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My New Year’s Resolution is 3840 x 21601. The x86 Architecture –… since divested MIPS in 1998...
Transcript of My New Year’s Resolution is 3840 x 21601. The x86 Architecture –… since divested MIPS in 1998...
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
New Year’s Resolution
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SGI Confidential
INTERNAL USE ONLY - Do Not Distribute
My New Year’s Resolution is
3840 x 2160
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2 ©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI Update:
Zero Copy Architecture (ZCA)
Mark R. Fernandez, Ph.D. Americas Technology Officer, SGI
+1 864.416.1418
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
Agenda:
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– SGI’s Business Overview & Presence
– SGI’s Commitments
– Overview of the SGI Family of HPC Solutions • SGI Rackable
• ICE
• UV
• IDC
– UV300 (UV Building Block)
– UV300 and Zero Copy Architecture (ZCA)
– Summary
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI Business Overview
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI SGI Finding answers to the world’s
biggest challenges 30+ years of innovation
600+ patents
6,500+ customers
50+ countries
1100+ employees
Leader in High Performance Computing (HPC)
Pioneer in High Performance Data Analytics (HPDA)
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI Current Business Presence
• Clusters: 4 SGI Petascale Systems
• Shared Memory: UV & 1st to ship Phi
• Storage: 600 PB:
• Hadoop: ~10,000 Nodes across 5 solutions
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI’s Commitments 1. The x86 Architecture
– … since divested MIPS in 1998
– Our x86 roadmaps extend into 2020+
2. Open Source Software
– We support RHEL, SLES and other Linux O/S’s
– We contribute: e.g., the XFS file system • XFS was created by SGI in 1993
• Open-sourced XFS in 2000
• XFS is now the default file system for RHEL 7 (2014)
3. US-based Corporation
– SGI Federal, a wholly owned SGI subsidiary
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI HPC Solutions
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI HPC & HPDA Platforms: Covering the Extremes and the Middle Ground
SGI Rackable Commodity: • Processors
• Memory
• Interconnect
SGI ICE • Integrated Cluster
Environment:
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
SGI IDC Hadoop Optimized:
• 480 HDD + compute
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
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SGI UV • One Node
• Single System Image
Commodity Processors, & Memory
• SGI Interconnect: Cache Coherent, Globally Shared Memory
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI HPC & HPDA Platforms: Covering the Extremes and the Middle Ground
SGI Rackable Commodity: • Processors
• Memory
• Interconnect
SGI ICE • Integrated Cluster
Environment:
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
SGI IDC Hadoop Optimized:
• 480 HDD + compute
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
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SGI UV • One Node
• Single System Image
Commodity Processors, & Memory
• SGI Interconnect: Cache Coherent, Globally Shared Memory
Operating Systems:
SGI Management Suite (SMS) SGI Foundation Software SGI Management Center Open Source integration
System Management
(w/KVM)
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
SGI HPC & HPDA Platforms: Covering the Extremes and the Middle Ground
SGI Rackable Commodity: • Processors
• Memory
• Interconnect
SGI ICE • Integrated Cluster
Environment:
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
SGI IDC Hadoop Optimized:
• 480 HDD + compute
Commodity Processors, Memory & Interconnect
• Optimized Density, Power, Cooling and Performance
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SGI UV • One Node
• Single System Image
Commodity Processors, & Memory
• SGI Interconnect: Cache Coherent, Globally Shared Memory
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV3000 and UV30 (baby brother) • CPU: Intel E5-4600v3
– Haswell-EP4S (HSW-EP4S)
Up to 256 sockets 4,096 cores (using 16-core processors)
8,192 threads
Up to 64TB of memory
Cache coherent
Globally shared & addressable
• NUMAlink-6 (NL6) (12.5 GT/s)
• HyperCube Topology
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300 Chassis • 5U: 4 sockets per chassis
• E7 IvyBridge-EX -> Haswell-EX
• Up to 3 TB (32GB DIMMs) – 96 DIMM slots ; 24 per socket
– ½ TB = 16 * 32GB
– 1 TB = 32 * 32GB
– 2 TB = 64 * 32GB
– 3 TB = 96 * 32GB
• 3 bulkhead options: 1. 8 PCIe with 4 x 2.5” disks
2. 12 PCIe
3. Compute Only – no PCIe
• NUMAlink-7 (NL-7)
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300 Chassis Architecture
Scale up in 5U chassis increments (4-sockets and up to 3TBs) Maximum per rack: 8 chassis, 32 sockets, 24TB w/32GB DIMMs)
4 Socket (1-3TB) 8 Socket (6TB) 16 Socket (12TB) 32 Socket (24TB)
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300 & UV300H – Topology & Latency • NL7 – up to 32 sockets:
– “non-blocking” interconnect
– 1:1 blocking
– Full B/W Fat-Tree
– Max Hop Count = 1
– Up To 24TB (8*3)
– 1 Rack
• Enterprise says:
“All-To-All” • All-to-All up to 32 sockets
• Max hop count = 1
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
• Nvidia Quadro K5200, K6000, K620
• Nvidia Tesla K20X, K40 and K80
• Intel Phi 5110P and 7120P
– 4 double wide GPUs per chassis
– Max 8 Quadro per SSI
– Max 16 Tesla per SSI
– Max 32 Phi per SSI
UV300 and Co-Processors
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
Intel P3700 NVMe Card
• Breakthrough Performance – 400K random IOPS (Intel numbers)
– 2.4GB/s bandwidth (Intel numbers)
• High Capacity – 800GB … 2TB
• Low Power Consumption – 4, 16, 25 watts
• Low Cost
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
8 x Intel P3700 NVMe Card in a UV300
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV + VME Performance Data
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64
0
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40
60
80
100
120
140
160
180
200
0
5,000,000
10,000,000
15,000,000
20,000,000
25,000,000
30,000,000
35,000,000
0 10 20 30 40 50 60 70 80
P3700 Cards
IOPS
Expected IOPS
GB/s
Linear (IOPS)
Linear (GB/s)
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
30 Million IOPS = 30+ Arrays …
400% more expensive. Also need HBAs, switches, cables, software…
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
Conceptual HPC Workflow
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• Traditional Today ∶
𝐶𝑜𝑚𝑝𝑢𝑡𝑒 > 𝑆𝑡𝑜𝑟𝑒 > 𝑪𝒐𝒑𝒚 > 𝐴𝑛𝑎𝑙𝑦𝑧𝑒 • UV + SGI’s Zero Copy Architecture (ZCA):
𝐶𝑜𝑚𝑝𝑢𝑡𝑒 > 𝑆𝑡𝑜𝑟𝑒 (𝐿𝑜𝑐𝑎𝑙𝑙𝑦) > 𝐴𝑛𝑎𝑙𝑦𝑧𝑒
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300 : Workflow Concept
1. Data Acquisition / Ingest (Stock or custom PCI)
2. QA/QC
3. Pre-Processing
4. Processing…
5. DB Searching w/SSDs
6. Post-Processing
7. “Save Your Science”
8. “Show Your Science”: VizServer
• ZCA: Zero Copy Architecture
• All-to-All
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300 : Sequencing Workflow Concept 1. Data Acquisition: e.g., Illumina Sequencer
2. “QC”, e.g., q-score
3. “QA/Trim”
4. Sequence Aligner • Mapping/Indexing fragments
• e.g., bowtie, tophat
5. Sequence Assembler • Aligning/Merging sequences
• e.g., velvet, pipeline by Illumina
6. Sequence Analysis • DB Searching w/SSDs
7. “Save Your Science”
8. VizServer
• All-to-All
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ZCA: Zero Copy Architecture
©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
UV300: Integrated Compute & Storage • Single Rack UV300 system delivers:
– Compute: • Up to 480 Intel Xeon cores
– Memory: • Up to 24TB DRAM (32GB DIMMs)
– Non-volatile Memory: • Up to 128TB FLASH (8x8x2TB)
• 30 Million IOPs
• 200 GB/s
• All in one rack, air-cooled
• Zero Copy Architecture (ZCA) Phase I
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
Thanks!
Mark R. Fernandez, Ph.D. Americas Technology Officer, SGI
+1 864.416.1418
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
Q&A:
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©2016 SGI. All rights reserved. Mark R. Fernandez, Ph.D. v5.2
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