NONPARAMETRIC ESTIMATION AND INFERENCE …ims.nus.edu.sg/events/2017/quan/files/jialiang.pdf ·...
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NONPARAMETRIC ESTIMATION AND INFERENCE
FOR POLYTOMOUSDISCRIMINATION INDEXJIALIANG LI, QUNQIANG FENG, JASON P. FINE
MICHAEL J. PENCINA, BEN VAN CALSTER
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MULTI-CATEGORY CLASSIFICATION ACCURACY
• THE OUTCOMES OF DIAGNOSTIC PROBLEMS IN MEDICINE SOMETIMES INVOLVE MORE THAN TWO DISTINCT CATEGORIES.
• TO EXAMINE THE CLASSIFICATION ACCURACY WE MUST EMPLOY NON-STANDARD ACCURACY MEASURES.
• TWO GENERAL APPROACHES TO EXTEND THE DIAGNOSTIC MEASURE OF DICHOTOMOUS DISCRIMINATION (SO-CALLED C-STATISTIC OR AREA UNDER THE RECEIVER OPERATING CHARACTERISTIC CURVE (AUC)) TO POLYTOMOUS PROBLEMS.
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CONSIDER A PAIR
• THE FIRST APPROACH EVALUATES PAIRS OF SUBJECTS FROM A DIFFERENT CATEGORY, SUCH AS THE M-INDEX (HAND AND TILL (2001), MACHINE LEARNING), AND OBUCHOWSKI’S PAIRWISE C-STATISTIC.
• IN GENERAL THERE ARE M CHOOSE 2 PAIRS. COULD BE TOO MANY WHEN M IS LARGE.
• THE M-INDEX DOES NOT CORRESPOND TO ANY RANDOM EVENT.
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CONSIDER A SET OF SUBJECTS SELECTED FROM ALL CATEGORIES
• THE SECOND APPROACH EVALUATES SETS OF M SUBJECTS, WHERE EACH IS FROM A DIFFERENT CATEGORY.
• VOLUME UNDER THE ROC SURFACE (VUS): M=3.
• HYPERVOLUME UNDER THE ROC MANIFOLD (HUM): M>=3.
• R PACKAGE HUM IS AVAILABLE.
• HUM EXTENDS AUC WITH SIMILAR PROBABILISTIC INTERPRETATION.
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POLYTOMOUSDISCRIMINATION INDEX (PDI)
• SIMILAR TO HUM, PDI IS ALSO EVALUATING THE PROBABILITY OF AN EVENT RELATED TO SIMULTANEOUSLY CLASSIFYING M SUBJECTS FROM M CATEGORIES.
• VAN CALSTER ET AL. (2012) INTRODUCED THE SAMPLE DEFINTION OF PDI BUT DIDN’T DISCUSS POPULATION DEFINITION AND ALSO DIDN’T PROVIDE INFERENCE METHODS.
• HIGHER PDI VALUES SUGGEST BETTER MULTI-CLASS DISCRIMINATION. IF SOME BIOMARKERS HAVE TOO LOW A PDI VALUE, THEY SHOULD BE REMOVED FROM CONSIDERATION AND WE MAY RESERVE MORE ATTENTION ON OTHER QUALIFIED BIOMARKERS.
• USEFUL FOR A SCREENING STUDY WITH THOUSANDS OF CANDIDATE BIOMARKERS AND ONLY A FEW OF THEM ARE TRULY USEFUL FOR DIFFERENTIATING THE DISEASE STATUS.
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CONCEPTUAL DEFINITION
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CONCEPTUAL DEFINITION
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REMARKS
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EQUALLY LIKELY CATEGORIES
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ACTIONABLE DEFINITION
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ACTIONABLE DEFINITION
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COMPARISON WITH SENSITIVITY
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COMPARING IN TWO DIRECTION
)...,( :MSubject ......
)...,( :2Subject )...,(:1Subject
,2,1
2,22,12
1,21,11
MMMM
M
M
ppp
pppppp
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ACTIONABLE DEFINITION
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NULL VALUE OF PDI
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SAMPLE ESTIMATION
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U-STATISTIC FORM
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UNBIASEDNESS
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EXACT VARIANCE
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SAMPLE ESTIMATES
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ASYMPTOTIC VARIANCE
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CENTRAL LIMIT THEOREM
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COVARIATE ADJUSTMENT
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SIMULATION STUDY
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SIMULATION STUDY: UNEQUAL GROUP SIZE
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LIVER CANCER EXAMPLE
• 202 PARTICIPANTS FROM CAIRO, EGYPT: 73 HEPATOCELLULAR CARCINOMA (HC) CASES, 77 HEALTHY INDIVIDUALS (NC) AND 52 WITH CHRONIC LIVER DISEASE (QC).
• FOCUS ON A TOTAL OF 484 PEAKS RESULTED FROM PREPROCESSING OF THE RAW MASS SPECTROMETRY DATA.
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SYNOVIAL BIOMARKERS: 6 CATEGORIES
• THE FOLLOWING SPECIMEN SAMPLES WERE INCLUDED: (1) NON-INFLAMED CONTROL SPECIMENS (N=22) (2) RHEUMATOID ARTHRITIS (RA) WITH ACTIVE DISEASE DESPITE DMARD TREATMENT (N=28); (3) EARLY UNDIFFERENTIATED ARTHRITIS (DURATION < 12 MONTHS, N=10); (4) CHRONIC (DISEASE DURATION > 4 WEEKS) SEPTIC ARTHRITIS (SEA) PROVEN BY POSITIVE BACTERIAL CULTURE (N= 11); (5) NON-INFLAMMATORY ORTHOPEDIC ARTHROPATHIES(ORTH.A, N=23, CONSISTING OF FEMUR FRACTURE, N=3; AVASCULAR NECROSIS OF THE FEMUR, N=3; MENISCUS AND/OR LIGAMENT INJURY, N=13, AND PLICA SYNDROME, N=4); (6) OSTEOARTHRITIS (OA, N=31).
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PDI FOR MARKERS
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SOFTWARE
• DOWNLOADABLE FROM MY WEBSITE:
• HTTP://WWW.STAT.NUS.EDU.SG/~STALJ/