 -0.5370 -1.3176 O 0 0

9.3156 -2.7734 -2.0161 H 0 0

9.3336 -0.3799 -1.5366 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

28 30 1 0

29 31 1 0

30 32 1 0

M END

> <Name>

cpd27

> <Absolute Energy>

42.6308

> <Estimate>

Page 86: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

86

6.38374

> <FitValue>

4.18591

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

29

0

0

20

3

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

1.14101

> <s_m_entry_id>

7711

> <s_m_entry_name>

cpd27

$$$$

cpd28

SciTegic09220911323D

32 33 0 0 0 0 999 V2000

1.3075 -0.3408 1.5464 C 0 0

1.3555 0.6560 0.5555 C 0 0

0.1664 1.2244 0.0682 C 0 0

-1.0766 0.7969 0.5705 C 0 0

-1.1269 -0.2022 1.5632 C 0 0

0.0646 -0.7678 2.0497 C 0 0

2.5713 -0.9447 2.0633 C 0 0

2.3055 0.9923 0.1640 H 0 0

0.2108 1.9899 -0.6925 H 0 0

-2.1999 1.3404 0.1042 F 0 0

Page 87: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

87

-2.2996 -0.6126 2.0420 F 0 0

0.0221 -1.5341 2.8126 H 0 0

2.5443 -2.2090 2.5142 C 0 0

3.7621 -2.8448 3.0321 C 0 0

7.3708 -2.6067 0.6918 C 0 0

6.1195 -2.4974 0.0662 C 0 0

4.9409 -2.5755 0.8281 C 0 0

5.0130 -2.7608 2.2203 C 0 0

6.2682 -2.8717 2.8470 C 0 0

7.4462 -2.7932 2.0838 C 0 0

6.0623 -2.3534 -1.0037 H 0 0

3.9826 -2.4899 0.3376 H 0 0

6.3367 -3.0162 3.9153 H 0 0

8.4093 -2.8775 2.5641 H 0 0

3.7468 -3.4219 4.0928 O 0 0

3.4483 -0.3140 2.0436 H 0 0

1.5843 -2.6978 2.4629 H 0 0

8.6218 -2.5236 -0.1172 B 0 0

9.7981 -2.3077 0.5279 O 0 0

8.5589 -2.6655 -1.4692 O 0 0

10.4333 -1.8148 -0.0161 H 0 0

9.3655 -3.0617 -1.8359 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 26 1 0

13 14 1 0

13 27 1 0

14 18 1 0

14 25 2 0

15 16 2 0

15 20 1 0

15 28 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 19 1 0

19 20 2 0

19 23 1 0

20 24 1 0

28 29 1 0

28 30 1 0

29 31 1 0

30 32 1 0

M END

> <Name>

cpd28

Page 88: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

88

> <Absolute Energy>

61.8796

> <Estimate>

7.20158

> <FitValue>

4.09145

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

30

0

0

16

4

0

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

21.037

> <s_m_entry_id>

7730

> <s_m_entry_name>

cpd28

$$$$

cpd29

SciTegic09220911323D

27 29 0 0 0 0 999 V2000

1.3360 -0.3573 0.7483 C 0 0

0.7351 0.2006 -0.3961 C 0 0

-0.5736 0.7089 -0.3258 C 0 0

-1.2872 0.6628 0.8845 C 0 0

-0.6853 0.1053 2.0259 C 0 0

Page 89: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

89

0.6232 -0.4042 1.9605 C 0 0

2.7156 -0.8949 0.6757 C 0 0

1.2693 0.2437 -1.3350 H 0 0

-1.0304 1.1359 -1.2067 H 0 0

-2.5135 1.1395 0.9483 O 0 0

-1.2288 0.0675 2.9592 H 0 0

1.0690 -0.8298 2.8481 H 0 0

3.5346 -0.7969 -0.8681 S 0 0

4.8316 -1.5465 -0.0545 C 0 0

4.6635 -1.8492 1.2865 C 0 0

3.4192 -1.4781 1.7591 C 0 0

6.0563 -1.8661 -0.6891 C 0 0

7.0927 -2.4911 0.0520 C 0 0

6.9013 -2.7919 1.4242 C 0 0

5.6760 -2.4701 2.0559 C 0 0

8.2522 -2.7966 -0.5461 O 0 0

-2.9926 1.1016 1.7863 H 0 0

3.0480 -1.6092 2.7682 H 0 0

6.1985 -1.6345 -1.7339 H 0 0

7.6895 -3.2671 1.9914 H 0 0

5.5249 -2.6973 3.1016 H 0 0

8.9510 -3.2218 -0.0323 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 2 0

10 22 1 0

13 14 1 0

14 15 1 0

14 17 2 0

15 16 1 0

15 20 2 0

16 23 1 0

17 18 1 0

17 24 1 0

18 19 2 0

18 21 1 0

19 20 1 0

19 25 1 0

20 26 1 0

21 27 1 0

M END

> <Name>

cpd29

> <Absolute Energy>

118.889

Page 90: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

90

> <Estimate>

0.460704

> <FitValue>

5.74964

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

21

0

10

0

19

5

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

-1.33454e-06

> <s_m_entry_id>

7704

> <s_m_entry_name>

cpd29

$$$$

cpd30

SciTegic09220911323D

28 30 0 0 1 0 999 V2000

1.8005 0.1287 1.7507 C 0 0

1.1430 1.3590 1.9206 C 0 0

-0.1682 1.5279 1.4390 C 0 0

-0.8245 0.4680 0.7878 C 0 0

-0.1630 -0.7643 0.6210 C 0 0

1.1471 -0.9322 1.1016 C 0 0

3.1871 -0.0500 2.2613 C 0 0 2 0 0 0

1.6394 2.1797 2.4197 H 0 0

Page 91: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

91

-0.6693 2.4751 1.5701 H 0 0

-2.0512 0.6263 0.3374 O 0 0

-0.6619 -1.5797 0.1218 H 0 0

1.6477 -1.8817 0.9678 H 0 0

4.2180 0.3104 1.2564 N 0 0

5.0431 -0.8810 1.0166 C 0 0

4.4901 -1.8622 1.8396 C 0 0

3.4412 -1.4356 2.5450 O 0 0

6.1488 -1.0463 0.1596 C 0 0

6.7596 -2.3200 0.1251 C 0 0

6.2507 -3.3641 0.9375 C 0 0

5.1323 -3.1286 1.7790 C 0 0

7.8125 -2.5408 -0.6724 O 0 0

-2.4908 -0.1116 -0.1074 H 0 0

6.5174 -0.2307 -0.4479 H 0 0

6.7141 -4.3411 0.9172 H 0 0

4.7577 -3.9343 2.3944 H 0 0

8.1499 -1.8203 -1.2231 H 0 0

3.3296 0.5239 3.1644 H 0 0

4.3744 1.1864 0.8018 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 27 1 0

10 22 1 0

13 14 1 0

13 28 1 0

14 15 2 0

14 17 1 0

15 16 1 0

15 20 1 0

17 18 2 0

17 23 1 0

18 19 1 0

18 21 1 0

19 20 2 0

19 24 1 0

20 25 1 0

21 26 1 0

M END

> <Name>

cpd30

> <Absolute Energy>

58.1719

> <Estimate>

Page 92: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

92

0.426101

> <FitValue>

5.16306

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

21

0

10

0

19

4

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

0.312101

> <s_m_entry_id>

7708

> <s_m_entry_name>

cpd30

$$$$

cpd31

SciTegic09220911323D

33 35 0 0 1 0 999 V2000

4.6979 -2.2089 1.4280 C 0 0

5.1188 -1.2212 0.5208 C 0 0

6.3346 -1.3715 -0.1683 C 0 0

7.1329 -2.5095 0.0452 C 0 0

6.7102 -3.4963 0.9531 C 0 0

5.4940 -3.3475 1.6438 C 0 0

3.4130 -2.0507 2.1576 C 0 0 2 0 0 0

4.5120 -0.3437 0.3506 H 0 0

6.6541 -0.6101 -0.8648 H 0 0

Page 93: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

93

8.2725 -2.6504 -0.6018 O 0 0

7.3185 -4.3723 1.1224 H 0 0

5.1771 -4.1106 2.3395 H 0 0

2.1514 -2.2772 1.2620 C 0 0

1.4050 -0.9822 1.4580 C 0 0

2.1606 -0.1436 2.2905 C 0 0

3.3041 -0.7120 2.6735 O 0 0

0.1523 -0.5495 0.9506 C 0 0

-0.3567 0.7263 1.2712 C 0 0

0.3921 1.5796 2.1043 C 0 0

1.6393 1.1416 2.6035 C 0 0

-1.5417 1.1237 0.7867 O 0 0

8.8113 -3.4357 -0.4453 H 0 0

-0.4177 -1.2074 0.3112 H 0 0

0.0112 2.5582 2.3572 H 0 0

2.4236 2.0414 3.4754 C 0 0

-2.0435 0.5270 0.2165 H 0 0

3.4022 -2.7306 2.9990 H 0 0

2.3798 -2.4186 0.2147 H 0 0

3.6277 1.6311 3.9082 C 0 0

1.5599 -3.1141 1.6048 H 0 0

4.1104 0.6897 3.6887 H 0 0

4.1542 2.3291 4.5416 H 0 0

2.1216 3.0223 3.8112 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 27 1 0

10 22 1 0

13 14 1 0

13 28 1 0

13 30 1 0

14 15 2 0

14 17 1 0

15 16 1 0

15 20 1 0

17 18 2 0

17 23 1 0

18 19 1 0

18 21 1 0

19 20 2 0

19 24 1 0

20 25 1 0

21 26 1 0

25 29 2 0

25 33 1 0

29 31 1 0

Page 94: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

94

29 32 1 0

M END

> <Name>

cpd31

> <Absolute Energy>

68.5959

> <Estimate>

0.302667

> <FitValue>

5.43598

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

21

0

5

18

29

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

6.70765

> <s_m_entry_id>

9

> <s_m_entry_name>

cpd31

$$$$

cpd32

SciTegic09220911323D

33 35 0 0 1 0 999 V2000

Page 95: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

95

4.5018 -1.9563 1.4788 C 0 0

5.4527 -2.8584 1.9873 C 0 0

6.6436 -3.0967 1.2793 C 0 0

6.8878 -2.4363 0.0616 C 0 0

5.9346 -1.5344 -0.4435 C 0 0

4.7438 -1.2935 0.2618 C 0 0

3.2431 -1.7021 2.2265 C 0 0 2 0 0 0

5.2736 -3.3703 2.9211 H 0 0

7.3711 -3.7904 1.6737 H 0 0

8.0047 -2.6615 -0.6010 O 0 0

6.1164 -1.0241 -1.3776 H 0 0

4.0171 -0.5994 -0.1344 H 0 0

1.9641 -2.2267 1.4950 C 0 0

1.1284 -0.9742 1.4111 C 0 0

1.8539 0.0926 1.9615 C 0 0

3.0533 -0.2867 2.4012 O 0 0

-0.1748 -0.7635 0.8926 C 0 0

-0.7656 0.5170 0.9196 C 0 0

-0.0477 1.5969 1.4686 C 0 0

1.2510 1.3802 1.9816 C 0 0

-1.9984 0.7043 0.4276 O 0 0

8.1594 -2.2010 -1.4355 H 0 0

-0.7207 -1.5956 0.4728 H 0 0

-0.4896 2.5823 1.4972 H 0 0

1.9986 2.5124 2.5505 C 0 0

-2.4776 -0.0469 0.0544 H 0 0

3.3231 -2.1486 3.2087 H 0 0

2.1565 -2.6126 0.5026 H 0 0

2.8289 3.2001 1.5652 C 0 0

1.4549 -2.9854 2.0711 H 0 0

2.6241 2.1600 3.3704 H 0 0

3.4880 3.7465 0.7837 N 0 0

1.3007 3.2215 2.9954 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 27 1 0

10 22 1 0

13 14 1 0

13 28 1 0

13 30 1 0

14 15 2 0

14 17 1 0

15 16 1 0

15 20 1 0

17 18 2 0

17 23 1 0

Page 96: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

96

18 19 1 0

18 21 1 0

19 20 2 0

19 24 1 0

20 25 1 0

21 26 1 0

25 29 1 0

25 31 1 0

25 33 1 0

29 32 3 0

M END

> <Name>

cpd32

> <Absolute Energy>

54.2625

> <Estimate>

0.280258

> <FitValue>

5.42766

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

21

0

3

18

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

0.000559556

> <s_m_entry_id>

7713

Page 97: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

97

> <s_m_entry_name>

cpd32

$$$$

cpd33

SciTegic09220911323D

29 31 0 0 1 0 999 V2000

4.4892 -1.9459 1.5698 C 0 0

5.3899 -2.9521 1.9607 C 0 0

6.5579 -3.1796 1.2138 C 0 0

6.8303 -2.4043 0.0720 C 0 0

5.9279 -1.3978 -0.3174 C 0 0

4.7588 -1.1684 0.4295 C 0 0

3.2545 -1.7041 2.3597 C 0 0 2 0 0 0

5.1884 -3.5522 2.8367 H 0 0

7.2470 -3.9538 1.5175 H 0 0

7.9257 -2.6183 -0.6283 O 0 0

6.1309 -0.7989 -1.1928 H 0 0

4.0711 -0.3936 0.1231 H 0 0

2.0236 -2.1175 1.6435 N 0 0

1.1723 -0.9314 1.4942 C 0 0

1.8979 0.0993 2.0934 C 0 0

3.0746 -0.2963 2.5835 O 0 0

-0.0958 -0.8127 0.8888 C 0 0

-0.6946 0.4669 0.8832 C 0 0

-0.0205 1.5644 1.4743 C 0 0

1.2568 1.3697 2.0680 C 0 0

-1.8970 0.6416 0.3202 O 0 0

8.1002 -2.0782 -1.4105 H 0 0

-0.5887 -1.6663 0.4471 H 0 0

-0.4857 2.5400 1.4657 H 0 0

1.9260 2.4943 2.6617 C 0 0

-2.3461 -0.1146 -0.0793 H 0 0

2.4657 3.4026 3.1406 N 0 0

3.3200 -2.2052 3.3142 H 0 0

1.7681 -3.0240 1.3109 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 28 1 0

10 22 1 0

13 14 1 0

13 29 1 0

14 15 2 0

14 17 1 0

Page 98: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

98

15 16 1 0

15 20 1 0

17 18 2 0

17 23 1 0

18 19 1 0

18 21 1 0

19 20 2 0

19 24 1 0

20 25 1 0

21 26 1 0

25 27 3 0

M END

> <Name>

cpd33

> <Absolute Energy>

58.2381

> <Estimate>

0.31062

> <FitValue>

5.25357

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

21

0

3

18

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

0.000386669

> <s_m_entry_id>

Page 99: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

99

7748

> <s_m_entry_name>

cpd33

$$$$

cpd34

SciTegic09220911323D

85 87 0 0 0 0 999 V2000

5.3008 -2.0192 1.2902 C 0 0

5.6733 -3.3734 1.2618 C 0 0

6.8644 -3.7615 0.6257 C 0 0

7.6879 -2.8000 0.0153 C 0 0

7.3131 -1.4434 0.0439 C 0 0

6.1211 -1.0537 0.6809 C 0 0

4.0455 -1.6085 1.9596 C 0 0

5.0470 -4.1211 1.7283 H 0 0

7.1465 -4.8052 0.6072 H 0 0

8.8034 -3.1655 -0.5813 O 0 0

7.9399 -0.6994 -0.4223 H 0 0

5.8408 -0.0107 0.6978 H 0 0

-1.8211 0.8059 1.0465 C 0 0

-0.6489 1.4342 0.5944 C 0 0

0.6103 0.9013 0.9199 C 0 0

0.6991 -0.2625 1.7028 C 0 0

-0.4728 -0.8944 2.1579 C 0 0

-1.7311 -0.3601 1.8275 C 0 0

-3.0029 1.3059 0.7392 O 0 0

-0.7131 2.3304 -0.0082 H 0 0

1.5066 1.3917 0.5675 H 0 0

-0.4129 -1.7903 2.7577 H 0 0

-2.6275 -0.8479 2.1797 H 0 0

3.7170 -1.6415 3.2960 O 0 0

2.4405 -1.1475 3.3381 C 0 0

2.0250 -0.8265 2.0470 C 0 0

3.0292 -1.1070 1.1282 C 0 0

3.0137 -0.9197 -0.3780 C 0 0

2.8919 -2.2587 -1.1038 C 0 0

1.6646 -0.9997 4.6299 C 0 0

2.0396 0.2942 5.3574 C 0 0

2.8453 1.2516 4.4806 C 0 0

4.2456 1.5193 5.0334 C 0 0

5.2630 1.8311 3.9356 C 0 0

6.6873 1.9758 4.4762 C 0 0

7.5624 2.5296 3.4582 N 0 0

7.7055 1.6028 2.3480 C 0 0

8.8640 2.8486 4.0230 C 0 0

9.5913 3.8723 3.1534 C 0 0

11.0543 4.0535 3.5524 C 0 0

11.1896 4.7664 5.2174 S 0 0

10.6718 6.4635 4.8350 C 0 0

11.1298 7.4341 5.9216 C 0 0

10.5338 7.1105 7.2926 C 0 0

10.8754 8.1622 8.3490 C 0 0

12.3561 8.1587 8.7296 C 0 0

9.3603 -2.4932 -0.9961 H 0 0

2.1949 -0.2554 -0.6535 H 0 0

Page 100: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

100

3.9194 -0.3950 -0.6874 H 0 0

1.9816 -2.7910 -0.8227 H 0 0

2.8743 -2.1131 -2.1828 H 0 0

3.7387 -2.9020 -0.8698 H 0 0

1.8477 -1.8654 5.2641 H 0 0

0.5945 -1.0243 4.4175 H 0 0

2.5737 0.0727 6.2814 H 0 0

1.1484 0.7852 5.7509 H 0 0

2.3064 2.1851 4.3313 H 0 0

2.9009 0.8830 3.4564 H 0 0

4.5842 0.6848 5.6489 H 0 0

4.2209 2.3186 5.7739 H 0 0

4.9706 2.7230 3.3812 H 0 0

5.2240 1.0792 3.1508 H 0 0

7.0734 1.0109 4.8041 H 0 0

6.7026 2.6172 5.3573 H 0 0

8.4411 1.9021 1.6030 H 0 0

7.9949 0.6220 2.7287 H 0 0

6.7460 1.4917 1.8428 H 0 0

9.4513 1.9358 4.1173 H 0 0

8.7360 3.2262 5.0380 H 0 0

9.0672 4.8272 3.1619 H 0 0

9.5107 3.6068 2.0983 H 0 0

11.5735 4.6967 2.8403 H 0 0

11.5844 3.1019 3.5215 H 0 0

9.5876 6.4964 4.7224 H 0 0

11.0721 6.7554 3.8641 H 0 0

10.9072 8.4634 5.6392 H 0 0

12.2191 7.4686 5.9744 H 0 0

10.8434 6.1180 7.6234 H 0 0

9.4566 6.9713 7.2210 H 0 0

10.2496 8.0368 9.2328 H 0 0

10.5645 9.1545 8.0178 H 0 0

12.5470 8.8686 9.5335 H 0 0

12.9744 8.4197 7.8712 H 0 0

12.6631 7.1715 9.0745 H 0 0

-3.0494 2.1065 0.2015 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

7 27 2 0

10 47 1 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

Page 101: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

101

15 21 1 0

16 17 1 0

16 26 1 0

17 18 2 0

17 22 1 0

18 23 1 0

19 85 1 0

24 25 1 0

25 26 2 0

25 30 1 0

26 27 1 0

27 28 1 0

28 29 1 0

28 48 1 0

28 49 1 0

29 50 1 0

29 51 1 0

29 52 1 0

30 31 1 0

30 53 1 0

30 54 1 0

31 32 1 0

31 55 1 0

31 56 1 0

32 33 1 0

32 57 1 0

32 58 1 0

33 34 1 0

33 59 1 0

33 60 1 0

34 35 1 0

34 61 1 0

34 62 1 0

35 36 1 0

35 63 1 0

35 64 1 0

36 37 1 0

36 38 1 0

37 65 1 0

37 66 1 0

37 67 1 0

38 39 1 0

38 68 1 0

38 69 1 0

39 40 1 0

39 70 1 0

39 71 1 0

40 41 1 0

40 72 1 0

40 73 1 0

41 42 1 0

42 43 1 0

42 74 1 0

42 75 1 0

43 44 1 0

43 76 1 0

43 77 1 0

44 45 1 0

Page 102: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

102

44 78 1 0

44 79 1 0

45 46 1 0

45 80 1 0

45 81 1 0

46 82 1 0

46 83 1 0

46 84 1 0

M END

> <Name>

cpd34

> <Absolute Energy>

58.5306

> <Estimate>

0.1324638

> <FitValue>

6.67852

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

19

0

2

15

34

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

19.551

> <s_m_entry_id>

7732

> <s_m_entry_name>

Page 103: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

103

cpd34

$$$$

cpd35

SciTegic09220911323D

80 82 0 0 0 0 999 V2000

5.3856 -1.9136 1.3348 C 0 0

6.6046 -1.2994 1.6679 C 0 0

7.7875 -1.6769 1.0095 C 0 0

7.7544 -2.6712 0.0147 C 0 0

6.5353 -3.2848 -0.3168 C 0 0

5.3502 -2.9068 0.3419 C 0 0

4.1395 -1.5144 2.0297 C 0 0

6.6394 -0.5338 2.4312 H 0 0

8.7213 -1.2023 1.2683 H 0 0

8.8638 -3.0262 -0.6022 O 0 0

6.5018 -4.0493 -1.0791 H 0 0

4.4160 -3.3836 0.0801 H 0 0

-1.8107 0.7232 1.1774 C 0 0

-1.6582 -0.2604 2.1706 C 0 0

-0.3794 -0.7544 2.4867 C 0 0

0.7499 -0.2623 1.8107 C 0 0

0.5995 0.7219 0.8177 C 0 0

-0.6800 1.2145 0.5031 C 0 0

-3.0101 1.1840 0.8830 O 0 0

-2.5233 -0.6410 2.6922 H 0 0

-0.2719 -1.5104 3.2505 H 0 0

1.4624 1.1062 0.2935 H 0 0

-0.7903 1.9692 -0.2612 H 0 0

3.8433 -1.5147 3.3713 O 0 0

2.5548 -1.0498 3.4335 C 0 0

2.0975 -0.7799 2.1432 C 0 0

3.0897 -1.0655 1.2153 C 0 0

1.8082 -0.8821 4.7411 C 0 0

2.1726 0.4348 5.4221 C 0 0

2.8937 1.4043 4.4867 C 0 0

4.3668 1.0469 4.2851 C 0 0

5.3139 2.0726 4.9092 C 0 0

6.7259 1.5241 5.1122 C 0 0

7.6786 2.6126 5.2460 N 0 0

7.3034 3.4871 6.3439 C 0 0

7.7713 3.3615 4.0060 C 0 0

9.1956 3.8782 3.7968 C 0 0

9.4528 5.2060 4.5116 C 0 0

10.9559 6.0027 3.8780 S 0 0

10.2912 6.6358 2.3127 C 0 0

11.3319 7.4826 1.5783 C 0 0

10.8811 7.8886 0.1758 C 0 0

9.5908 8.7076 0.1835 C 0 0

8.3402 7.8427 0.0115 C 0 0

9.6949 -2.5966 -0.3643 H 0 0

2.0264 -1.7288 5.3922 H 0 0

0.7369 -0.9374 4.5554 H 0 0

2.7643 0.2541 6.3207 H 0 0

1.2869 0.9044 5.8542 H 0 0

2.7914 2.4306 4.8400 H 0 0

2.3782 1.4678 3.5270 H 0 0

Page 104: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

104

4.5883 0.9126 3.2267 H 0 0

4.5759 0.0479 4.6663 H 0 0

4.9066 2.4523 5.8459 H 0 0

5.3378 2.9863 4.3135 H 0 0

7.0162 0.8856 4.2791 H 0 0

6.7686 0.8924 6.0010 H 0 0

8.0839 4.1869 6.6481 H 0 0

6.4270 4.0695 6.0626 H 0 0

7.0381 2.8859 7.2146 H 0 0

7.0615 4.1889 4.0285 H 0 0

7.4649 2.7276 3.1744 H 0 0

9.4230 3.9639 2.7341 H 0 0

9.9259 3.1296 4.1001 H 0 0

9.5512 5.0502 5.5871 H 0 0

8.6060 5.8795 4.3914 H 0 0

9.3913 7.2179 2.5076 H 0 0

9.9677 5.8006 1.6910 H 0 0

12.2923 6.9678 1.5403 H 0 0

11.5972 8.3625 2.1678 H 0 0

10.7761 7.0113 -0.4643 H 0 0

11.6741 8.4258 -0.3448 H 0 0

9.6263 9.4900 -0.5735 H 0 0

9.5193 9.3084 1.0920 H 0 0

7.4412 8.4584 0.0274 H 0 0

8.2774 7.0953 0.8019 H 0 0

8.3662 7.3173 -0.9424 H 0 0

-3.1001 1.8597 0.1984 H 0 0

3.0441 -0.9413 -0.1213 O 0 0

3.8271 -1.1594 -0.6413 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

7 27 2 0

10 45 1 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 21 1 0

16 17 1 0

16 26 1 0

17 18 2 0

17 22 1 0

18 23 1 0

19 78 1 0

24 25 1 0

Page 105: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

105

25 26 2 0

25 28 1 0

26 27 1 0

27 79 1 0

28 29 1 0

28 46 1 0

28 47 1 0

29 30 1 0

29 48 1 0

29 49 1 0

30 31 1 0

30 50 1 0

30 51 1 0

31 32 1 0

31 52 1 0

31 53 1 0

32 33 1 0

32 54 1 0

32 55 1 0

33 34 1 0

33 56 1 0

33 57 1 0

34 35 1 0

34 36 1 0

35 58 1 0

35 59 1 0

35 60 1 0

36 37 1 0

36 61 1 0

36 62 1 0

37 38 1 0

37 63 1 0

37 64 1 0

38 39 1 0

38 65 1 0

38 66 1 0

39 40 1 0

40 41 1 0

40 67 1 0

40 68 1 0

41 42 1 0

41 69 1 0

41 70 1 0

42 43 1 0

42 71 1 0

42 72 1 0

43 44 1 0

43 73 1 0

43 74 1 0

44 75 1 0

44 76 1 0

44 77 1 0

79 80 1 0

M END

> <Name>

cpd35

> <Absolute Energy>

Page 106: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

106

70.1438

> <Estimate>

0.8311639

> <FitValue>

6.70441

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

19

0

1

17

30

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

30.9608

> <s_m_entry_id>

7712

> <s_m_entry_name>

cpd35

$$$$

cpd36

SciTegic09220911323D

37 39 0 0 0 0 999 V2000

0.6383 0.6756 1.6618 C 0 0

-0.3722 0.2792 2.5553 C 0 0

-1.7238 0.4402 2.2050 C 0 0

-2.0709 0.9976 0.9616 C 0 0

-1.0589 1.3933 0.0696 C 0 0

0.2941 1.2332 0.4177 C 0 0

Page 107: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

107

2.0634 0.5064 2.0298 C 0 0

-0.1143 -0.1502 3.5133 H 0 0

-2.4965 0.1339 2.8953 H 0 0

-3.3383 1.1481 0.6341 O 0 0

-1.3186 1.8221 -0.8870 H 0 0

1.0642 1.5406 -0.2748 H 0 0

7.5664 -2.3694 0.4427 C 0 0

6.8628 -1.5212 -0.4312 C 0 0

5.7204 -0.8362 0.0152 C 0 0

5.2762 -0.9979 1.3396 C 0 0

5.9781 -1.8449 2.2156 C 0 0

7.1201 -2.5290 1.7674 C 0 0

8.6381 -3.0118 0.0232 O 0 0

7.2000 -1.3940 -1.4491 H 0 0

5.1865 -0.1859 -0.6630 H 0 0

5.6422 -1.9737 3.2346 H 0 0

7.6566 -3.1793 2.4428 H 0 0

2.7676 1.0600 3.0735 O 0 0

4.0324 0.5595 2.9259 C 0 0

4.0724 -0.2765 1.8114 C 0 0

2.8249 -0.3390 1.2048 C 0 0

5.1648 0.9067 3.8704 C 0 0

-3.5627 1.5324 -0.2233 H 0 0

4.9350 1.8387 4.3862 H 0 0

5.3337 0.0761 4.5557 H 0 0

9.1110 -3.5909 0.6338 H 0 0

2.4090 -1.1205 -0.0285 C 0 0

2.4752 -0.5586 -0.9595 H 0 0

6.0811 1.0594 3.2995 H 0 0

1.3781 -1.4575 0.0851 H 0 0

3.0384 -2.0055 -0.1272 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

7 27 2 0

10 29 1 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 21 1 0

16 17 1 0

16 26 1 0

17 18 2 0

17 22 1 0

18 23 1 0

Page 108: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

108

19 32 1 0

24 25 1 0

25 26 2 0

25 28 1 0

26 27 1 0

27 33 1 0

28 30 1 0

28 31 1 0

28 35 1 0

33 34 1 0

33 36 1 0

33 37 1 0

M END

> <Name>

cpd36

> <Absolute Energy>

37.1096

> <Estimate>

2.40989

> <FitValue>

5.358

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

19

0

10

0

18

6

28

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

-0.101019

Page 109: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

109

> <s_m_entry_id>

7724

> <s_m_entry_name>

cpd36

$$$$

cpd37

SciTegic09220911323D

34 35 0 0 0 0 999 V2000

1.7025 0.2347 0.8982 C 0 0

0.8422 0.3157 2.0056 C 0 0

-0.5493 0.3382 1.8152 C 0 0

-1.0925 0.2777 0.5187 C 0 0

-0.2254 0.1944 -0.6009 C 0 0

1.1672 0.1736 -0.4001 C 0 0

3.1817 0.2135 1.0995 C 0 0

1.2431 0.3620 3.0072 H 0 0

-1.1930 0.4010 2.6812 H 0 0

-2.8079 0.3118 0.3559 Cl 0 0

-0.8134 0.1155 -2.2193 Cl 0 0

1.8387 0.1121 -1.2459 H 0 0

4.9816 -3.0514 0.1034 C 0 0

4.4420 -2.1168 1.0056 C 0 0

5.2820 -1.4595 1.9247 C 0 0

6.6605 -1.7413 1.9397 C 0 0

7.1970 -2.6771 1.0376 C 0 0

6.3573 -3.3328 0.1181 C 0 0

4.3296 -3.5528 -0.5980 H 0 0

3.3836 -1.9076 0.9865 H 0 0

7.3118 -1.2414 2.6393 H 0 0

8.2562 -2.8877 1.0541 H 0 0

6.9263 -4.3232 -0.8340 C 0 0

3.7057 0.3230 2.4663 C 0 0

4.7099 -0.4661 2.8816 C 0 0

3.9357 0.1069 0.1625 O 0 0

8.2855 -3.9110 -1.3326 C 0 0

8.6782 -2.7743 -1.2028 O 0 0

8.9921 -4.8771 -1.9138 O 0 0

6.9899 -5.2974 -0.3513 H 0 0

6.2455 -4.4507 -1.6743 H 0 0

3.2309 1.0704 3.0851 H 0 0

5.0291 -0.3133 3.9010 H 0 0

9.8731 -4.6768 -2.2555 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

Page 110: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

110

7 26 2 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 25 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 23 1 0

23 27 1 0

23 30 1 0

23 31 1 0

24 25 2 0

24 32 1 0

25 33 1 0

27 28 2 0

27 29 1 0

29 34 1 0

M END

> <Name>

cpd37

> <Absolute Energy>

66.7549

> <Estimate>

4.50114

> <FitValue>

4.33093

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

28

0

0

17

3

0

Page 111: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

111

> <MappingID>

1

> <Pharmprint>

'10110'

> <Relative Energy>

21.9897

> <s_m_entry_id>

7709

> <s_m_entry_name>

cpd37

$$$$

cpd38

SciTegic09220911323D

28 29 0 0 0 0 999 V2000

1.1614 -1.2116 1.3668 C 0 0

0.2735 -1.3320 0.2814 C 0 0

-0.6738 -0.3244 0.0310 C 0 0

-0.7366 0.8050 0.8658 C 0 0

0.1489 0.9259 1.9507 C 0 0

1.0974 -0.0814 2.2018 C 0 0

2.1673 -2.2814 1.6322 C 0 0

0.3145 -2.1968 -0.3660 H 0 0

-1.3542 -0.4169 -0.8006 H 0 0

-1.4656 1.5796 0.6739 H 0 0

0.1004 1.7952 2.5923 H 0 0

1.7739 0.0207 3.0377 H 0 0

5.8377 -1.0727 0.6802 C 0 0

4.6513 -1.7669 0.3897 C 0 0

4.5982 -3.1653 0.5356 C 0 0

5.7367 -3.8678 0.9751 C 0 0

6.9236 -3.1715 1.2645 C 0 0

6.9738 -1.7745 1.1181 C 0 0

5.8768 0.0006 0.5679 H 0 0

3.7818 -1.2177 0.0550 H 0 0

5.7071 -4.9409 1.0900 H 0 0

7.7965 -3.7122 1.6015 H 0 0

7.8864 -1.2418 1.3397 H 0 0

2.1856 -3.4644 0.7605 C 0 0

3.3379 -3.9034 0.2277 C 0 0

2.9547 -2.1806 2.5446 O 0 0

1.3078 -4.0360 0.5033 H 0 0

3.4292 -4.7620 -0.4197 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

Page 112: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

112

5 11 1 0

6 12 1 0

7 24 1 0

7 26 2 0

13 14 2 0

13 18 1 0

13 19 1 0

14 15 1 0

14 20 1 0

15 16 2 0

15 25 1 0

16 17 1 0

16 21 1 0

17 18 2 0

17 22 1 0

18 23 1 0

24 25 2 0

24 27 1 0

25 28 1 0

M END

> <Name>

cpd38

> <Absolute Energy>

42.538

> <Estimate>

160.068

> <FitValue>

2.93985

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

0

18

4

0

> <MappingID>

1

> <Pharmprint>

Page 113: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

113

'00110'

> <Relative Energy>

1.38725

> <s_m_entry_id>

7744

> <s_m_entry_name>

cpd38

$$$$

cpd39

SciTegic09220911323D

59 63 0 0 0 0 999 V2000

4.4398 2.7014 4.8605 C 0 0

3.6630 1.9070 3.9809 C 0 0

4.1668 0.6938 3.5325 C 0 0

5.4405 0.2186 3.9288 C 0 0

6.2190 1.0085 4.8079 C 0 0

5.7196 2.2516 5.2718 C 0 0

4.0605 3.6481 5.2148 H 0 0

5.8234 -0.7288 3.5743 H 0 0

7.1927 0.6660 5.1219 H 0 0

6.3137 2.8549 5.9424 H 0 0

2.1169 2.3752 3.4355 S 0 0

2.1398 0.8634 2.5562 C 0 0

3.2893 0.0425 2.6806 C 0 0

-1.3199 -0.0493 0.1787 C 0 0

-1.4751 0.5085 1.4590 C 0 0

-0.3441 0.8076 2.2373 C 0 0

0.9463 0.5477 1.7362 C 0 0

1.0985 -0.0120 0.4518 C 0 0

-0.0342 -0.3092 -0.3251 C 0 0

-2.1912 -0.2792 -0.4197 H 0 0

-2.4643 0.7091 1.8437 H 0 0

-0.4775 1.2375 3.2195 H 0 0

2.0805 -0.2186 0.0531 H 0 0

0.0837 -0.7397 -1.3083 H 0 0

3.5064 -1.2667 2.0224 C 0 0

2.5902 -2.0562 2.0525 O 0 0

7.2213 -2.2594 0.0767 C 0 0

6.3807 -3.2800 0.5585 C 0 0

5.1696 -2.9581 1.1938 C 0 0

4.7933 -1.6112 1.3504 C 0 0

5.6323 -0.5892 0.8690 C 0 0

6.8439 -0.9153 0.2342 C 0 0

8.3566 -2.5615 -0.5178 O 0 0

6.6652 -4.3144 0.4403 H 0 0

4.5319 -3.7495 1.5573 H 0 0

5.3532 0.4494 0.9852 H 0 0

7.4857 -0.1269 -0.1320 H 0 0

8.5220 -2.1836 -1.8762 C 0 0

9.9010 -2.6278 -2.3663 C 0 0

10.1901 -2.0439 -3.6709 N 0 0

11.6325 -2.0477 -3.9523 C 0 0

11.9394 -1.3425 -5.2830 C 0 0

Page 114: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

114

11.1303 -1.9461 -6.4387 C 0 0

9.6394 -1.9947 -6.0858 C 0 0

9.4033 -2.6839 -4.7326 C 0 0

8.4187 -1.1006 -1.9429 H 0 0

7.7338 -2.6591 -2.4606 H 0 0

9.9535 -3.7141 -2.4359 H 0 0

10.6754 -2.3352 -1.6577 H 0 0

11.9938 -3.0776 -3.9845 H 0 0

12.1645 -1.5499 -3.1396 H 0 0

11.7046 -0.2810 -5.1935 H 0 0

13.0043 -1.4061 -5.5027 H 0 0

11.4860 -2.9578 -6.6386 H 0 0

11.2859 -1.3700 -7.3512 H 0 0

9.0879 -2.5134 -6.8716 H 0 0

9.2416 -0.9790 -6.0495 H 0 0

8.3431 -2.6423 -4.4772 H 0 0

9.6730 -3.7394 -4.8001 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 11 1 0

3 4 2 0

3 13 1 0

4 5 1 0

4 8 1 0

5 6 2 0

5 9 1 0

6 10 1 0

11 12 1 0

12 13 2 0

12 17 1 0

13 25 1 0

14 15 2 0

14 19 1 0

14 20 1 0

15 16 1 0

15 21 1 0

16 17 2 0

16 22 1 0

17 18 1 0

18 19 2 0

18 23 1 0

19 24 1 0

25 26 2 0

25 30 1 0

27 28 2 0

27 32 1 0

27 33 1 0

28 29 1 0

28 34 1 0

29 30 2 0

29 35 1 0

30 31 1 0

31 32 2 0

31 36 1 0

32 37 1 0

33 38 1 0

Page 115: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

115

38 39 1 0

38 46 1 0

38 47 1 0

39 40 1 0

39 48 1 0

39 49 1 0

40 41 1 0

40 45 1 0

41 42 1 0

41 50 1 0

41 51 1 0

42 43 1 0

42 52 1 0

42 53 1 0

43 44 1 0

43 54 1 0

43 55 1 0

44 45 1 0

44 56 1 0

44 57 1 0

45 58 1 0

45 59 1 0

M END

> <Name>

cpd39

> <Absolute Energy>

152.902

> <Estimate>

0.891669

> <FitValue>

5.38786

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

33

0

0

28

16

1

Page 116: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

116

> <MappingID>

1

> <Pharmprint>

'10111'

> <Relative Energy>

2.73632

> <s_m_entry_id>

7703

> <s_m_entry_name>

cpd39

$$$$

cpd40

SciTegic09220911323D

56 59 0 0 0 0 999 V2000

-0.1560 1.7471 1.4005 C 0 0

1.1098 1.2274 1.7645 C 0 0

1.3686 -0.1257 1.5766 C 0 0

0.4057 -1.0074 1.0314 C 0 0

-0.8609 -0.4889 0.6669 C 0 0

-1.1423 0.8880 0.8501 C 0 0

-0.3719 2.7964 1.5381 H 0 0

0.6172 -2.0575 0.8884 H 0 0

-1.6110 -1.1453 0.2482 H 0 0

-2.3415 1.3779 0.5075 O 0 0

2.3458 2.1997 2.4314 S 0 0

3.2479 0.7074 2.4565 C 0 0

2.6458 -0.4806 1.9813 C 0 0

3.2619 -1.8262 1.9318 C 0 0

2.6968 -2.7695 2.4311 O 0 0

7.0777 -2.2998 -0.0149 C 0 0

6.7833 -3.0306 1.1501 C 0 0

5.5404 -2.8765 1.7865 C 0 0

4.5832 -1.9897 1.2580 C 0 0

4.8753 -1.2600 0.0915 C 0 0

6.1198 -1.4152 -0.5414 C 0 0

8.2458 -2.4459 -0.6114 O 0 0

7.5138 -3.7121 1.5601 H 0 0

5.3244 -3.4425 2.6807 H 0 0

4.1491 -0.5757 -0.3221 H 0 0

6.3412 -0.8517 -1.4367 H 0 0

8.3944 -1.9205 -1.9205 C 0 0

9.8139 -2.1958 -2.4209 C 0 0

10.0637 -1.4755 -3.6641 N 0 0

11.5031 -1.3299 -3.9176 C 0 0

11.7604 -0.4861 -5.1759 C 0 0

11.0199 -1.0497 -6.3952 C 0 0

9.5360 -1.2576 -6.0742 C 0 0

9.3484 -2.0845 -4.7915 C 0 0

8.1992 -0.8479 -1.8839 H 0 0

7.6597 -2.4017 -2.5655 H 0 0

9.9655 -3.2621 -2.5834 H 0 0

10.5491 -1.8986 -1.6743 H 0 0

Page 117: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

117

11.9548 -2.3171 -4.0334 H 0 0

11.9817 -0.8617 -3.0562 H 0 0

11.4342 0.5400 -4.9993 H 0 0

12.8300 -0.4364 -5.3822 H 0 0

11.4651 -2.0041 -6.6763 H 0 0

11.1341 -0.3853 -7.2508 H 0 0

9.0396 -1.7510 -6.9129 H 0 0

9.0497 -0.2880 -5.9571 H 0 0

8.2853 -2.1580 -4.5536 H 0 0

9.7100 -3.1015 -4.9466 H 0 0

4.6594 0.7767 3.0012 C 0 0

4.7238 1.6285 4.2696 C 0 0

-2.5241 2.3171 0.6377 H 0 0

5.0245 -0.2318 3.1932 H 0 0

5.3244 1.1765 2.2346 H 0 0

5.7249 1.6064 4.6989 H 0 0

4.4506 2.6603 4.0536 H 0 0

4.0299 1.2507 5.0208 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 11 1 0

3 4 2 0

3 13 1 0

4 5 1 0

4 8 1 0

5 6 2 0

5 9 1 0

6 10 1 0

10 51 1 0

11 12 1 0

12 13 2 0

12 49 1 0

13 14 1 0

14 15 2 0

14 19 1 0

16 17 2 0

16 21 1 0

16 22 1 0

17 18 1 0

17 23 1 0

18 19 2 0

18 24 1 0

19 20 1 0

20 21 2 0

20 25 1 0

21 26 1 0

22 27 1 0

27 28 1 0

27 35 1 0

27 36 1 0

28 29 1 0

28 37 1 0

28 38 1 0

29 30 1 0

29 34 1 0

30 31 1 0

Page 118: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

118

30 39 1 0

30 40 1 0

31 32 1 0

31 41 1 0

31 42 1 0

32 33 1 0

32 43 1 0

32 44 1 0

33 34 1 0

33 45 1 0

33 46 1 0

34 47 1 0

34 48 1 0

49 50 1 0

49 52 1 0

49 53 1 0

50 54 1 0

50 55 1 0

50 56 1 0

M END

> <Name>

cpd40

> <Absolute Energy>

137.709

> <Estimate>

0.00778949

> <FitValue>

7.13849

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

22

0

10

0

17

5

50

> <MappingID>

1

Page 119: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

119

> <Pharmprint>

'11111'

> <Relative Energy>

1.54145

> <s_m_entry_id>

569

> <s_m_entry_name>

cpd40

$$$$

cpd41

SciTegic09220911323D

67 71 0 0 0 0 999 V2000

5.9204 -2.2898 -0.7549 C 0 0

4.8297 -1.8007 0.0057 C 0 0

4.9677 -1.6483 1.3751 C 0 0

6.1709 -1.9699 2.0516 C 0 0

7.2627 -2.4604 1.2947 C 0 0

7.1395 -2.6203 -0.1070 C 0 0

5.8249 -2.4128 -1.8221 H 0 0

6.2658 -1.8506 3.1213 H 0 0

8.1891 -2.7129 1.7900 H 0 0

8.1739 -3.0833 -0.8218 O 0 0

3.3345 -1.3792 -0.6932 S 0 0

2.8592 -0.9753 0.9397 C 0 0

3.8159 -1.1581 1.9716 C 0 0

-1.1389 0.5026 1.4911 C 0 0

-0.9088 -0.6175 0.6750 C 0 0

0.3994 -1.1036 0.4933 C 0 0

1.4793 -0.4648 1.1308 C 0 0

1.2486 0.6582 1.9464 C 0 0

-0.0585 1.1401 2.1265 C 0 0

-2.5203 1.0143 1.6807 C 0 0

-1.7345 -1.1109 0.1826 H 0 0

0.5605 -1.9656 -0.1373 H 0 0

2.0694 1.1577 2.4432 H 0 0

-0.2298 2.0026 2.7557 H 0 0

3.6152 -0.8787 3.4115 C 0 0

3.0090 -1.6634 4.1026 O 0 0

5.2134 2.7637 5.0731 C 0 0

5.0321 1.6347 5.8900 C 0 0

4.5093 0.4458 5.3501 C 0 0

4.1695 0.3828 3.9871 C 0 0

4.3500 1.5125 3.1663 C 0 0

4.8723 2.6982 3.7089 C 0 0

5.7036 3.8761 5.5790 O 0 0

5.2921 1.6751 6.9373 H 0 0

4.3738 -0.4158 5.9877 H 0 0

4.0910 1.4741 2.1178 H 0 0

5.0098 3.5626 3.0779 H 0 0

6.5850 3.7719 6.6874 C 0 0

7.7880 2.9102 6.3025 C 0 0

8.9535 3.7472 6.0298 N 0 0

Page 120: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

120

8.8396 4.4865 4.7569 C 0 0

9.6036 3.8212 3.5904 C 0 0

9.6648 2.2960 3.7374 C 0 0

10.3274 1.8963 5.0709 C 0 0

10.2042 2.9904 6.1543 C 0 0

6.9054 4.7763 6.9641 H 0 0

6.0402 3.3249 7.5176 H 0 0

8.0258 2.2043 7.1003 H 0 0

7.5634 2.3029 5.4259 H 0 0

9.2223 5.4973 4.9021 H 0 0

7.7877 4.6031 4.4919 H 0 0

9.1454 4.0925 2.6390 H 0 0

10.6236 4.2079 3.5600 H 0 0

8.6484 1.9014 3.7079 H 0 0

10.1946 1.8425 2.9003 H 0 0

11.3847 1.6826 4.9112 H 0 0

9.8811 0.9668 5.4235 H 0 0

10.2767 2.5552 7.1516 H 0 0

11.0386 3.6888 6.0665 H 0 0

8.0534 -3.0964 -2.2376 C 0 0

-3.0114 1.5108 0.4579 O 0 0

-3.1688 0.1976 2.0013 H 0 0

-2.5109 1.8352 2.3987 H 0 0

8.9575 -3.5382 -2.6526 H 0 0

7.8133 -2.0873 -2.5690 H 0 0

7.2151 -3.7446 -2.5032 H 0 0

-3.1458 0.7469 -0.1284 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 11 1 0

3 4 2 0

3 13 1 0

4 5 1 0

4 8 1 0

5 6 2 0

5 9 1 0

6 10 1 0

10 60 1 0

11 12 1 0

12 13 2 0

12 17 1 0

13 25 1 0

14 15 2 0

14 19 1 0

14 20 1 0

15 16 1 0

15 21 1 0

16 17 2 0

16 22 1 0

17 18 1 0

18 19 2 0

18 23 1 0

19 24 1 0

20 61 1 0

20 62 1 0

20 63 1 0

Page 121: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

121

25 26 2 0

25 30 1 0

27 28 2 0

27 32 1 0

27 33 1 0

28 29 1 0

28 34 1 0

29 30 2 0

29 35 1 0

30 31 1 0

31 32 2 0

31 36 1 0

32 37 1 0

33 38 1 0

38 39 1 0

38 46 1 0

38 47 1 0

39 40 1 0

39 48 1 0

39 49 1 0

40 41 1 0

40 45 1 0

41 42 1 0

41 50 1 0

41 51 1 0

42 43 1 0

42 52 1 0

42 53 1 0

43 44 1 0

43 54 1 0

43 55 1 0

44 45 1 0

44 56 1 0

44 57 1 0

45 58 1 0

45 59 1 0

60 64 1 0

60 65 1 0

60 66 1 0

61 67 1 0

M END

> <Name>

cpd41

> <Absolute Energy>

181.078

> <Estimate>

0.1103781

> <FitValue>

6.97393

> <HBA_1>

1

> <HBD_2>

1

Page 122: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

122

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

10

0

61

0

5

15

32

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

21.9744

> <s_m_entry_id>

7715

> <s_m_entry_name>

cpd41

$$$$

cpd42

SciTegic09220911323D

63 67 0 0 0 0 999 V2000

-0.3437 1.6699 1.2111 C 0 0

0.8938 1.3068 1.7962 C 0 0

1.2902 -0.0218 1.7860 C 0 0

0.4944 -1.0398 1.2023 C 0 0

-0.7433 -0.6806 0.6146 C 0 0

-1.1631 0.6738 0.6198 C 0 0

-0.6631 2.7012 1.2120 H 0 0

0.8137 -2.0700 1.1978 H 0 0

-1.3664 -1.4400 0.1660 H 0 0

-2.3375 1.0117 0.0668 O 0 0

1.9356 2.4399 2.5259 S 0 0

2.9653 1.0615 2.8386 C 0 0

2.5181 -0.2111 2.3947 C 0 0

6.6619 1.8249 4.8920 C 0 0

5.5632 1.2938 5.5925 C 0 0

4.3558 1.0445 4.9206 C 0 0

4.2410 1.3236 3.5460 C 0 0

5.3390 1.8558 2.8471 C 0 0

6.5499 2.1046 3.5183 C 0 0

Page 123: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

123

7.9403 2.0894 5.6029 C 0 0

5.6468 1.0776 6.6476 H 0 0

3.5202 0.6353 5.4728 H 0 0

5.2671 2.0760 1.7894 H 0 0

7.3889 2.5142 2.9754 H 0 0

3.2355 -1.4965 2.5614 C 0 0

2.8299 -2.3204 3.3456 O 0 0

6.7706 -2.2325 0.2054 C 0 0

5.8396 -1.2588 -0.2013 C 0 0

4.6865 -1.0175 0.5653 C 0 0

4.4596 -1.7513 1.7438 C 0 0

5.3892 -2.7236 2.1520 C 0 0

6.5419 -2.9635 1.3838 C 0 0

7.8506 -2.4557 -0.5142 O 0 0

6.0087 -0.6909 -1.1041 H 0 0

3.9799 -0.2670 0.2431 H 0 0

5.2243 -3.2921 3.0565 H 0 0

7.2521 -3.7115 1.7013 H 0 0

7.9116 -1.8952 -1.8189 C 0 0

8.2754 -0.4139 -1.7193 C 0 0

8.9034 0.0405 -2.9571 N 0 0

9.5519 1.3502 -2.8054 C 0 0

8.5197 2.4827 -2.6572 C 0 0

7.5107 2.4783 -3.8143 C 0 0

6.8933 1.0839 -3.9903 C 0 0

7.9812 -0.0013 -4.0993 C 0 0

6.9377 -2.0232 -2.2916 H 0 0

8.6631 -2.4410 -2.3886 H 0 0

8.9529 -0.2380 -0.8847 H 0 0

7.3900 0.1885 -1.5191 H 0 0

10.1783 1.5362 -3.6801 H 0 0

10.2219 1.3319 -1.9461 H 0 0

7.9876 2.3699 -1.7118 H 0 0

9.0260 3.4470 -2.6111 H 0 0

8.0164 2.7692 -4.7360 H 0 0

6.7287 3.2167 -3.6362 H 0 0

6.2588 1.0683 -4.8763 H 0 0

6.2411 0.8656 -3.1436 H 0 0

7.5261 -0.9890 -4.1717 H 0 0

8.5503 0.1411 -5.0194 H 0 0

8.5940 3.1322 4.9955 F 0 0

8.7283 0.9686 5.5589 F 0 0

7.6796 2.4125 6.9074 F 0 0

-2.8867 0.3247 -0.3330 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 11 1 0

3 4 2 0

3 13 1 0

4 5 1 0

4 8 1 0

5 6 2 0

5 9 1 0

6 10 1 0

10 63 1 0

11 12 1 0

Page 124: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

124

12 13 2 0

12 17 1 0

13 25 1 0

14 15 2 0

14 19 1 0

14 20 1 0

15 16 1 0

15 21 1 0

16 17 2 0

16 22 1 0

17 18 1 0

18 19 2 0

18 23 1 0

19 24 1 0

20 60 1 0

20 61 1 0

20 62 1 0

25 26 2 0

25 30 1 0

27 28 2 0

27 32 1 0

27 33 1 0

28 29 1 0

28 34 1 0

29 30 2 0

29 35 1 0

30 31 1 0

31 32 2 0

31 36 1 0

32 37 1 0

33 38 1 0

38 39 1 0

38 46 1 0

38 47 1 0

39 40 1 0

39 48 1 0

39 49 1 0

40 41 1 0

40 45 1 0

41 42 1 0

41 50 1 0

41 51 1 0

42 43 1 0

42 52 1 0

42 53 1 0

43 44 1 0

43 54 1 0

43 55 1 0

44 45 1 0

44 56 1 0

44 57 1 0

45 58 1 0

45 59 1 0

M END

> <Name>

cpd42

> <Absolute Energy>

Page 125: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

125

171.311

> <Estimate>

0.4810345

> <FitValue>

6.70707

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

33

0

10

0

32

6

16

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

15.9494

> <s_m_entry_id>

7722

> <s_m_entry_name>

cpd42

$$$$

cpd43

SciTegic09220911323D

61 65 0 0 0 0 999 V2000

4.7987 2.6564 4.9122 C 0 0

3.9150 1.9334 4.0658 C 0 0

4.2756 0.6916 3.5646 C 0 0

5.5209 0.0918 3.8712 C 0 0

6.4141 0.7923 4.7096 C 0 0

6.0519 2.0625 5.2239 C 0 0

Page 126: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

126

4.5921 3.8577 5.4693 O 0 0

5.7957 -0.8772 3.4778 H 0 0

7.3721 0.3615 4.9606 H 0 0

6.7454 2.5882 5.8650 H 0 0

2.3867 2.5476 3.6252 S 0 0

2.2173 1.0613 2.7192 C 0 0

3.2936 0.1382 2.7582 C 0 0

-1.4539 0.5232 0.5475 C 0 0

-1.4821 0.9591 1.8851 C 0 0

-0.2813 1.1347 2.5954 C 0 0

0.9518 0.8771 1.9698 C 0 0

0.9807 0.4400 0.6323 C 0 0

-0.2215 0.2653 -0.0758 C 0 0

-2.5798 0.3579 -0.1158 O 0 0

-2.4264 1.1595 2.3690 H 0 0

-0.3212 1.4689 3.6222 H 0 0

1.9196 0.2380 0.1374 H 0 0

-0.1944 -0.0698 -1.1017 H 0 0

3.3494 -1.1700 2.0651 C 0 0

2.3846 -1.8997 2.0671 O 0 0

6.9853 -2.3128 0.0525 C 0 0

6.2920 -1.1568 -0.3429 C 0 0

5.1062 -0.7830 0.3106 C 0 0

4.6091 -1.5666 1.3683 C 0 0

5.3000 -2.7230 1.7677 C 0 0

6.4864 -3.0941 1.1099 C 0 0

8.0982 -2.6625 -0.5592 O 0 0

6.6701 -0.5509 -1.1548 H 0 0

4.5813 0.1092 -0.0036 H 0 0

4.9266 -3.3302 2.5780 H 0 0

7.0141 -3.9838 1.4207 H 0 0

8.2070 -2.3881 -1.9499 C 0 0

8.8291 -1.0063 -2.1470 C 0 0

9.7951 -0.7249 -1.0957 N 0 0

10.1787 0.6926 -1.0820 C 0 0

11.1295 1.0011 0.0879 C 0 0

12.3535 0.0795 0.0717 C 0 0

11.9194 -1.3887 -0.0004 C 0 0

10.9509 -1.6301 -1.1699 C 0 0

7.2080 -2.4274 -2.3855 H 0 0

8.8301 -3.1612 -2.4025 H 0 0

8.0595 -0.2341 -2.1525 H 0 0

9.3203 -0.9421 -3.1203 H 0 0

10.6596 0.9491 -2.0291 H 0 0

9.2849 1.3129 -1.0005 H 0 0

11.4457 2.0435 0.0453 H 0 0

10.5949 0.8794 1.0297 H 0 0

12.9682 0.2510 0.9545 H 0 0

12.9743 0.3162 -0.7941 H 0 0

12.7948 -2.0314 -0.1007 H 0 0

11.4347 -1.6690 0.9365 H 0 0

11.4693 -1.4802 -2.1199 H 0 0

10.6069 -2.6639 -1.1546 H 0 0

5.2779 4.2414 6.0303 H 0 0

-3.4211 0.5396 0.3227 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

Page 127: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

127

2 3 1 0

2 11 1 0

3 4 2 0

3 13 1 0

4 5 1 0

4 8 1 0

5 6 2 0

5 9 1 0

6 10 1 0

7 60 1 0

11 12 1 0

12 13 2 0

12 17 1 0

13 25 1 0

14 15 2 0

14 19 1 0

14 20 1 0

15 16 1 0

15 21 1 0

16 17 2 0

16 22 1 0

17 18 1 0

18 19 2 0

18 23 1 0

19 24 1 0

20 61 1 0

25 26 2 0

25 30 1 0

27 28 2 0

27 32 1 0

27 33 1 0

28 29 1 0

28 34 1 0

29 30 2 0

29 35 1 0

30 31 1 0

31 32 2 0

31 36 1 0

32 37 1 0

33 38 1 0

38 39 1 0

38 46 1 0

38 47 1 0

39 40 1 0

39 48 1 0

39 49 1 0

40 41 1 0

40 45 1 0

41 42 1 0

41 50 1 0

41 51 1 0

42 43 1 0

42 52 1 0

42 53 1 0

43 44 1 0

43 54 1 0

43 55 1 0

44 45 1 0

Page 128: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

128

44 56 1 0

44 57 1 0

45 58 1 0

45 59 1 0

M END

> <Name>

cpd43

> <Absolute Energy>

167.412

> <Estimate>

0.229933

> <FitValue>

5.91628

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

33

0

20

0

32

19

2

> <MappingID>

1

> <Pharmprint>

'11111'

> <Relative Energy>

13.913

> <s_m_entry_id>

7710

> <s_m_entry_name>

cpd43

$$$$

cpd44

Page 129: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

129

SciTegic09220911323D

29 31 0 0 0 0 999 V2000

-1.5500 0.7598 0.9432 C 0 0

-1.2159 0.2022 -0.3032 C 0 0

0.0923 -0.2507 -0.5460 C 0 0

1.0719 -0.1476 0.4563 C 0 0

0.7398 0.4109 1.7048 C 0 0

-0.5703 0.8629 1.9456 C 0 0

-2.7770 1.1851 1.1721 O 0 0

-1.9660 0.1199 -1.0764 H 0 0

0.3383 -0.6784 -1.5088 H 0 0

2.4663 -0.6291 0.1971 C 0 0

1.4851 0.4959 2.4818 H 0 0

-0.8193 1.2916 2.9050 H 0 0

3.0186 -0.4449 -1.0231 C 0 0

4.2679 -0.8580 -1.3198 O 0 0

5.0687 -1.4822 -0.4289 C 0 0

4.6122 -1.7371 0.8906 C 0 0

3.2388 -1.3060 1.2713 C 0 0

2.7103 -1.4564 2.3512 O 0 0

5.4534 -2.3872 1.8247 C 0 0

6.7534 -2.7883 1.4375 C 0 0

7.2111 -2.5396 0.1221 C 0 0

6.3686 -1.8884 -0.8103 C 0 0

8.4420 -2.9219 -0.2415 O 0 0

-2.9930 1.5670 2.0322 H 0 0

2.4289 0.0527 -1.7811 H 0 0

5.1114 -2.5830 2.8315 H 0 0

7.3974 -3.2829 2.1496 H 0 0

6.7188 -1.6985 -1.8153 H 0 0

8.7452 -2.7475 -1.1427 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

10 13 2 0

10 17 1 0

13 14 1 0

13 25 1 0

14 15 1 0

15 16 2 0

15 22 1 0

16 17 1 0

16 19 1 0

17 18 2 0

19 20 2 0

19 26 1 0

20 21 1 0

Page 130: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

130

20 27 1 0

21 22 2 0

21 23 1 0

22 28 1 0

23 29 1 0

M END

> <Name>

cpd44

> <Absolute Energy>

35.4295

> <Estimate>

0.375049

> <FitValue>

1.55091

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

23

0

7

0

20

6

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

-0.0241668

> <s_m_entry_id>

7741

> <s_m_entry_name>

cpd44

$$$$

Page 131: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

131

cpd45

SciTegic09220911323D

30 32 0 0 0 0 999 V2000

-1.4189 0.7061 0.8944 C 0 0

-0.4471 1.0136 1.8603 C 0 0

0.8682 0.5382 1.7163 C 0 0

1.2144 -0.2487 0.6046 C 0 0

0.2406 -0.5605 -0.3641 C 0 0

-1.0715 -0.0823 -0.2186 C 0 0

-2.6510 1.1537 1.0290 O 0 0

-0.7060 1.6179 2.7160 H 0 0

1.6085 0.7815 2.4659 H 0 0

2.6157 -0.7572 0.4501 C 0 0

0.4968 -1.1646 -1.2217 H 0 0

-1.8143 -0.3219 -0.9628 H 0 0

3.3030 -1.1607 1.5448 C 0 0

4.5665 -1.6256 1.4718 O 0 0

5.2471 -1.7339 0.3105 C 0 0

4.6431 -1.3488 -0.9149 C 0 0

3.2480 -0.8212 -0.8933 C 0 0

2.5995 -0.4516 -1.8455 O 0 0

5.3638 -1.4677 -2.1337 C 0 0

6.6865 -1.9706 -2.1179 C 0 0

7.2889 -2.3502 -0.8969 C 0 0

6.5712 -2.2308 0.3152 C 0 0

8.5446 -2.8234 -0.8888 O 0 0

-3.3115 0.9337 0.3576 H 0 0

2.8088 -1.1008 2.5055 H 0 0

4.8092 -1.1131 -3.3024 O 0 0

7.2361 -2.0631 -3.0439 H 0 0

7.0361 -2.5225 1.2468 H 0 0

8.9476 -3.0798 -0.0501 H 0 0

5.3216 -1.2048 -4.1144 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 24 1 0

10 13 2 0

10 17 1 0

13 14 1 0

13 25 1 0

14 15 1 0

15 16 2 0

15 22 1 0

16 17 1 0

16 19 1 0

17 18 2 0

19 20 2 0

Page 132: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

132

19 26 1 0

20 21 1 0

20 27 1 0

21 22 2 0

21 23 1 0

22 28 1 0

23 29 1 0

26 30 1 0

M END

> <Name>

cpd45

> <Absolute Energy>

36.245

> <Estimate>

12.20947

> <FitValue>

4.31321

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

23

0

7

0

0

2

0

> <MappingID>

1

> <Pharmprint>

'11010'

> <Relative Energy>

-0.0122015

> <s_m_entry_id>

7714

> <s_m_entry_name>

Page 133: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

133

cpd45

$$$$

cpd46

SciTegic09220911323D

37 38 0 0 1 0 999 V2000

0.3229 0.3779 2.2997 C 0 0

-0.4343 -0.7848 2.0755 C 0 0

-1.1688 -0.9306 0.8864 C 0 0

-1.1498 0.0885 -0.0817 C 0 0

-0.3915 1.2533 0.1426 C 0 0

0.3430 1.3982 1.3307 C 0 0

1.1048 0.5328 3.5640 C 0 0 2 0 0 0

-0.4531 -1.5713 2.8164 H 0 0

-1.7488 -1.8276 0.7230 H 0 0

-1.9269 -0.0638 -1.3396 C 0 0

-0.3727 2.0388 -0.5993 H 0 0

0.9230 2.2941 1.4950 H 0 0

2.3144 1.5008 3.4391 C 0 0

3.1787 1.0239 4.6214 C 0 0 1 0 0 0

3.1698 -0.4909 4.4346 C 0 0

1.7217 -0.7988 4.0490 C 0 0

3.0494 1.3230 2.1032 C 0 0

1.9236 2.9702 3.6294 C 0 0

0.1531 1.0088 4.6662 C 0 0

4.9882 1.7209 4.6669 Br 0 0

-1.8089 0.8292 -1.9518 H 0 0

-1.6120 -0.9722 -1.8523 H 0 0

-2.9871 -0.1670 -1.1019 H 0 0

2.7158 1.2838 5.5670 H 0 0

3.8283 -0.7907 3.6270 H 0 0

3.4781 -1.0186 5.3257 H 0 0

1.7072 -1.5782 3.2915 H 0 0

1.1873 -1.2044 4.9028 H 0 0

3.1624 0.2719 1.8385 H 0 0

4.0441 1.7644 2.1494 H 0 0

2.5051 1.8132 1.2951 H 0 0

0.8681 3.1423 3.4115 H 0 0

2.5101 3.6116 2.9720 H 0 0

2.1080 3.2887 4.6552 H 0 0

-0.5584 0.2361 4.9526 H 0 0

-0.4148 1.8802 4.3364 H 0 0

0.7105 1.2950 5.5596 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

Page 134: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

134

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 24 1 0

15 16 1 0

15 25 1 0

15 26 1 0

16 27 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 32 1 0

18 33 1 0

18 34 1 0

19 35 1 0

19 36 1 0

19 37 1 0

M END

> <Name>

cpd46

> <Absolute Energy>

56.3291

> <Estimate>

159.846

> <FitValue>

2.83259

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

0

0

6

20

Page 135: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

135

> <MappingID>

1

> <Pharmprint>

'00011'

> <Relative Energy>

16.9557

> <s_m_entry_id>

7706

> <s_m_entry_name>

cpd46

$$$$

cpd47

SciTegic09220911323D

37 38 0 0 1 0 999 V2000

0.3024 0.4589 2.6821 C 0 0

1.0267 -0.4550 1.8943 C 0 0

0.6879 -0.6424 0.5441 C 0 0

-0.3746 0.0816 -0.0242 C 0 0

-1.0991 0.9964 0.7635 C 0 0

-0.7595 1.1831 2.1150 C 0 0

0.6623 0.6585 4.1191 C 0 0 2 0 0 0

1.8454 -1.0149 2.3235 H 0 0

1.2481 -1.3447 -0.0566 H 0 0

-0.7324 -0.1158 -1.4540 C 0 0

-1.9172 1.5554 0.3334 H 0 0

-1.3201 1.8862 2.7134 H 0 0

1.7978 1.6958 4.3091 C 0 0

3.0412 0.8353 4.0184 C 0 0 1 0 0 0

2.7696 -0.4085 4.8701 C 0 0

1.2587 -0.6306 4.7208 C 0 0

1.8306 2.1970 5.7643 C 0 0

1.7122 2.8948 3.3563 C 0 0

-0.5978 1.0772 4.8752 C 0 0

3.1023 0.5596 2.9734 H 0 0

-1.6155 0.4745 -1.6926 H 0 0

0.1232 0.1321 -2.0793 H 0 0

-0.9776 -1.1643 -1.6228 H 0 0

4.7383 1.6689 4.4506 Br 0 0

3.3516 -1.2653 4.5599 H 0 0

2.9940 -0.2251 5.9146 H 0 0

1.0713 -1.5036 4.1081 H 0 0

0.8305 -0.8523 5.6883 H 0 0

1.8322 1.3732 6.4764 H 0 0

0.9590 2.8175 5.9775 H 0 0

2.7214 2.7971 5.9454 H 0 0

1.7824 2.5900 2.3120 H 0 0

2.5187 3.6010 3.5510 H 0 0

0.7694 3.4242 3.4875 H 0 0

-1.4616 0.4796 4.5862 H 0 0

-0.8345 2.1239 4.6805 H 0 0

-0.4562 0.9631 5.9494 H 0 0

Page 136: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

136

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 24 1 0

15 16 1 0

15 25 1 0

15 26 1 0

16 27 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 32 1 0

18 33 1 0

18 34 1 0

19 35 1 0

19 36 1 0

19 37 1 0

M END

> <Name>

cpd47

> <Absolute Energy>

38.9629

> <Estimate>

160.286

> <FitValue>

2.93558

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

Page 137: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

137

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

0

0

4

24

> <MappingID>

1

> <Pharmprint>

'00011'

> <Relative Energy>

0

> <s_m_entry_id>

3

> <s_m_entry_name>

cpd47

$$$$

cpd48

SciTegic09220911323D

41 42 0 0 1 0 999 V2000

7.7419 -0.6283 0.8970 C 0 0

7.2180 -1.8956 0.5797 C 0 0

6.0531 -2.3446 1.2236 C 0 0

5.4063 -1.5418 2.1782 C 0 0

5.9318 -0.2674 2.4947 C 0 0

7.0978 0.1823 1.8491 C 0 0

8.9797 -0.1362 0.2234 C 0 0 2 0 0 0

7.8122 -2.6623 -0.3111 O 0 0

5.6530 -3.3189 0.9798 H 0 0

4.1736 -2.0628 2.8344 C 0 0

5.1033 0.8544 3.7695 Br 0 0

7.5120 1.1552 2.0797 H 0 0

8.9025 1.3474 -0.2674 C 0 0

9.4517 1.3346 -1.7179 C 0 0 1 0 0 0

10.2004 0.0089 -1.8233 C 0 0

9.2777 -0.9288 -1.0566 C 0 0

7.4952 1.9592 -0.2563 C 0 0

9.8190 2.2568 0.5570 C 0 0

10.1715 -0.3986 1.1523 C 0 0

8.3765 1.3427 -2.8105 C 0 0

3.7312 -1.3829 3.5611 H 0 0

4.4029 -2.9967 3.3475 H 0 0

3.4213 -2.2755 2.0751 H 0 0

Page 138: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

138

10.1241 2.1596 -1.9086 H 0 0

11.1674 0.0749 -1.3477 H 0 0

10.3589 -0.3104 -2.8436 H 0 0

8.3802 -1.1163 -1.6330 H 0 0

9.7390 -1.8892 -0.8676 H 0 0

6.7386 1.2447 -0.5817 H 0 0

7.4439 2.8231 -0.9189 H 0 0

7.2283 2.2929 0.7490 H 0 0

10.8695 1.9926 0.4367 H 0 0

9.5771 2.1858 1.6176 H 0 0

9.7012 3.2980 0.2575 H 0 0

10.3010 -1.4608 1.3547 H 0 0

10.0323 0.1096 2.1083 H 0 0

11.0951 -0.0260 0.7090 H 0 0

7.6030 -3.6051 -0.3384 H 0 0

8.7478 0.8728 -3.7206 H 0 0

7.4837 0.8148 -2.4750 H 0 0

8.0861 2.3644 -3.0573 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 38 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 24 1 0

15 16 1 0

15 25 1 0

15 26 1 0

16 27 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 32 1 0

18 33 1 0

18 34 1 0

19 35 1 0

19 36 1 0

19 37 1 0

20 39 1 0

Page 139: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

139

20 40 1 0

20 41 1 0

M END

> <Name>

cpd48

> <Absolute Energy>

58.4324

> <Estimate>

160.487

> <FitValue>

3.06693

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

8

0

0

3

0

11

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

1.20895e-11

> <s_m_entry_id>

13

> <s_m_entry_name>

cpd48

$$$$

cpd49

SciTegic09220911323D

40 41 0 0 1 0 999 V2000

Page 140: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

140

6.7095 -0.9964 1.7768 C 0 0

7.6364 -1.9620 1.3434 C 0 0

7.1900 -3.1222 0.6865 C 0 0

5.8173 -3.3201 0.4617 C 0 0

4.8904 -2.3553 0.8957 C 0 0

5.3350 -1.1960 1.5516 C 0 0

7.1822 0.2355 2.4739 C 0 0 2 0 0 0

8.6936 -1.8151 1.5123 H 0 0

7.9077 -3.8582 0.3559 H 0 0

5.3443 -4.5460 -0.2324 C 0 0

3.8331 -2.5014 0.7262 H 0 0

4.6173 -0.4600 1.8822 H 0 0

6.9188 0.2470 4.0167 C 0 0

6.3186 1.6445 4.3222 C 0 0 1 0 0 0

6.6702 2.4819 3.0962 C 0 0

6.4503 1.4849 1.9669 C 0 0

5.9657 -0.8442 4.5168 C 0 0

8.2261 0.1313 4.8060 C 0 0

8.6582 0.4534 2.1164 C 0 0

4.7940 1.6662 4.4704 C 0 0

4.2636 -4.6037 -0.3577 H 0 0

5.6625 -5.4261 0.3274 H 0 0

5.7976 -4.6009 -1.2224 H 0 0

6.7426 2.0868 5.2139 H 0 0

7.7021 2.8030 3.1338 H 0 0

6.0552 3.3649 2.9946 H 0 0

5.3920 1.3050 1.8374 H 0 0

6.8316 1.8510 1.0215 H 0 0

4.9971 -0.7995 4.0174 H 0 0

5.7931 -0.7446 5.5884 H 0 0

6.3850 -1.8343 4.3369 H 0 0

8.9181 0.9382 4.5686 H 0 0

8.7271 -0.8127 4.5869 H 0 0

8.0326 0.1638 5.8782 H 0 0

8.8308 0.3837 1.0429 H 0 0

9.2870 -0.2899 2.6053 H 0 0

8.9908 1.4404 2.4434 H 0 0

4.4308 2.6884 4.5711 H 0 0

4.3157 1.2027 3.6059 H 0 0

4.4829 1.1125 5.3585 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

Page 141: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

141

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 24 1 0

15 16 1 0

15 25 1 0

15 26 1 0

16 27 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 32 1 0

18 33 1 0

18 34 1 0

19 35 1 0

19 36 1 0

19 37 1 0

20 38 1 0

20 39 1 0

20 40 1 0

M END

> <Name>

cpd49

> <Absolute Energy>

42.1764

> <Estimate>

170.2

> <FitValue>

2.93939

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

0

4

0

20

Page 142: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

142

> <MappingID>

1

> <Pharmprint>

'00101'

> <Relative Energy>

3.01337

> <s_m_entry_id>

7728

> <s_m_entry_name>

cpd49

$$$$

cpd50

SciTegic09220911323D

41 42 0 0 1 0 999 V2000

7.7419 -0.6283 0.8970 C 0 0

7.0978 0.1823 1.8491 C 0 0

5.9318 -0.2674 2.4947 C 0 0

5.4063 -1.5418 2.1782 C 0 0

6.0531 -2.3446 1.2236 C 0 0

7.2180 -1.8956 0.5797 C 0 0

8.9797 -0.1362 0.2234 C 0 0 2 0 0 0

7.5120 1.1552 2.0797 H 0 0

5.1033 0.8544 3.7695 Br 0 0

4.1736 -2.0628 2.8344 C 0 0

5.6530 -3.3189 0.9798 H 0 0

7.8122 -2.6623 -0.3111 O 0 0

8.9025 1.3474 -0.2674 C 0 0

9.4517 1.3346 -1.7179 C 0 0 1 0 0 0

10.2004 0.0089 -1.8233 C 0 0

9.2777 -0.9288 -1.0566 C 0 0

7.4952 1.9592 -0.2563 C 0 0

9.8190 2.2568 0.5570 C 0 0

10.1715 -0.3986 1.1523 C 0 0

8.3765 1.3427 -2.8105 C 0 0

3.7312 -1.3829 3.5611 H 0 0

4.4029 -2.9967 3.3475 H 0 0

3.4213 -2.2755 2.0751 H 0 0

10.1241 2.1596 -1.9086 H 0 0

11.1674 0.0749 -1.3477 H 0 0

10.3589 -0.3104 -2.8436 H 0 0

8.3802 -1.1163 -1.6330 H 0 0

9.7390 -1.8892 -0.8676 H 0 0

6.7386 1.2447 -0.5817 H 0 0

7.4439 2.8231 -0.9189 H 0 0

7.2283 2.2929 0.7490 H 0 0

10.8695 1.9926 0.4367 H 0 0

9.5771 2.1858 1.6176 H 0 0

9.7012 3.2980 0.2575 H 0 0

10.3010 -1.4608 1.3547 H 0 0

10.0323 0.1096 2.1083 H 0 0

11.0951 -0.0260 0.7090 H 0 0

8.7478 0.8728 -3.7206 H 0 0

Page 143: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

143

7.4837 0.8148 -2.4750 H 0 0

8.0861 2.3644 -3.0573 H 0 0

7.6030 -3.6051 -0.3384 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

12 41 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 24 1 0

15 16 1 0

15 25 1 0

15 26 1 0

16 27 1 0

16 28 1 0

17 29 1 0

17 30 1 0

17 31 1 0

18 32 1 0

18 33 1 0

18 34 1 0

19 35 1 0

19 36 1 0

19 37 1 0

20 38 1 0

20 39 1 0

20 40 1 0

M END

> <Name>

cpd50

> <Absolute Energy>

58.4324

> <Estimate>

160.287

> <FitValue>

3.06693

Page 144: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

144

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

12

0

0

5

0

9

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

1.21312e-11

> <s_m_entry_id>

7702

> <s_m_entry_name>

cpd50

$$$$

cpd51

SciTegic09220911323D

38 39 0 0 1 0 999 V2000

6.6338 -1.6721 2.6350 C 0 0

5.7300 -0.9142 1.8661 C 0 0

5.3507 -1.3565 0.5868 C 0 0

5.8733 -2.5581 0.0727 C 0 0

6.7761 -3.3159 0.8417 C 0 0

7.1554 -2.8735 2.1210 C 0 0

7.0349 -1.2050 3.9864 C 0 0 2 0 0 0

5.3268 0.0080 2.2541 H 0 0

4.6579 -0.7705 0.0011 H 0 0

5.4710 -3.0251 -1.2796 C 0 0

7.1794 -4.2371 0.4535 H 0 0

7.8480 -3.4596 2.7057 H 0 0

5.8544 -0.5924 4.7942 C 0 0

5.8191 0.8332 4.3061 C 0 0

7.0873 1.1949 3.5903 C 0 0

Page 145: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

145

7.9964 -0.0006 3.8772 C 0 0

4.5283 -1.3268 4.5756 C 0 0

6.1835 -0.5726 6.2875 C 0 0

7.7280 -2.3526 4.7169 C 0 0

4.7891 1.6801 4.4825 C 0 0

5.9807 -3.9626 -1.5058 H 0 0

4.3863 -3.1135 -1.3267 H 0 0

5.7783 -2.2909 -2.0244 H 0 0

6.8940 1.2999 2.5324 H 0 0

7.5045 2.1214 3.9620 H 0 0

8.7613 -0.1232 3.1218 H 0 0

8.5094 0.1564 4.8163 H 0 0

4.1016 -1.1119 3.5953 H 0 0

3.7978 -1.0351 5.3301 H 0 0

4.6700 -2.4061 4.6482 H 0 0

7.1779 -0.1732 6.4787 H 0 0

6.1406 -1.5777 6.7036 H 0 0

5.4667 0.0447 6.8306 H 0 0

8.6724 -2.6259 4.2418 H 0 0

7.0947 -3.2400 4.7316 H 0 0

7.9417 -2.0788 5.7514 H 0 0

4.7228 2.7038 4.1436 H 0 0

3.9461 1.2772 5.0249 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 2 0

15 16 1 0

15 24 1 0

15 25 1 0

16 26 1 0

16 27 1 0

17 28 1 0

17 29 1 0

17 30 1 0

18 31 1 0

18 32 1 0

18 33 1 0

19 34 1 0

Page 146: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

146

19 35 1 0

19 36 1 0

20 37 1 0

20 38 1 0

M END

> <Name>

cpd51

> <Absolute Energy>

56.5568

> <Estimate>

130.032

> <FitValue>

2.93998

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

0

4

0

20

> <MappingID>

1

> <Pharmprint>

'00101'

> <Relative Energy>

8.34967

> <s_m_entry_id>

7723

> <s_m_entry_name>

cpd51

$$$$

cpd52

SciTegic09220911323D

Page 147: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

147

37 38 0 0 1 0 999 V2000

6.0365 -1.0207 2.4064 C 0 0

5.5835 -0.7410 1.1036 C 0 0

5.7068 -1.7082 0.0920 C 0 0

6.2842 -2.9588 0.3789 C 0 0

6.7369 -3.2391 1.6799 C 0 0

6.6147 -2.2717 2.6923 C 0 0

5.9069 0.0069 3.4812 C 0 0 2 0 0 0

5.1402 0.2171 0.8761 H 0 0

5.3565 -1.4865 -0.9057 H 0 0

6.4151 -3.9816 -0.6912 C 0 0

7.1823 -4.1972 1.9080 H 0 0

6.9640 -2.4926 3.6889 H 0 0

4.9515 -0.4101 4.6180 C 0 0

4.7121 0.9232 5.3387 C 0 0

4.7730 2.0041 4.2567 C 0 0

5.2326 1.2925 2.9856 C 0 0

3.5967 -0.9107 4.1025 C 0 0

5.5711 -1.4305 5.5712 C 0 0

7.2968 0.3693 4.0112 C 0 0

5.4926 1.1049 6.0640 H 0 0

6.8880 -4.8748 -0.2844 H 0 0

5.4329 -4.1844 -1.1209 H 0 0

7.0539 -3.5967 -1.4858 H 0 0

3.8115 2.4760 4.1088 H 0 0

5.4741 2.7768 4.5393 H 0 0

4.3692 1.0675 2.3721 H 0 0

5.8895 1.9106 2.3875 H 0 0

3.0800 -0.1510 3.5173 H 0 0

2.9494 -1.1920 4.9312 H 0 0

3.7278 -1.7868 3.4666 H 0 0

6.5996 -1.1774 5.8258 H 0 0

5.5719 -2.4240 5.1222 H 0 0

5.0018 -1.4862 6.4994 H 0 0

7.9037 0.8687 3.2565 H 0 0

7.8322 -0.5270 4.3287 H 0 0

7.2189 1.0338 4.8715 H 0 0

3.7771 0.9417 5.8791 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

Page 148: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

148

13 18 1 0

14 15 1 0

14 20 1 0

14 37 1 0

15 16 1 0

15 24 1 0

15 25 1 0

16 26 1 0

16 27 1 0

17 28 1 0

17 29 1 0

17 30 1 0

18 31 1 0

18 32 1 0

18 33 1 0

19 34 1 0

19 35 1 0

19 36 1 0

M END

> <Name>

cpd52

> <Absolute Energy>

34.2627

> <Estimate>

130.067

> <FitValue>

2.87174

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

0

4

0

15

> <MappingID>

1

> <Pharmprint>

'00101'

Page 149: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

149

> <Relative Energy>

0.656783

> <s_m_entry_id>

7753

> <s_m_entry_name>

cpd52

$$$$

cpd53

SciTegic09220911323D

39 40 0 0 1 0 999 V2000

6.7776 -1.3918 0.5264 C 0 0

7.5278 -2.4323 -0.0522 C 0 0

7.0562 -3.7550 0.0190 C 0 0

5.8407 -4.0391 0.6650 C 0 0

5.0935 -2.9989 1.2437 C 0 0

5.5609 -1.6747 1.1733 C 0 0

7.2652 0.0214 0.4580 C 0 0 2 0 0 0

8.6695 -2.1771 -0.6620 O 0 0

7.6334 -4.5524 -0.4251 H 0 0

5.3461 -5.4411 0.7388 C 0 0

4.1583 -3.2094 1.7425 H 0 0

4.9825 -0.8789 1.6201 H 0 0

8.1836 0.3893 1.6618 C 0 0

7.1920 0.6541 2.8083 C 0 0

5.9728 1.1958 2.1118 C 0 0

6.0972 1.0141 0.6252 C 0 0

9.1899 -0.6947 2.0521 C 0 0

8.9175 1.7063 1.3916 C 0 0

7.9565 0.2414 -0.8855 C 0 0

7.5827 1.3499 3.5397 H 0 0

4.3963 -5.4628 1.2735 H 0 0

5.2735 -5.8522 -0.2688 H 0 0

6.0582 -6.0483 1.2952 H 0 0

4.9066 1.7675 2.7078 C 0 0

6.3239 1.9683 0.1746 H 0 0

5.1710 0.6632 0.1922 H 0 0

8.7924 -1.6951 1.8916 H 0 0

9.4604 -0.6063 3.1058 H 0 0

10.1040 -0.6006 1.4661 H 0 0

8.2300 2.5033 1.1010 H 0 0

9.6447 1.5861 0.5863 H 0 0

9.4538 2.0404 2.2785 H 0 0

7.6433 -0.4928 -1.6295 H 0 0

9.0394 0.1669 -0.7786 H 0 0

7.7278 1.2313 -1.2791 H 0 0

6.9288 -0.2580 3.3222 H 0 0

4.7539 1.9860 4.6113 Br 0 0

9.2958 -1.5663 -0.2533 H 0 0

4.1117 2.1053 2.0564 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

Page 150: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

150

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 38 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 36 1 0

15 16 1 0

15 24 2 0

16 25 1 0

16 26 1 0

17 27 1 0

17 28 1 0

17 29 1 0

18 30 1 0

18 31 1 0

18 32 1 0

19 33 1 0

19 34 1 0

19 35 1 0

24 37 1 0

24 39 1 0

M END

> <Name>

cpd53

> <Absolute Energy>

61.3298

> <Estimate>

20.0151

> <FitValue>

3.88683

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

Page 151: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

151

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

8

0

0

6

0

37

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

8.8347

> <s_m_entry_id>

7731

> <s_m_entry_name>

cpd53

$$$$

cpd54

SciTegic09220911323D

41 42 0 0 1 0 999 V2000

0.7342 0.9061 2.2817 C 0 0

1.0847 -0.0491 1.3114 C 0 0

0.1368 -0.4463 0.3424 C 0 0

-1.1623 0.1179 0.3515 C 0 0

-1.5046 1.0773 1.3322 C 0 0

-0.5517 1.4666 2.2903 C 0 0

1.7267 1.3347 3.3104 C 0 0 2 0 0 0

2.3005 -0.5645 1.3217 O 0 0

0.6233 -1.7346 -0.9577 Br 0 0

-2.1721 -0.2963 -0.6696 C 0 0

-3.2207 1.8655 1.3960 Br 0 0

-0.8018 2.2025 3.0447 H 0 0

1.4195 2.7167 3.9224 C 0 0

2.7406 3.0486 4.6225 C 0 0

3.8436 2.4821 3.7183 C 0 0 2 0 0 0

3.1230 1.5731 2.7153 C 0 0

0.2761 2.6780 4.9368 C 0 0

1.1609 3.7939 2.8616 C 0 0

1.8459 0.2480 4.3840 C 0 0

2.8654 4.1098 4.7924 H 0 0

-3.1360 0.1981 -0.5725 H 0 0

-2.3385 -1.3707 -0.5986 H 0 0

-1.7868 -0.0864 -1.6676 H 0 0

3.6588 0.6550 2.5219 H 0 0

Page 152: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

152

3.0538 2.0904 1.7659 H 0 0

-0.4971 3.4095 4.7065 H 0 0

0.6451 2.8863 5.9411 H 0 0

-0.1917 1.6934 4.9528 H 0 0

0.3933 4.4991 3.1800 H 0 0

0.8313 3.3419 1.9272 H 0 0

2.0687 4.3592 2.6580 H 0 0

0.9019 -0.2763 4.5374 H 0 0

2.1424 0.6823 5.3387 H 0 0

2.5954 -0.4905 4.1054 H 0 0

2.7716 2.5797 5.5968 H 0 0

2.6468 -0.9393 2.1414 H 0 0

4.8706 1.7064 4.5422 C 0 0

4.3428 3.2810 3.1864 H 0 0

5.3114 2.3470 5.3069 H 0 0

4.4096 0.8442 5.0207 H 0 0

5.6766 1.3433 3.9062 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 36 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 35 1 0

15 16 1 0

15 37 1 0

15 38 1 0

16 24 1 0

16 25 1 0

17 26 1 0

17 27 1 0

17 28 1 0

18 29 1 0

18 30 1 0

18 31 1 0

19 32 1 0

19 33 1 0

19 34 1 0

37 39 1 0

37 40 1 0

Page 153: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

153

37 41 1 0

M END

> <Name>

cpd54

> <Absolute Energy>

62.136

> <Estimate>

130.525

> <FitValue>

2.92782

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

0

0

10

37

> <MappingID>

1

> <Pharmprint>

'00011'

> <Relative Energy>

2.93921

> <s_m_entry_id>

27

> <s_m_entry_name>

cpd54

$$$$

cpd55

SciTegic09220911323D

39 40 0 0 1 0 999 V2000

6.4788 -1.1356 1.2715 C 0 0

7.1486 -2.0904 0.4850 C 0 0

Page 154: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

154

6.6074 -3.3781 0.3447 C 0 0

5.4002 -3.7217 0.9825 C 0 0

4.7269 -2.7608 1.7707 C 0 0

5.2718 -1.4705 1.9114 C 0 0

7.0437 0.2392 1.4333 C 0 0 2 0 0 0

8.2811 -1.7868 -0.1166 O 0 0

7.1235 -4.1101 -0.2598 H 0 0

4.8660 -5.1000 0.8025 C 0 0

3.1052 -3.1686 2.6482 Br 0 0

4.7672 -0.7251 2.5106 H 0 0

8.0788 0.3225 2.5958 C 0 0

7.2006 0.3939 3.8577 C 0 0

5.9762 1.1239 3.3907 C 0 0

5.9558 1.2305 1.8941 C 0 0

9.0466 -0.8581 2.6770 C 0 0

8.8650 1.6340 2.5184 C 0 0

7.6289 0.6917 0.0975 C 0 0

7.6838 0.9101 4.6763 H 0 0

5.5051 -5.6519 0.1132 H 0 0

4.7792 -5.5860 1.7751 H 0 0

3.8689 -5.0488 0.3663 H 0 0

6.2016 2.2449 1.6123 H 0 0

4.9750 1.0088 1.4918 H 0 0

8.5218 -1.8073 2.7855 H 0 0

9.7195 -0.7472 3.5298 H 0 0

9.6589 -0.9166 1.7765 H 0 0

8.2041 2.4997 2.4582 H 0 0

9.5098 1.6452 1.6403 H 0 0

9.4966 1.7568 3.3958 H 0 0

7.0674 0.2966 -0.7483 H 0 0

8.6630 0.3592 -0.0046 H 0 0

7.6226 1.7791 0.0203 H 0 0

6.9169 -0.5896 4.2026 H 0 0

8.7260 -2.4564 -0.6526 H 0 0

5.0246 1.6166 4.2050 C 0 0

4.1282 2.1434 3.9100 H 0 0

5.1892 1.4552 5.2588 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 36 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

Page 155: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

155

13 18 1 0

14 15 1 0

14 20 1 0

14 35 1 0

15 16 1 0

15 37 2 0

16 24 1 0

16 25 1 0

17 26 1 0

17 27 1 0

17 28 1 0

18 29 1 0

18 30 1 0

18 31 1 0

19 32 1 0

19 33 1 0

19 34 1 0

37 38 1 0

37 39 1 0

M END

> <Name>

cpd55

> <Absolute Energy>

47.8277

> <Estimate>

120.304

> <FitValue>

3.65159

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

8

0

0

2

0

37

> <MappingID>

1

Page 156: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

156

> <Pharmprint>

'10101'

> <Relative Energy>

0.031561

> <s_m_entry_id>

7742

> <s_m_entry_name>

cpd55

$$$$

cpd56

SciTegic09220911323D

39 40 0 0 1 0 999 V2000

-0.1729 0.9948 1.9839 C 0 0

-1.2556 0.8343 1.0987 C 0 0

-1.1865 -0.1353 0.0854 C 0 0

-0.0466 -0.9457 -0.0525 C 0 0

1.0414 -0.7871 0.8358 C 0 0

0.9703 0.1854 1.8519 C 0 0

-0.2292 2.0227 3.0677 C 0 0 2 0 0 0

-2.3299 1.5891 1.2135 O 0 0

-2.0197 -0.2548 -0.5933 H 0 0

-0.0205 -1.9613 -1.1449 C 0 0

2.5960 -1.8507 0.6965 Br 0 0

1.7934 0.3181 2.5414 H 0 0

0.6091 3.2905 2.7276 C 0 0

2.0550 2.8629 3.0334 C 0 0

1.9092 1.8775 4.1606 C 0 0

0.4655 1.5100 4.3445 C 0 0

0.2668 4.4327 3.6885 C 0 0

0.4788 3.7723 1.2813 C 0 0

-1.6910 2.3559 3.3587 C 0 0

2.6839 3.6995 3.3062 H 0 0

-0.9567 -1.9173 -1.7016 H 0 0

0.8539 -1.7945 -1.7741 H 0 0

0.0644 -2.9584 -0.7121 H 0 0

0.0878 2.0098 5.2276 H 0 0

0.3445 0.4454 4.5007 H 0 0

0.3365 4.1216 4.7301 H 0 0

-0.7482 4.7912 3.5146 H 0 0

0.9456 5.2742 3.5461 H 0 0

0.7319 2.9880 0.5684 H 0 0

1.1416 4.6170 1.0964 H 0 0

-0.5415 4.0961 1.0745 H 0 0

-2.3438 1.4978 3.1983 H 0 0

-2.0382 3.1626 2.7119 H 0 0

-1.8147 2.6811 4.3920 H 0 0

2.5097 2.3688 2.1855 H 0 0

-3.0632 1.4641 0.5976 H 0 0

2.9099 1.3778 4.9138 C 0 0

2.6307 0.6775 5.6858 H 0 0

4.7579 1.8498 4.6579 Br 0 0

1 2 2 0

1 6 1 0

Page 157: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

157

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 36 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 35 1 0

15 16 1 0

15 37 2 0

16 24 1 0

16 25 1 0

17 26 1 0

17 27 1 0

17 28 1 0

18 29 1 0

18 30 1 0

18 31 1 0

19 32 1 0

19 33 1 0

19 34 1 0

37 38 1 0

37 39 1 0

M END

> <Name>

cpd56

> <Absolute Energy>

57.3018

> <Estimate>

31.012

> <FitValue>

3.81563

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

Page 158: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

158

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

8

0

0

2

39

> <MappingID>

1

> <Pharmprint>

'01011'

> <Relative Energy>

10.2586

> <s_m_entry_id>

7725

> <s_m_entry_name>

cpd56

$$$$

cpd57

SciTegic09220911323D

41 42 0 0 1 0 999 V2000

6.6250 0.7300 6.4380 C 0 0

7.3380 1.9360 6.3270 C 0 0

7.8120 2.5830 7.4880 C 0 0

7.5660 2.0170 8.7620 C 0 0

6.8470 0.8040 8.8640 C 0 0

6.3820 0.1670 7.7000 C 0 0

6.1210 0.0380 5.2150 C 0 0 2 0 0 0

7.5580 2.4530 5.1320 O 0 0

8.8590 4.3500 7.3050 I 0 0

8.0630 2.6990 9.9930 C 0 0

6.4880 0.0010 10.5370 Br 0 0

5.8320 -0.7620 7.7650 H 0 0

4.9880 0.8030 4.4980 C 0 0

4.4130 -0.2690 3.5630 C 0 0

4.6330 -1.6160 4.2640 C 0 0 1 0 0 0

5.4170 -1.2850 5.5370 C 0 0

3.8690 1.2350 5.4520 C 0 0

5.4960 2.0020 3.6980 C 0 0

7.2940 -0.2490 4.2740 C 0 0

4.9490 -0.2750 2.6240 H 0 0

7.7300 2.2420 10.9250 H 0 0

7.7300 3.7370 9.9930 H 0 0

Page 159: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

159

9.1530 2.6990 9.9930 H 0 0

4.7400 -1.1670 6.3740 H 0 0

6.1080 -2.0740 5.8020 H 0 0

3.0580 1.7380 4.9260 H 0 0

4.2510 1.9220 6.2080 H 0 0

3.4480 0.3730 5.9680 H 0 0

4.8070 2.2790 2.9000 H 0 0

6.4610 1.7800 3.2420 H 0 0

5.6250 2.8700 4.3440 H 0 0

7.9540 -1.0210 4.6700 H 0 0

7.8900 0.6490 4.1150 H 0 0

6.9340 -0.5870 3.3020 H 0 0

3.3760 -0.0870 3.3160 H 0 0

8.0700 3.2690 5.0570 H 0 0

3.3220 -2.3260 4.5920 C 0 0

2.7610 -2.5380 3.6820 H 0 0

5.2310 -2.2530 3.6280 H 0 0

3.5120 -3.2610 5.1190 H 0 0

2.6960 -1.7040 5.2310 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 16 1 0

7 19 1 0

8 36 1 0

10 21 1 0

10 22 1 0

10 23 1 0

13 14 1 0

13 17 1 0

13 18 1 0

14 15 1 0

14 20 1 0

14 35 1 0

15 16 1 0

15 37 1 0

15 39 1 0

16 24 1 0

16 25 1 0

17 26 1 0

17 27 1 0

17 28 1 0

18 29 1 0

18 30 1 0

18 31 1 0

19 32 1 0

19 33 1 0

19 34 1 0

Page 160: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

160

37 38 1 0

37 40 1 0

37 41 1 0

M END

> <Name>

cpd57

> <Absolute Energy>

51.0736

> <Estimate>

120.78

> <FitValue>

2.47

> <HBA_1>

0

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

0

0

0

0

18

> <MappingID>

1

> <Pharmprint>

'00001'

> <Relative Energy>

1.3912e-14

> <s_m_entry_id>

7717

> <s_m_entry_name>

cpd57

$$$$

cpd58

SciTegic09220911323D

40 44 0 0 0 0 999 V2000

Page 161: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

161

9.1671 -3.9701 -2.9538 C 0 0

8.8232 -3.6952 -4.2899 N 0 0

8.2199 -2.4678 -4.5659 C 0 0

7.9416 -1.5006 -3.5626 C 0 0

8.3328 -1.9040 -2.3109 C 0 0

8.9322 -3.0753 -1.9031 N 0 0

7.3886 -0.2773 -3.5383 N 0 0

7.4533 0.0622 -2.1989 C 0 0

8.0351 -0.9308 -1.4258 N 0 0

7.8040 -2.1428 -6.1979 Cl 0 0

9.9068 -5.4701 -2.5965 Cl 0 0

8.2644 -0.9029 0.0294 C 0 0

5.1469 -2.9565 2.1664 C 0 0

4.8236 -2.0963 1.1037 C 0 0

5.8423 -1.4248 0.4047 C 0 0

7.1867 -1.6114 0.7676 C 0 0

7.5109 -2.4725 1.8320 C 0 0

6.4938 -3.1441 2.5307 C 0 0

3.7909 -1.9473 0.8190 H 0 0

5.5852 -0.7648 -0.4122 H 0 0

8.5429 -2.6223 2.1166 H 0 0

6.7486 -3.8034 3.3475 H 0 0

4.0705 -3.6662 2.9055 C 0 0

4.3340 -2.2642 5.0157 C 0 0

4.3636 -2.5178 6.3649 C 0 0

4.5437 -1.3428 7.1416 C 0 0

4.6753 -0.0734 6.5784 N 0 0

4.6241 0.0299 5.1766 C 0 0

4.4506 -1.0730 4.3334 N 0 0

4.2118 -3.8255 6.6253 N 0 0

4.0871 -4.3796 5.3650 C 0 0

4.1636 -3.4308 4.3566 N 0 0

4.6097 -1.4571 8.8512 Cl 0 0

4.7803 1.5788 4.4676 Cl 0 0

7.0887 1.0009 -1.7998 H 0 0

9.2256 -1.3654 0.2543 H 0 0

8.3171 0.1321 0.3699 H 0 0

3.0977 -3.3298 2.5432 H 0 0

4.1382 -4.7352 2.7056 H 0 0

3.9454 -5.4376 5.1858 H 0 0

1 2 2 0

1 6 1 0

1 11 1 0

2 3 1 0

3 4 2 0

3 10 1 0

4 5 1 0

4 7 1 0

5 6 2 0

5 9 1 0

7 8 2 0

8 9 1 0

8 35 1 0

9 12 1 0

12 16 1 0

12 36 1 0

12 37 1 0

13 14 2 0

Page 162: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

162

13 18 1 0

13 23 1 0

14 15 1 0

14 19 1 0

15 16 2 0

15 20 1 0

16 17 1 0

17 18 2 0

17 21 1 0

18 22 1 0

23 32 1 0

23 38 1 0

23 39 1 0

24 25 2 0

24 29 1 0

24 32 1 0

25 26 1 0

25 30 1 0

26 27 2 0

26 33 1 0

27 28 1 0

28 29 2 0

28 34 1 0

30 31 2 0

31 32 1 0

31 40 1 0

M END

> <Name>

cpd58

> <Absolute Energy>

89.7493

> <Estimate>

140.082

> <FitValue>

3.66112

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

6

0

0

Page 163: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

163

15

0

34

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

5.56314

> <s_m_entry_id>

7736

> <s_m_entry_name>

cpd58

$$$$

cpd59

SciTegic09220911323D

40 44 0 0 0 0 999 V2000

3.3109 1.1497 5.1937 C 0 0

2.8901 1.7282 6.4048 N 0 0

1.6917 1.2771 6.9556 C 0 0

0.8922 0.2701 6.3505 C 0 0

1.4256 -0.1997 5.1754 C 0 0

2.5884 0.1530 4.5262 N 0 0

-0.2672 -0.3392 6.6444 N 0 0

-0.4286 -1.2197 5.5896 C 0 0

0.6072 -1.1448 4.6722 N 0 0

1.1859 1.9897 8.4314 Cl 0 0

4.7800 1.6887 4.5034 Cl 0 0

0.7549 -1.9333 3.4360 C 0 0

0.8522 0.5913 -0.0413 C 0 0

2.0164 -0.0808 0.3696 C 0 0

1.9842 -0.9081 1.5068 C 0 0

0.7906 -1.0602 2.2332 C 0 0

-0.3741 -0.3858 1.8208 C 0 0

-0.3411 0.4379 0.6829 C 0 0

2.8789 -1.4245 1.8239 H 0 0

-1.2948 -0.4996 2.3744 H 0 0

-1.2359 0.9573 0.3666 H 0 0

5.1799 -1.6086 -0.5516 C 0 0

5.3061 -2.9099 -0.9692 C 0 0

6.6312 -3.4049 -0.8400 C 0 0

7.6820 -2.6374 -0.3417 N 0 0

7.3996 -1.3136 0.0467 C 0 0

6.1241 -0.7449 -0.0438 N 0 0

4.1357 -3.4044 -1.4022 N 0 0

3.2671 -2.3403 -1.2331 C 0 0

3.8966 -1.2214 -0.7081 N 0 0

6.9837 -5.0159 -1.3081 Cl 0 0

8.6769 -0.3570 0.6608 Cl 0 0

-1.2735 -1.8905 5.4947 H 0 0

-0.0733 -2.6371 3.3505 H 0 0

Page 164: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

164

1.6733 -2.5198 3.4865 H 0 0

2.2168 -2.3773 -1.4864 H 0 0

3.2787 0.0797 -0.3990 C 0 0

0.8698 1.2272 -0.9151 H 0 0

3.9785 0.6861 0.1776 H 0 0

3.0742 0.6143 -1.3266 H 0 0

1 2 2 0

1 6 1 0

1 11 1 0

2 3 1 0

3 4 2 0

3 10 1 0

4 5 1 0

4 7 1 0

5 6 2 0

5 9 1 0

7 8 2 0

8 9 1 0

8 33 1 0

9 12 1 0

12 16 1 0

12 34 1 0

12 35 1 0

13 14 2 0

13 18 1 0

13 38 1 0

14 15 1 0

14 37 1 0

15 16 2 0

15 19 1 0

16 17 1 0

17 18 2 0

17 20 1 0

18 21 1 0

22 23 2 0

22 27 1 0

22 30 1 0

23 24 1 0

23 28 1 0

24 25 2 0

24 31 1 0

25 26 1 0

26 27 2 0

26 32 1 0

28 29 2 0

29 30 1 0

29 36 1 0

30 37 1 0

37 39 1 0

37 40 1 0

M END

> <Name>

cpd59

> <Absolute Energy>

87.117

> <Estimate>

Page 165: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

165

24.0578

> <FitValue>

3.93109

> <HBA_1>

1

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

0

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

25

0

0

0

18

11

> <MappingID>

1

> <Pharmprint>

'10011'

> <Relative Energy>

4.42652

> <s_m_entry_id>

7707

> <s_m_entry_name>

cpd59

$$$$

cpd7

SciTegic09220911323D

82 86 0 0 1 0 999 V2000

6.8641 -3.4610 0.8886 C 0 0

6.9181 -2.0842 0.6045 C 0 0

5.8554 -1.2474 0.9831 C 0 0

4.7333 -1.7842 1.6458 C 0 0

4.6830 -3.1624 1.9287 C 0 0

5.7461 -3.9979 1.5500 C 0 0

7.9892 -4.3471 0.4872 C 0 0

7.7758 -1.6677 0.0966 H 0 0

5.9136 -0.1916 0.7572 H 0 0

3.6986 -0.9678 2.0137 N 0 0

Page 166: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

166

3.8314 -3.5945 2.4356 H 0 0

5.7017 -5.0561 1.7697 H 0 0

8.4434 -4.0830 -0.9229 C 0 0

8.7759 -2.9729 -1.2706 O 0 0

8.4461 -5.1423 -1.7257 O 0 0

8.4780 -4.7816 -3.0987 C 0 0 1 0 0 0

9.9391 -4.6414 -3.5597 C 0 0

9.9903 -4.3969 -5.0774 C 0 0 2 0 0 0

9.3382 -5.5659 -5.8571 C 0 0 1 0 0 0

7.8500 -5.6237 -5.4398 C 0 0

7.6902 -5.8195 -3.9193 C 0 0

11.3709 -3.9592 -5.6273 C 0 0

12.0073 -4.9300 -6.6354 C 0 0

11.0511 -5.4642 -7.7422 C 0 0 1 0 0 0

9.5598 -5.2681 -7.3606 C 0 0 1 0 0 0

8.6450 -6.0282 -8.3328 C 0 0

8.8950 -5.5665 -9.7769 C 0 0

10.3751 -5.7160 -10.1937 C 0 0 2 0 0 0

11.2969 -4.9577 -9.1903 C 0 0 2 0 0 0

12.7544 -5.0729 -9.6796 C 0 0

12.9116 -4.4437 -11.0721 C 0 0

11.7334 -4.6290 -12.0088 C 0 0

10.5588 -5.2022 -11.5791 N 0 0

11.8291 -4.2599 -13.1577 O 0 0

3.6088 -0.4269 3.3772 C 0 0

3.6036 1.1019 3.3615 C 0 0

4.7977 1.7131 4.5350 Cl 0 0

2.6527 -0.6213 1.0396 C 0 0

1.4439 -1.5461 1.1793 C 0 0

1.8818 -3.1832 0.6244 Cl 0 0

9.9810 -6.9194 -5.4970 C 0 0

10.7215 -7.2128 -10.2299 C 0 0

8.8206 -4.2121 1.1786 H 0 0

7.6828 -5.3895 0.5888 H 0 0

7.9841 -3.8129 -3.1911 H 0 0

10.5077 -5.5343 -3.2980 H 0 0

10.4068 -3.8112 -3.0268 H 0 0

9.3551 -3.5247 -5.2387 H 0 0

7.3458 -4.7054 -5.7437 H 0 0

7.3407 -6.4389 -5.9542 H 0 0

6.6347 -5.7784 -3.6528 H 0 0

8.0287 -6.8203 -3.6490 H 0 0

12.0668 -3.7701 -4.8103 H 0 0

11.2518 -2.9969 -6.1309 H 0 0

12.8969 -4.4629 -7.0474 H 0 0

12.3809 -5.7840 -6.0688 H 0 0

11.2388 -6.5377 -7.7732 H 0 0

9.3183 -4.2131 -7.5080 H 0 0

8.8129 -7.1027 -8.2424 H 0 0

7.5962 -5.8552 -8.0907 H 0 0

8.2467 -6.1337 -10.4484 H 0 0

8.5877 -4.5235 -9.8679 H 0 0

11.0325 -3.8979 -9.2023 H 0 0

13.4573 -4.5799 -9.0110 H 0 0

13.0532 -6.1216 -9.7108 H 0 0

13.0683 -3.3697 -10.9523 H 0 0

13.8147 -4.8253 -11.5470 H 0 0

9.8038 -5.2912 -12.2296 H 0 0

Page 167: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

167

4.4448 -0.8015 3.9678 H 0 0

2.7090 -0.8098 3.8571 H 0 0

2.6395 1.5406 3.6158 H 0 0

3.8903 1.4775 2.3774 H 0 0

3.0660 -0.6786 0.0344 H 0 0

2.3598 0.4195 1.1836 H 0 0

0.5784 -1.2265 0.6022 H 0 0

1.1374 -1.6276 2.2242 H 0 0

11.0255 -6.9668 -5.8007 H 0 0

9.4520 -7.7378 -5.9855 H 0 0

9.9390 -7.0909 -4.4212 H 0 0

10.0449 -7.7504 -10.8985 H 0 0

11.7465 -7.3633 -10.5691 H 0 0

10.6307 -7.6549 -9.2392 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 1 0

7 43 1 0

7 44 1 0

10 35 1 0

10 38 1 0

13 14 2 0

13 15 1 0

15 16 1 0

16 17 1 0

16 21 1 0

16 45 1 0

17 18 1 0

17 46 1 0

17 47 1 0

18 19 1 0

18 22 1 0

18 48 1 0

19 20 1 0

19 25 1 0

19 41 1 0

20 21 1 0

20 49 1 0

20 50 1 0

21 51 1 0

21 52 1 0

22 23 1 0

22 53 1 0

22 54 1 0

23 24 1 0

23 55 1 0

23 56 1 0

24 25 1 0

Page 168: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

168

24 29 1 0

24 57 1 0

25 26 1 0

25 58 1 0

26 27 1 0

26 59 1 0

26 60 1 0

27 28 1 0

27 61 1 0

27 62 1 0

28 29 1 0

28 33 1 0

28 42 1 0

29 30 1 0

29 63 1 0

30 31 1 0

30 64 1 0

30 65 1 0

31 32 1 0

31 66 1 0

31 67 1 0

32 33 1 0

32 34 2 0

33 68 1 0

35 36 1 0

35 69 1 0

35 70 1 0

36 37 1 0

36 71 1 0

36 72 1 0

38 39 1 0

38 73 1 0

38 74 1 0

39 40 1 0

39 75 1 0

39 76 1 0

41 77 1 0

41 78 1 0

41 79 1 0

42 80 1 0

42 81 1 0

42 82 1 0

M END

> <Name>

cpd7

> <Absolute Energy>

67.8964

> <Estimate>

10.1204

> <FitValue>

4.30662

> <HBA_1>

1

Page 169: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

169

> <HBD_2>

0

> <HYDROPHOBIC_5>

1

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

0

> <MappedAtoms>

14

0

0

2

0

37

> <MappingID>

1

> <Pharmprint>

'10101'

> <Relative Energy>

29.2295

> <s_m_entry_id>

7740

> <s_m_entry_name>

cpd7

$$$$

cpd8

SciTegic09220911323D

32 34 0 0 0 0 999 V2000

5.4499 -1.6838 0.8031 C 0 0

6.5214 -1.7121 1.7160 C 0 0

7.7528 -2.2724 1.3351 C 0 0

7.9205 -2.8053 0.0460 C 0 0

6.8479 -2.7756 -0.8642 C 0 0

5.6149 -2.2158 -0.4860 C 0 0

6.4011 -1.3048 2.7087 H 0 0

8.5723 -2.2920 2.0391 H 0 0

9.0742 -3.3300 -0.3102 O 0 0

6.9695 -3.1834 -1.8569 H 0 0

4.7965 -2.1971 -1.1913 H 0 0

-1.9174 0.9125 1.0294 C 0 0

-1.0549 1.5673 1.9286 C 0 0

0.2827 1.1554 2.0497 C 0 0

0.7627 0.0875 1.2723 C 0 0

-0.0954 -0.5678 0.3742 C 0 0

-1.4337 -0.1578 0.2511 C 0 0

-3.2208 1.3132 0.9108 N 0 0

Page 170: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

170

-1.4083 2.3925 2.5358 H 0 0

0.9389 1.6639 2.7431 H 0 0

0.2695 -1.3897 -0.2258 H 0 0

-2.0807 -0.6741 -0.4458 H 0 0

4.1515 -1.0937 1.2028 C 0 0

4.0829 -0.5895 2.5076 C 0 0

2.7812 -0.0979 2.6371 C 0 0

2.1735 -0.3463 1.4005 C 0 0

2.9920 -0.9579 0.4984 O 0 0

9.1771 -3.6931 -1.1990 H 0 0

-3.8326 0.8469 0.2713 H 0 0

-3.5635 2.0735 1.4640 H 0 0

4.8569 -0.5745 3.2647 H 0 0

2.3544 0.3712 3.5153 H 0 0

1 2 2 0

1 6 1 0

1 23 1 0

2 3 1 0

2 7 1 0

3 4 2 0

3 8 1 0

4 5 1 0

4 9 1 0

5 6 2 0

5 10 1 0

6 11 1 0

9 28 1 0

12 13 2 0

12 17 1 0

12 18 1 0

13 14 1 0

13 19 1 0

14 15 2 0

14 20 1 0

15 16 1 0

15 26 1 0

16 17 2 0

16 21 1 0

17 22 1 0

18 29 1 0

18 30 1 0

23 24 2 0

23 27 1 0

24 25 1 0

24 31 1 0

25 26 2 0

25 32 1 0

26 27 1 0

M END

> <Name>

cpd8

> <Absolute Energy>

35.8821

> <Estimate>

2.40865

Page 171: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

171

> <FitValue>

4.52368

> <HBA_1>

1

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

9

0

18

0

2

16

0

> <MappingID>

1

> <Pharmprint>

'11110'

> <Relative Energy>

-3.99556

> <s_m_entry_id>

7729

> <s_m_entry_name>

cpd8

$$$$

cpd9

SciTegic09220911323D

27 29 0 0 0 0 999 V2000

0.6739 -0.1237 1.4218 C 0 0

0.3052 0.1528 0.0937 C 0 0

-0.9627 0.6932 -0.1852 C 0 0

-1.8646 0.9589 0.8598 C 0 0

-1.4934 0.6810 2.1875 C 0 0

-0.2267 0.1406 2.4696 C 0 0

2.0085 -0.6937 1.7172 C 0 0

0.9914 -0.0478 -0.7163 H 0 0

-1.2417 0.9042 -1.2071 H 0 0

-3.0524 1.4650 0.5971 O 0 0

-2.1813 0.8834 2.9955 H 0 0

Page 172: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

172

0.0505 -0.0693 3.4923 H 0 0

2.3085 -0.8971 3.0803 C 0 0

3.6013 -1.4420 3.2470 C 0 0

4.2024 -1.6167 1.9950 C 0 0

3.2646 -1.1504 0.6636 S 0 0

5.5772 -2.1774 1.8601 C 0 0

6.3071 -2.5242 2.9254 N 0 0

7.4772 -2.9867 2.4665 N 0 0

7.5269 -2.9482 1.1080 C 0 0

6.2883 -2.4182 0.6749 C 0 0

-3.6623 1.6434 1.3250 H 0 0

1.6491 -0.6729 3.9097 H 0 0

4.0560 -1.6855 4.1991 H 0 0

8.2177 -3.3173 3.0394 H 0 0

8.3717 -3.2696 0.5113 H 0 0

5.9633 -2.2404 -0.3414 H 0 0

1 2 2 0

1 6 1 0

1 7 1 0

2 3 1 0

2 8 1 0

3 4 2 0

3 9 1 0

4 5 1 0

4 10 1 0

5 6 2 0

5 11 1 0

6 12 1 0

7 13 2 0

7 16 1 0

10 22 1 0

13 14 1 0

13 23 1 0

14 15 2 0

14 24 1 0

15 16 1 0

15 17 1 0

17 18 2 0

17 21 1 0

18 19 1 0

19 20 1 0

19 25 1 0

20 21 2 0

20 26 1 0

21 27 1 0

M END

> <Name>

cpd9

> <Absolute Energy>

50.0162

> <Estimate>

20.1366

> <FitValue>

3.86754

Page 173: Pharmacophore Modeling for Qualitative Prediction of Antiestrogenic Activity

173

> <HBA_1>

0

> <HBD_2>

1

> <HYDROPHOBIC_5>

0

> <HYDROPHOB_aromatic_3>

1

> <HYDROPHOB_aromatic_4>

1

> <MappedAtoms>

0

10

0

21

1

0

> <MappingID>

1

> <Pharmprint>

'01110'

> <Relative Energy>

6.47995

> <s_m_entry_id>

10

> <s_m_entry_name>

cpd9

$$$$