Overcoming barriers for genomic data sharing yaac presentation may 23 2015
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Fiona Nielsen May 23 - 2015 Young Alliance Against Cancer Tweet us @repositiveio
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Transcript of Overcoming barriers for genomic data sharing yaac presentation may 23 2015
Fiona NielsenMay 23 - 2015Young Alliance Against
Cancer
Tweet us @repositiveio
The frustrated researcher!
How did this happen?
The long road to resultsRaw reads
Read QC
Variant calling
Analysis-readyreads
Analysis-readyvariants
Variant Annotation Genotype
Refinement Raw Indels
Raw SVs
Raw SNPs
Mapping
External Data
What do you do?
Sequence Read Archive
What do you do?
What do you do?
Yikes
What do you do?
PubMed?
What do you do?
What do you do?
Ask your PI
Write application
Apply for access
Wait…Wait…Wait…Wait…
Access requests can take months
You are not the only one
T. A. van Schaik et alThe need to redefine genomic data sharing: a focus on data
accessibility, Applied & Translational Genomics, 2014
10.1016/j.atg.2014.09.013
Researchers spend months to find and access genomic data, and often choose to not access
data at all
2006 2007 2008 2009 2010 2011 2012 2013 2014 2015
Genomes Sequenced
~400k genomes produced
And how do you keep up?
And how do you keep up?
Data is uploaded to repository
Data is discovered by potential user
Data is accessed by potential user
What IF?You could easily search and
discover data?
You could rank data by relevance?
Registering data was simple to do?
Search would be easy
figshare.com
Overview would be simple
Collaboration would be easy
My research
Through your daily work routine you gain visibility
for potential collaborators
You would discover new resources you did not
know existed
Making your contribution would be easy
https://www.flickr.com/photos/blackzack00/10205948476/
It has taken a while…
DNAdigest was founded in March 2013
Working out what to do
Making data discoverable and shareable
Building through collaboration
DNAdigest organises hackathons/workshops 4 times a year
We founded Repositive
To make genomic data accessible for research
Adrian Alexa CTO & Data Scientist
Fiona NielsenFounder & CEO
A portal to search for data
Interested? Sign up for our beta at repositive.io
To make your data visible
Interested? Sign up for our beta at repositive.io
To collaborate
Interested? Sign up for our beta at repositive.io
Read more at http://repositive.io and tweet us @repositiveio
Thanks for listening!
We are hiring!Data Scientist in Genomics
Software DeveloperFront End Web Developer
Communications/marketing assistant
repositive [ re-poz-i-tiv ], noun; 1. a positive experience of accessing
genomic data repositories
Read more at http://repositive.io and tweet us @repositiveio
