Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a...
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![Page 1: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/1.jpg)
Ontologizing morphological terms for Hymenoptera
(Insecta) - implementing and benefiting from a
controlled vocabulary
Andrew R. Deans
Gregory A. Riccardi
Fredrik RonquistSchool of Computational Science, Florida State University
![Page 2: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/2.jpg)
Hymenoptera
• one of 4 megadiverse insect orders (>115,000 described spp.)
• includes sawflies, ants, bees, social wasps, parasitic wasps
![Page 3: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/3.jpg)
Hymenoptera Relationships
![Page 4: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/4.jpg)
HymAToL - Assembling the Tree of Life for Hymenoptera
>30 people collaborating to resolve relationships between the major lineages of Hymenoptera
molecules
morphology
![Page 5: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/5.jpg)
Terminological Issues
same spelling but different structure (e.g., “face”)
![Page 6: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/6.jpg)
same structure but different spelling
Terminological Issues
“unguis” or “(pre)tarsal claw”
![Page 7: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/7.jpg)
Terminological Issues
obscure terms
outdated terms (=to be discouraged)
ortaxon-specific terms
alitrunk
gaster
![Page 8: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/8.jpg)
Ontology - controlled, explicit vocabulary
• includes relationships (“part of”, “synonym of”, etc.)
• hierarchical
• treats outdated terminology
• terms are verbally defined and illustrated
• incorporates taxon-specificity
Several ways to implement and benefit...
![Page 9: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/9.jpg)
Search for -
“claw”
“pretarsus”
“orbicula”
“ungues”
“unguis”
![Page 10: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/10.jpg)
OR
Search for -
“pretarsus”
+
related terms
![Page 11: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/11.jpg)
Annotations
• high-lighting
• feedback
![Page 12: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/12.jpg)
Phylogenetic tools
• high-lighting
• feedback
![Page 13: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/13.jpg)
Terminological Issues
same spelling but different structure (e.g., “face”)
![Page 14: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/14.jpg)
• online atlas of hymenopteran morphology
Other implementations/benefits
• “approved” terminology (ISH)
![Page 15: Ontologizing morphological terms for Hymenoptera (Insecta) - implementing and benefiting from a controlled vocabulary Andrew R. Deans Gregory A. Riccardi.](https://reader035.fdocuments.net/reader035/viewer/2022062222/56649ea25503460f94ba6684/html5/thumbnails/15.jpg)
bioinformatics
colleagues
[Term]
id: 587
name: scrobal groove
def: "A horizontal groove on the mesopleuron that may be continuous with the episternal groove anteriorly and ends at the pleural grove posteriorly”
ref: "Goulet H, Huber JT, 1993. Hymenoptera of the World: An Identification Guide to Families. Research Branch, Agriculture Canada Publication 1894/E., Ottawa, ON. 668 pp.”
link: "<link to images, etc. could go here>”
relationship: part_of 157 ! mesopleuron
relationship: is_a 138 ! groove
data dump
REAL ONTOLOGY
mx
backend
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NSF-funded MorphBank project (http://morphbank.net/)
Neil Sarkar (AMNH), Donat Agosti (AMNH), Norm Johnson (OSU), Matt Yoder (TAMU), et alia plurima
Acknowledgments