Network Visualization: Nifty New Tools
Transcript of Network Visualization: Nifty New Tools
Network Visualization: Nifty New Tools
Doug Luke
Bobbi Carothers
3/10/2016
Gephi
• https://gephi.org/
• Gephi has updated to v 9.1!
• Works on Windows 8
• Can open files from v 8.2, doesn’t quite bring
everything over
Katya Ognyanova Blog
• General tutorial for network vizualization in R
• http://kateto.net/network-visualization
ggnetwork
• R package that works
with ggplot for
network visualization
• https://briatte.githu
b.io/ggnetwork/
• Backbone example
degree
20
40
60
Hospital Network Backbone
Plotly
• Network graphics in R
• https://plot.ly/r/network-graphs/
Plotly and Shiny
• Interactive networks
• http://www.r-bloggers.com/network-
visualization-with-plotly-and-shiny/
networkD3
• JavaScript networks in R
• https://christophergandrud.github.io/networkD3/
JSNetworkX
• Python language software (early development)
• http://felix-kling.de/JSNetworkX/index.html
Protein Interaction Network Visualizer
• Filter & manipulate protein networks
• http://bmcbioinformatics.biomedcentral.com/art
icles/10.1186/1471-2105-15-129