MS Castep 计算化学高级教程

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 NCHC CASTEP 教材 CASTEP / Materials Studio 计算化学高级训练课程 (原授课于国家高速网络与计算中心:20048月) 李明宪 淡江大学物理系 第一天 上午 Materials Studio  CASTEP 快速入门 认识晶体结构与 ICSD 数据库 模型建构技巧  接口之标准 3D 功能 下午 密度泛函理论与 CASTEP 平面波赝势方法 预测基本物性(I): 原子轨域分子结构化学键键级、键能、晶胞参数、弹性系数张 表面重构、功函数 实习 预测基本物性(I 第二天 上午 能带结构理论简介 (group 能带结构简介 ) 超晶胞、倒空间、布里渊区、 k -取样、费米面、分数占据态、投影态密度 预测基本物性(II 能带结构、态密度、投影态密度导体、半导体、绝缘体磁性光谱声子谱 实习 预测基本物性(II 下午 CASTEP 实战守则 模型选定、赝势选择、精确性测试、收敛性测试、重要参数调控、 CASTEP 文献数 据库 高级功能 分子动力学过渡态搜寻能阶修正、其它发展中之研究工具介绍 EELS NLO NMR/EPR  自由实习与个案讨论 待做事项 1 / 111

description

MS casteb materials

Transcript of MS Castep 计算化学高级教程

  • NCHC CASTEP

    CASTEP / Materials Studio

    20048

    Materials Studio CASTEP ICSD 3D CASTEP I I (group ) k - II II CASTEP CASTEP EELSNLONMR/EPR

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  • NCHC CASTEP

    Materials Studio CASTEP Materials Sautioproject

    projectNaCl

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  • NCHC CASTEP

    Explorer jobproject

    property3DVeiwExplorerjobExploroerproject exploroerproperty explorer

    job explorerjob project explorerproject3D

    job property explorerMSCerius23D

    1CASTEPfile==>importstructure

    new document3d atomistic document3d

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  • NCHC CASTEP

    2: BuildcrystalBuild Crystal icsdNaCl space group-255 225fm-3m

    attice parametera,b,c NaCla5.64

    option lattice optionorientation standard BuildApply

    3 model+

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  • NCHC CASTEP

    NaabcicsdaddNaCl0.5,0.5,0.5

    3d modelproperty explorefilter3D latticeatomsymmetry system

    symmetry systemcell formula

    Na 4 Cl41:1

    filter3d lattice

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  • NCHC CASTEP

    3D 3ddisplay style3d

    atom display stylestickball & sticklattice

    LABEL 3dLabel

    (element symbol)remove

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  • NCHC CASTEP

    premitive unit cellbuildsymmetrypremitive cellpremitive

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    CASTEP castepcastep

    setuptaskEnergyqualitymedium

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  • NCHC CASTEP

    electronicmoreelectronic optionbasiskpointscfpotentials scffixoccupencyfix occupency

    property setup tasks energy property z z density of state z phonon dispersion phonon density of state pc optical property projected density of state

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  • NCHC CASTEP

    job controlgateway locationmy computer job descriptionautomaticNaClrunmoreretain server fileserver

    run2.23.0 job descriptionjobidservercastepjobactionjobstopunixkillwindows

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    materials studiomaterials studiolicensejobmedium330:18888

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    holonG15EArunningcastep applicationoptics

    job

    explorerstatusrunningsuccessfuljob gateway server _optics.castep

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  • NCHC CASTEP

    castepiconanalysisanalysisresult files

    .castep3d.xsdextended structure dataresult fileNaCl.castepfile availableNaCl.castepresult fileselectron densityimportoutput.castep.castep3d3d

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    .xsd .xsdimportanalysiselectron densityview iso surface on importiso surface

    iso surface3ddisplay style display styleiso surfacevisiblenot visible

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  • NCHC CASTEP

    field field3D5mediumhighvolumevolume3ddisplay option3dfast rander on move3d

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    band structure

    field band structurebandstruct.castepshowshowpartial density of state

    spdcerius2

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  • NCHC CASTEP

    optical property

    CASTEP analysis optical property polylize and polirypolycrystalsmearingscissorsshift reflectivityabsorption reflectivityev cm-1nm more calculateoptical properties.xgdextended graph datasummaryepsilongraph data

    analysiscalculatehelpviewcalculateviewview reflectivity

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    materials studiofileexportmaterials studiochart fileBMP

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    html view\toolbar\html formating html

    html documenthtml

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    bitmapmaterialsstudiojpeggifsave

    property explorerwindow . NaCl_notes jobremovearchive file --> exit noyes

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  • NCHC CASTEP

    unix_client-serve

    --> --> --> telnetServer(msi)

    Materials StudioServerroot mount /mnt/cdrom df -k cdrom

    cd /mnt/cdrom/UNIX ls ./Install

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  • NCHC CASTEP

    CASTEP ServerStructures Server2,13

    License y (yes)

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  • NCHC CASTEP

    License 5 demo license ()

    license manager n (no)

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  • NCHC CASTEP

    Gateway Servery (yes)

    Gateway Server Gateway Server18890 port18888 port

    Gateway Server Server IP :18890 http://192.168.0.1:18890

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  • NCHC CASTEP

    Gateway client Gateway

    Server Management Server Gateways --> Server Gateway

    Server IP port18888

    Run Diagnostics SUCCESS

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  • NCHC CASTEP

    client CASTEP Server

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  • NCHC CASTEP

    ---- (fcc) 1. cell

    2.Lattice vector

    3.cell constent

    unit cell 1/8 1/2 unit cell

    4.atomic position

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  • NCHC CASTEP

    (ICSD) , http://www.nchc.gov.tw () () ICSD, , login or use th demo (), Help : Cs, Ge, Cl , Elements Cs Ge Cl, , Ele.Count3 (2........) "Go",Cerius2model

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  • NCHC CASTEP

    3d CH3OH CO Sketch Atom3DAdiust HydrogenClean 3DAdiust Hydrogen

    Clean

    CH3OH

    Fragment Browser

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  • NCHC CASTEP

    NaClmodel3D

    project explorer NaCl

    Build --> Crystals --> Build Crystal...

    Lattice Parametersa: b: c5.64Apply--> Build

    Add Atoms

    Options Coordinate systemFractional

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  • NCHC CASTEP

    AtomsElementNaa: b: c: 0,Add, a: b: c: 0 0 0 0 0.5 0.5 0.5 0 0.5 0.5 0.5 0

    3D

    Cl a: b: c: 0 0 0.5 0 0.5 0 0.5 0 0 0.5 0.5 0.5

    NaCl

    Properties explorer Filter Symmetry System

    Build --> Symmetry --> Find Symmetry...

    Find Symmetry NaCl FM-3M

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  • NCHC CASTEP

    Si file=>import

    structure

    semiconductors,Si

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  • NCHC CASTEP

    Build --> Surfaces --> Cleave Surface...

    Cleave plane111Depth3.0Cleave

    Build -->Crystals-->Build Vacuum Slab12Build

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  • NCHC CASTEP

    Build-->Symmetry-->SuperCell

    3x3 1

    Si

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  • NCHC CASTEP

    3D 3D Si Import Si

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  • NCHC CASTEP

    cell primitive cell

    CASTEP 3D model Label..........

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  • NCHC CASTEP

    Ctrl Label

    Display Style 3D model Display Style

    AtomBall and stickBall radiusStick radius

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  • NCHC CASTEP

    Ball and stick

    NaClCPKCPK scaleLine width

    SiO2_quartzPolyhedron

    Bond type Lattice Display RangeCerius2 supercell primitive cell Min-0.5Max1.5()Lattice(None) LitticeLittice

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  • NCHC CASTEP

    Isosurface

    CASTEP Analysis

    display style-->isosurface-->display style

    Solid Dot

    Littice rangeprimitive cellVolumetic Selection

    ViewToolbarsVolume Visualization

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  • NCHC CASTEP

    Isosurface3D_model IsosurfaceDeleteVolumetic Selectiontotal electron densityIsosurface

    AnalysisPotentialsView isosurface on importImport View isosurface on import

    Volumetic Selection Poetntial

    Display Style FieldShow Box(Dots)VolumeVolume(Transparency)Littice rangerange Color Maps

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  • NCHC CASTEP

    (Legend---Spectrum)BandBand

    LegendLegend

    Display StyleIsosurfaceisosurfacepotentialisosurface

    IsosurfaceMapped field

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  • NCHC CASTEP

    Sice

    potentialVolumetic SelectionDelete

    IsosurfaceCreat SliceBest FitBest Fit

    Shift Shift +

    Display Style Slice Slice .

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  • NCHC CASTEP

    CASTEP

    h/2m

    H (r) = E (r) [-2 + V] (r) = E (r)

    -12 - 22 + V(r1, r2)(r1, r2) = E (r1, r2)

    V(r1, r2) r1, r2

    Density Functional TheoryDFT E[(r1, r2, r3, ..., rN)],

    HohenbergKohnHohenberg-Kohn

    EG.S.[(r1, r2, r3, ..., rN)]EG.S.[(r)]

    (r)

    EG.S.[(r)]EG.S.[G.S.(r)] EG.S.[(r)] (r)EG.S.[(r)]

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  • NCHC CASTEP

    H-KEG.S.[(r)]EG.S.[(r)]EG.S.[(r)] =TG.S.[(r)] + UG.S.[(r)] (r)UG.S.[(r)]TG.S.[ (r)]T[]kF = (2/3) (1/3)kF2(r) Kohn-Sham I Kohn-Sham

    E[] = Tm[] + Eee[] + Eext[] Tm[] (r1,r2,...) | 1/2 i i2 | (r1,r2,...) Eee[]

    (r1,r2,...) | ij 1/|ri-rj| | (r1,r2,...) Eext[]

    Vext(r)(r) d3r Vext(r)

    Kohn Sham Tm[] Eee[] Ts[] EH[] Tm[] Eee[] Exc[]

    E[] = Ts[] + Exc[] + EH[] + Eext[] Exc[]Ts[]

    Ts[] = 1/2 ii*(r) 2 i(r) d3r (r) = i |i(r)|2

    N = (r) dr = ii*(r) i(r) d3r i(r) (r1, r2, r3, ..., rN)i(r)Kohn-Sham H-KK-S

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  • NCHC CASTEP

    II EH[]

    EH[] = (r') (r) / |r' - r| d3r' d3r =VH(r) (r) d3r VH(r) = (r') / |r' - r| d3r' Hatree energy

    Eext[] = Vext(r) (r) d3r xc[(r)]exchange-correlation energy per particle

    Exc[] xc[(r)] (r) d3r xc[(r)] Kohn-Sham

    xc[ (r) ] xcLDA( (r) )

    (r) xc r0(r)0xcLDAxcLocal Density ApproximationLDA xc[ (r) ] xcLDA((r)) E[(r)] E[]Ts[] EH[]Eext[]Exc[] Exc[]Vext(r)(r) III Kohn-Sham

    (r){i(r), i=1,2,...,N}E[(r)](r)E[(r)] xf(x)f'(x)x

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  • NCHC CASTEP

    E[(r)]i*(r)i(r)a(r) + b(r)ii*(r)i(r)

    Ts[] / i*(r) = 1/2 2 i(r) EH[] / i*(r) = VH(r) i(r) Eext[] / i*(r) = Vext(r) i(r) Exc[] / i*(r) = { Exc[] / } { / i*(r)} Vxc(r) i(r)

    constraintLagrange Multiplier

    N = (r) dr = ii*(r) i(r) d3r Lagrange Multiplier

    N / i*(r) = i(r) = - Ei

    [H - Ei] i = [1/22 + VH + Vext + Vxc - Ei] i = [1/2 2 + (r') / |r' - r| d3r' + Vext + Vxc - Ei] i : = 0

    Eiii i

    [H]i = Ei i [H] i i

    (1) (1) i (2) (2)(n) = (n+1)Self Consistant Feild : SCF[H]Iterative Minimisation

    Kohn-Sham

    Kohn-ShamKohn-ShamHamiltonian E[] / i*(r) Hii

    Ei

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  • NCHC CASTEP

    LagrangeE

    i Steepest Decent {i}

    NNNumerical Recipes Preconditioning HKohn-ShamiHi i H

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  • NCHC CASTEP

    510134 Pseudopotential + Z/rAll-electronvrcrcrcpseudopseudo(ps)Vpseudo (Vps) v=ps for r > rcV=Z/r for r > rc

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  • NCHC CASTEP

    V(r)V(r,,) = V(r)Rl(r)Ylm(,)l(r) = rR(r)El

    Ell(r)rcl(r)l,ps(r)Vl,ps(r)Ell,ps(r)Vl,ps(r)

    Vl,ps(r)l,ps(r)

    Bloch

    H = [T + V] = E R

    V(r+R) = V(r) Bloch

    (r) = u(r) ei kr k

    k(r) = uk(r) ei kr uk(r) uk(r+R) = uk(r) R

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  • NCHC CASTEP

    Super-cell super cell super-cell R

    super-cell super-cellsuper-cellk(r) = uk(r) eikr uk(r) uk(r)

    uk(r) = Gck,GeiGr eiGr

    fi = - dE(R1, R2 , ...) / dRi

    L3L3L+1EHellman-Feynman

    fi = - < | dH(R1, R2, ...) / dRi | >

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  • NCHC CASTEP

    Evaluation of the Gradient Operator Kohn-Sham

    Hamiltonian

    [H] = [T] + [V] Hamiltonian

    [HG] = Tii + [VG] [Hr] = [Tr] + Vr

    FFT G-space r-spaceFFTNN + NNN2

    FFTCarParrinello[PRL55, 2471 (1985)]Kohn 1998 Kohn Zn Kr Project orbital 3D Atomistic

    Document

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  • NCHC CASTEP

    a b c Lattice Options Fractional

    Display styleLabelCASTEP

    TaskEnergy ~ CASTEP Energy~.xsd CASTEPAnalysis

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  • NCHC CASTEP

    Orbitals N.Import

    Volumetic Selection

    Import 3D

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  • NCHC CASTEP

    Kr

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  • NCHC CASTEP

    H2OH2CO Projectstructure

    3D model

    H2O

    Adjuest Hydrogen

    Build Crystal

    H2O Crtl + H2O Crystal

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  • NCHC CASTEP

    Materials Studio

    CrystalH2ORebuild Crystal

    Modify ----> Constrains

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  • NCHC CASTEP

    :CASTEPGeometry OptimizationMore

    Optimize cell CASTEP k-point Gamma

    RUN

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  • NCHC CASTEP

    CO

    3D model

    COElection density

    potential

    Display StyleIsosurfaceMapped field CASTEP SCF local potential

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  • NCHC CASTEP

    Election densityCOpotantialCO

    OrbitalsCO3 ()()

    Volumetric SelectionIsosurface (bonding orbital) (bonding orbital)

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  • NCHC CASTEP

    (anti-bonding orbital)

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  • NCHC CASTEP

    H2 H2 Orbitals

    Isosurface bonding

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  • NCHC CASTEP

    anti-bonding

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  • NCHC CASTEP

    C2H4 3d project explorer

    model C2H4

    Esc

    3dSketch Atom3d

    3d----

    properties explorerFilterBondBondType

    Adjust Hydrogen C2H4 (

    Shift + Alt)

    C2H2C2H6model

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  • NCHC CASTEP

    Build Crystal

    CASTEPpopulation analysispropertyCalculate bond populations

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  • NCHC CASTEP

    .castepbond order

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  • NCHC CASTEP

    Si Import Si Geometry Optimization

    Elastic Constants

    Elastic Constants

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  • NCHC CASTEP

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  • NCHC CASTEP

    SiSi (1 0 0)SiImportSi

    Build -----> Surfaces ------> Cleave Surface

    3D model Si ( 1 0 0 ) Cleave plane Top Depth

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  • NCHC CASTEP

    Build -----> Crystals -----> Build Vacuum -----> Slab

    Vacuum thickness

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  • NCHC CASTEP

    Si SuperCell

    Si SuperCell

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  • NCHC CASTEP

    Si

    Geometry Optimization

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  • NCHC CASTEP

    Si

    Geometry Optimization Si

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  • NCHC CASTEP

    Super-cell CASTEP . () (super cell) super cell super-cell R

    super-cell super-cell

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  • NCHC CASTEP

    k-

    k- Kohn-Shamk-spaceG-space

    (1) (3.11)peakqqR = 2l R Bravais l R

    2

    liq Ratom

    l

    I I e= KKi (3.11) qKeiKR = 1K

    reciprocal lattice(qK)(3.16)K(3.19)

    1

    0 '

    2 ( 2 '/N

    ilaq

    l le N q l

    L)a

    = = =

    (3.16)

    exp[ ] 12

    K RK R l

    ==K KiK Ki (3.18)

    (3.19) (2) (Bragg planes)

    (3.18)KKlattice[] (3) Kprimitive vectorb1b2

    b3latticeprimitive vectora1a2a3aibj= 2ijeiKR=1ideab1a2a3b1a2=0b1a3=0b1a1=2()b1=2(a2a3)/[a1(a2a3)] (3.24 abc)

    K=i=13mibi (3.24d)

    (4) scfcc bcc (3.24) sc scfcc bcc bcc

    fcc?primitive vector

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  • NCHC CASTEP

    (3.24 abc)

    KKWinger-Seitz cell

    Fig 8.2centered-rectangular (8.25) n n-1K

    n BZn-1K n=1 n-1= 0kKk

    kWinger-Sitze CellBZBravaisBravaisWinger-Sitze CellWinger-Sitze Cellcellcellcell WS cell cell k

    Brirouine Zone BZk r

    k-vectorReciprocal lattice vectork h2/(2m) [-2 2ik + k2 + V(r)] uk(r) = kuk(r) kG-vectork2 = k1 + Gk1bandk2kuk(r) eikr

    uk(r) kkNkNN1023kkk point samplingk

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  • NCHC CASTEP

    V(r) k

    Monkhorst-Pack k-point kk-mesh k

    kkk

    SymmetryFind SymmetryCerius2480.1Angs.NLO0.1Ang.48k k k

    kWinger-Sitze CellBZBravaisBravaisWinger-Sitze CellWinger-Sitze CellcellcellcellWS cellcellk-k-n BZBZKn BZ Harrison Constrction and Fermi Surfaces

    (http://phycomp.technion.ac.il/~nika/fermi_surfaces.html)

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  • NCHC CASTEP

    k E(k) = EF k k

    k k + k+ k -kIntrinsic emiconductor

    kkkbandspin-upspin-downup spindownspin up down Ashcroft & Mermin kP Marder Marder

    http://phycomp.technion.ac.il/%7Enika/fermi_surfaces.html

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  • NCHC CASTEP

    Smearing

    CASTEP.rundatDELMAX 0.4DELMIN 0.2 band k-point band k-point sampling fermi surface charge density

    k-point fermi surface

    k1E(k1) < EfCASTEPbandEf

    bandstate k-point samplingfermi surfacecharge density

    k-pointCASTEPband

    3k-pointCASTEPk1k2statee-k3stateE(k3) > Ef band 2/3zone k-point band

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  • NCHC CASTEP

    E(k)EkEk k energy density of states

    Total Density of States TDOS TDOSTDOS

    E(k)TDOSn(E)TDOSE(k)n(E)Van Hove Siguralityn(E)kE(k)TDOSE(k)kE(k)n(E)E(k)k

    TDOS

    PDOS

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  • NCHC CASTEP

    () PDOS

    PDOSLDOSTDOSknw0w1kwTDOSPDOSLDOSw

    w

    = C11+ C22+ ... LCAO = * d3x

    2

    2ii A

    iall i

    Cw

    C

    =

    3

    3x A

    x all sp

    d xw

    d x

    =

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  • NCHC CASTEP

    E k

    Bloch uk(r)eik.ruk(r) Bloch Ch.7kkkkCh.7

    k kkNktravaling waveei(kr-t)Bloch Theorem k (r) = uk(r)eikr

    k(r,t) = uk(r) ei(kr-t)

    k HamiltonianBloch Theorem

    k (r) = uk(r)eikruk(r) k(r) En(k)k(r)uk(r)

    [ (h2/2m)(- i+ k)2 + U(r) ] uk(r) = Ekuk(r) [ (- h2/2m) ( 2 + 2ik - k2 ) + U(r) ] uk(r) = Ekuk(r)

    [ ]uk(r)Hamiltoniann

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  • NCHC CASTEP

    n En,kun,k(r)nEnergy Band Index

    nkEn(k)kEE(k)kPk 0E(k+k) ~ E(k)E(k)HamiltonianHermition Operator

    k En(k) kEBand StructurekkEn(k)

    kE(k)kEn(k) = En(-k)Time-reversal Symmetry + k- kEn(k) =En(-k)

    kE(k) =EF kk

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  • NCHC CASTEP

    + k+k- k Intrinsic Semiconductor

    kkk

    bandspin-upspin-downup spindown spinupdown Ashcroft & Mermin kP Marder Marder

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  • NCHC CASTEP

    Project

    Porject

    NCHC ProjectNCHC

    New Folder

    Project Explorer View --> Explorers

    File ==> Import

    structure GaAs semiconductors

    build symmetry premitive cell premitive

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  • NCHC CASTEP

    premitive cell Calculation

    setupTaskEnergyQuality Medium

    Density of States Calculate PDOSRun

    properties

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  • NCHC CASTEP

    jobAnalysis

    AnalysisBand structureDOSshow DOSPartialview

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  • NCHC CASTEP

    Al File ==> ImportstructureAlmetals/pure-metals ( Sisemiconductors) ( SiO2metal-oxides) buildsymmetry premitive cell premitive

    premitive cell Calculation

    setupTaskEnergyQuality Medium

    Density of States Calculate PDOSRun

    properties

    Fix occupency

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  • NCHC CASTEP

    Electronicmoreelectronic option SCFFix occupency

    SiO2 Fix jobAnalysis

    Analysis Band structureDOSshow DOS view

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  • NCHC CASTEP

    z File ==> Importstructuremetals/pure-metalsNi z buildsymmetrypremitive cellpremitive z premitive cell Calculation

    Nisetupspin polarizedInitial spin 1

    Properties Run

    jobNi.castepIntegrated Spin Density = 0.62287B ( 0.6B )

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  • NCHC CASTEP

    z File ==> Importstructuresemiconductors Si z buildsymmetrypremitive cellpremitive z premitive cellCalculation z SetupPropertiesOptical properties z Run

    jobAnalysisOptical propertiesFunction AbsorptionDielectric Function Dielectric FunctionCalculationPolycrystallineSmearing 0.2 eV Scissors0.5 eVCaculate SmearingScissors View View

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  • NCHC CASTEP

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  • NCHC CASTEP

    Si z file => importstructure Model z buildsymmetrypremitive cell premitive

    premitive cellproperty explorersymmetry system z Calculation castep z Task EnergyQualityCoarse z ElectronicPseudopotentialNorm-conserving (

    Ultra soft potential ) MoreElectronic Options

    PropertiesPhonon dispersionMoreq-vector path

    Electronic Optionsfix occupency(fix ccupency)

    (q) q Job controlGatway location Run

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  • NCHC CASTEP

    Job Job Completed Si_PhoDisp.castep

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  • NCHC CASTEP

    ( Si_PhoDisp.castep )Analyis

    Phonon dispersion( Si_PhoDisp.castep Results file) View

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  • NCHC CASTEP

    q q q

    q q

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  • NCHC CASTEP

    CASTEP

    () CASTEP()""3

    CASTEP (Virtural Crystal ApproximationVCA) 0.3A0.7B Vps (poseudopotential) Vps

    MSUSPNCPUSPNCP (norm-conserving potential)NPC (poseudopotential .recpot)NCP

    1.CASTEPUSPNCP 2. 3. (*.pspnorm-conservingTM potential

    ) Vps information

    CASTEP/Materials StudioVpsE-cut()coasemediumfineCASTEP()VpsVps (C:\Program Files\Accelrys\MS Modeling 98 / 111

  • NCHC CASTEP

    3.0\Data\Resources\Quantum\Castep\Potentials) coarseE-cut1.0 eV

    medium0.3 eVfine0.1eVprecisefineE-cut10%

    Vps Vps(1) (O_00.recpot

    O_01.recpot) (2)(13Ga_00.recpotGaNGaAs3Ga_01)

    user norm-conserving potentialInNIn_00.recpotVps In_01.recpot InN

    (accuracy test)

    ().

    """"

    Materials StudioCASTEP

    ( quality)k- ()

    99 / 111

  • NCHC CASTEP

    (BS_MAX_ITER)

    CASTEP

    CASTEP1990 1992Accelrys CASTEP

    http://www.accelrys.com/references/castep/ CASTEP

    CASTEP

    CASTEP(mediumfine)k-point( Monkhorst-Park n1 x n2 x n3 )pseudopotential

    Task

    Task ()CASTEPTask" (properties)" Qualty

    Qualty (CPU time) coarse""Mediumfine k-point

    K K

    100 / 111

  • NCHC CASTEP

    K-point K.P(Marder) K.K

    LDA GGA LDA

    LDA abcabg Sum Rule

    GGA LDA

    GGA Generalised Gradient ApproximationLDA GGA

    GGA LDA PW91 CASTEP

    A good and detailed reference for Exc from S. J. Clark's Group in Darhum

    http://cmt.dur.ac.uk/sjc/thesis_ppr/Thesis.html W. Koch and M. C. Holtausen A Chemist's Guide to Density Functional Theory Wiley-VCH Parr and Yang Density Fuctional Thoery of Atoms and Moleculs Oxford University Press

    101 / 111

  • NCHC CASTEP

    initial spin spin-polarise spin

    ()(d**64)spin.initial spin()K-pointMoakhorst-Parkq1q2q3q1q2q3(kkGG/ 2 |G|

    q1q2q3Electronic Optionsk-point separation() () Vacuum ()

    k-pointGammaGammak-point(0,0,0)7812

    102 / 111

  • NCHC CASTEP

    1. H2 0.74 2. H2

    Properties Distance Distance 0.8

    6. Ensemble4H2() NVE ()

    3. H2 0.8

    7. Number of steps20() 8. Job ControlRun

    4. CASTEP Tools->Calculation 5. SetupTaskDynamicsQualityCoarse FunctionalLDA "More..." Dynamics

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  • NCHC CASTEP

    8. Animation View->Toolbars->Animation

    9.

    10. Job Project Job_Name Trajectory.xtd

    12. Animation Play

    13. Animation Animation ModeOptions

    11.

    14. Playback speedSlow

    104 / 111

  • NCHC CASTEP

    1. H2Pd( HelpTransition state searching using LST/QST tools) reactants

    2. (HelpTransition state searching using LST/QST tools)products

    3. Tools->Reaction Preview"Reaction Preview"

    5. "Find Equivalent Atoms"

    4. "Reactant"reactants"Product"products "Match... "

    105 / 111

  • NCHC CASTEP

    "AutoFind" ()2xHreactants7:Hproducts7:H7 "Set Match"

    6. 7.Auto Find

    8. Find Equivalent AtomsAuto Find () "Set Match" "Reset"

    106 / 111

  • NCHC CASTEP

    9. Reaction Preview"Number of frames"Trajectory "Base preview on reactant""Base preview on product"Trajectory "Preview" "-" "Project" "-" "Number of frames" 10 "Preview"10. reachtants-products 11.

    Build->bonds ()12. "Bond Calculation" Monitor bonding

    13. CASTEP Tools->Calculation 14. Task "TS Searching"Quality Medium "More..."

    15. "Search protocol" "Complete LST/QST""Quality" "Medium" ( Help Transition state searching using LST/QST tools )

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  • NCHC CASTEP

    16. Electronic "k-poiny set" Gamma

    17. Job Control Run

    18. TS.castepEnergy of reaction -0.97eVBarrier from reactant 0.07 eVBarrier from product 1.04 eV

    108 / 111

  • NCHC CASTEP

    1. Project

    2. Si

    3.SiPrimitive CellBuild->Symmetry->Primitive Cell 4.Si 5. CASTEP Tools->Calculation 6. Quality Coarse Functional LDA 7. Screened-Exchange Electronic Pseudopotentials "Norm-conserving" "More..." 8. Si "Fix occupancy (insulator only)" Screened-Exchange 9. Properties Band structure "More..." 10. Screened-Exchange"Use separate XC functional for band structure calculation" Functional"sX-LDA"OK

    109 / 111

  • NCHC CASTEP

    11. Job Control BandStr.param"Files..."

    12.Save Files

    13. ProjectJob_Name_BandStr.param

    14. Screened-ExchangeIteration3(180) Job_Name_BandStr.paramBS_MAX_ITER : 180

    15. ProjectJob_Name.param

    16. CASTEP Job FilesRun Files

    17.

    110 / 111

  • NCHC CASTEP

    => FFT => super cell k G r R "" Deybe k "CASTEP""" identical k-point MD H2 NVENPTNPH Vps O2H2LDA/GGA cohensive energy Si ICSD CSD Si PDOS NMR sX-LDA http://boson2.phys.tku.edu.tw/web_NCHC/to_do_list.htm (3 of 3)2005-4-19 13:05:38

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    Materials Studio CASTEP Explorer 3DLABEL CASTEP .xsd field band structureoptical propertyCASTEP analysisoptical propertyhtml unix_client-serve Gateway Server Gateway

    1.2.Lattice vector3.cell constent4.atomic position (ICSD)

    3D Lattice IsosurfaceSice

    CASTEP Density Functional TheoryDFTKohn-Sham I Kohn-Sham IIIII Kohn-Sham Preconditioning

    Pseudopotential

    Bloch Super-cell Evaluation of the Gradient Operator

    H2OH2CO CO H2 C2H4 Si

    Super-cell

    k

    Smearing

    w Ek

    Si

    CASTEP Vps (poseudopotential) VpsVps informationVps

    (accuracy test)CASTEPTaskQualtyk-point

    LDA GGALDA

    GGA initial spinVacuum ()