Next-generation sequencing request management system in Galaxy
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Transcript of Next-generation sequencing request management system in Galaxy
![Page 1: Next-generation sequencing request management system in Galaxy](https://reader034.fdocuments.net/reader034/viewer/2022052522/555012bfb4c90555618b4b10/html5/thumbnails/1.jpg)
Goal Usage Implementation Availability
Next-generation sequencingrequest management system
in Galaxy
Brad Chapman
16 May 2010
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Goal Usage Implementation Availability
Sequencing CoreResearchers
Samples
Analysis
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Goal Usage Implementation Availability
Sample and request infrastructure
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Goal Usage Implementation Availability
Functionality
Researcher sample entry
Sequencing tracking and management
Layout of flow cells
Full integration with Galaxy
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Goal Usage Implementation Availability
Multiple services
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Goal Usage Implementation Availability
Sample entry
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Goal Usage Implementation Availability
Organize as projects
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Goal Usage Implementation Availability
Project based view
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Goal Usage Implementation Availability
Tracking and management
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Goal Usage Implementation Availability
Flow cell layout
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Goal Usage Implementation Availability
Leverages Galaxy infrastructure
Display
grids
form builder
Databasesamples
requests
events
form values
Added to databaseOne relationship table
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Goal Usage Implementation Availability
Sample request relationships
Sample
LibraryConstruction Validation
Pre-sequencingquantitation
SequencingDetails
Sequencingresults 1Requests:
Next-genSequencingRun 1
Next-genSequencingRun 2
Sequencingresults 2
Requests:
Sample 2 Sample 3
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Goal Usage Implementation Availability
Community
PositivesConsistent
interface
Excellent backend
Maintainability
Suggestions
High level update
summaries
Internals
documentation
Roadmap
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Goal Usage Implementation Availability
Availability
Repository tracking Galaxy development
http://bitbucket.org/chapmanb/
galaxy-central
Hope to integrate with the main code base