Frequency-domain interferometry diagnostic system for the detection of relativistic plasma waves
My Co Plasma Detection
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Transcript of My Co Plasma Detection
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Detection of Mycoplasma contamination in
mammalian cell culture
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commonly called mycoplasma or PPLO
(pleuropneumonia like organisms), class of Moll icutes(soft skin)
with the families:
Mycoplasmataceae: Mycoplasma(animal), Ureaplasma(animal)
Acholeplasmataceae: Acholeplasma(animal, plant)
Spiroplasmataceae: Spiroplasma(plant, rodent)
Anaeroplasma(stomachs of ruminants)
Discovered in 1898 and classified as virus
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The majority of mycoplasma species contaminate
human cell lines
M. arginin i( bovine )
M. fermentans ( human )
M. hyo rhinis ( porcine )
M. orale ( human )
A. laidlawaii ( bovine)
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Differences from other prokaryotes
Lack of cell wall: unable to produce cell wall polymers
Smallest self replicating prokaryotes with coccid
form , 0.3 um
Passfreely through cellulose- and polyvinyl filters with a 0.45 m
pore sizeGenome size is 600 kb to 1700 kb (1/5 of the E. co li genome) with
approximately 500 genes
Does not cause culture turbidity or pH change
Most use alternative UGA=trp code
No TCA cycle and use cholesterol for growth
Parasites for humans, animals, plants, insects
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The Effect of Mycoplasma
Interference of cell growth rate
Induction of morphological alteration ( cyto pathology)
Induction of chromosomal aberration chromosomal aberration
chromosomal aberration
Influencing amino acid and nucleic acid metabolism
Membrane alteration
Transformation
Associate to mammalian cell membranes
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The Effect of Mycoplasma
Fast glucose reduction and formation of acids -> pH waste
Arginine depletion -> inhibition of protein biosynthesis,
cell division and growth
Influence of immunological reactions (macrophage activation,
inhibition of antigen presentation, induction of
signal transduction)
Influence of virus proliferation and the infection rate
Decrease of the transfection rates by 5 % through
electroporation
Induction of leopard cells (condensation of the
chromatins
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Mycoplasma contamination through:
Cross-contamination from untested infected cells toother cell lines
Primary cultures from the original tissue(incidence approximately 4 %) !! tissue graph
Air borne microscopic aerosolization during pipettingTransfer of medium and/or cells during routine
handling when more than one cell line is under the
hood at a time
The same bottle of medium is used for more than onecell line.
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New cultures from unknown sources, also partlyfrom cell banks
Virus suspensions, antibody solutions or otheradditions of contaminated cell cultures
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Prevention:
Good aseptic technique in conjunction with routine
testing.
Always try to work "clean-to-dirty" in order of handling
cultures during a work day or week.
Handle confirmed uncontaminated cells first,
unknown or untested cells next
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Mycoplasma Diagnostic MethodsDNA-binding Fluorescence Coloring Materials
Bisbenzimide, DAPI
Biochemical Verification Methods
Adenosinphosphorylase test (6-MPDR-Test)
Enzyme-Immuno Verification
Cultivation Methods
PCR-Technique
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Mycoplasma Detection
5- primers( Myco-5)
cgc ctg agt agt acg twc gc cgc ctg agt agt acg tac gc
cgc ctg agt agt acg aac gc
tgc ctg rtg agt aca ttc gc tgc ctg atg agt aca ttc gc
tgc ctg gtg agt aca ttc gc
cgc ctg agt agt atg ctc gc cgc ctg agt agt atg ctc gccgc ctg ggt agt aca ttc gc cgc ctg ggt agt aca ttc gc
3-primers( Myco-3)
gcg gtg tgt aca ara ccc ga gcg gtg tgt aca aga ccc ga
Gcg gtg tgt aca aac ccc ga gcg gtg tgt aca aaa ccc ga
r =mixture of a and g gcg gtg tgt aca aac ccc gaW= mixture of t and a
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Extration of genomic DNA
1. Cells harvest from 6 mm dishor 25T flask Wash
with PBS once2. Transfer cells into a clean eppendorf
3. Centrifuge, 2000 rpm, 10 min
4. Discard PBS5. Cell lyse with 300ul cell lysis buffer
6. Add 1.5ul RNAaseA sol , mix by invert 25x
7. Incubate 37o
C, cool to room temperature
8. Add 100 ul protein pricipitation sol
9. Vortex, vigorously, 20sec
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11. Take supernatant to a fresh tube
12. Add 300 ul of Isopropanol, mix by invert 50x till thewhite thread appear
13. Centrifuge, 1 min
14. Wash with 1 ml 75% Ethanol15. Centrifuge, 1 min, and air dry
16. DNA dissolve in 50 ul of 1X T.E buffer
17. Take 1 ugfor PCR detection
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Mycoplasma PCR test
primers Myco-R1 6 ul
Myco-L1 3 ul
dNTP ( 5mM) 2.5 ul
10x Tag buffer 1.5 ul
DNA 2 ul
DDW 0 ul
15 ul
950C 7 min
Tag DNA polymerase 0.5 ul + 1 ul 10x buffer + 8.5ul DDW
65oC 2 min
72oC 5 min
mixture1
mixture2
Pause
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95OC 5 sec
650C 8 sec
720C 16 sec+1(each cycle)
32 cycles
3ul PCR product + 1ul 6X loading dye + 2ul TE
0.7% agarose gel electrophoresis
720C 10min
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Mycoplasma DNA preparation
Cells culture in antibiotic free medium for 2 weeks
Collect 1 ml of supernatant
Centrifuge 13000rpm, 5 min
Resuspend pellet in 1 ml PBS
Centrifuge again 13000rpm, 5 min
Resuspend pellet in 100 ul PBS, heat 95oC, 15 min
Add equal volume of phenol/chloroform, vortex
Take upper layer
Add 2.5 vol of 95% Ethanol, 1/10 vol 3M sodium acetate
-200C , over night
Centrifuge 13000rpm, 10 min
Wash pellet with 1 ml 75% ETOH
Vacuum dry DNA and resuspend DNA in 50ul 1x TE
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Mycoplasma PCR test
primers Myco-R1 6 ul
Myco-L1 3 ul
dNTP ( 5mM) 2.5 ul
10x Tag buffer 1.5 ul
DNA 2 ul
DDW 0 ul
15 ul
950C 7 min
Tag DNA polymerase 0.5 ul + 1 ul 10x buffer + 8.5ul DDW
65oC 2 min
72oC 5 min
mixture1
mixture2
Pause
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95OC 5 sec
650C 8 sec
720C 17 sec
32 cycles
5ul PCR product + 1ul 6X loading dye
1% agarose gel electrophoresis
720C 10min